f22debacb4
gnu: Add poppler-qt5.
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* gnu/packages/pdf.scm (poppler-qt5): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-05-23 14:35:23 +03:00
524eee0298
gnu: Add slurm-drmaa.
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* gnu/packages/parallel.scm (slurm-drmaa): New variable.
2016-05-23 12:55:40 +02:00
0783787436
gnu: Add ParDRe.
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* gnu/packages/bioinformatics.scm (pardre): New variable.
2016-05-23 12:55:09 +02:00
624d4e2e6b
gnu: gnu-pw-mgr: Update to 2.0.
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* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.0.
2016-05-22 16:58:21 +03:00
13913c52d5
gnu: imagemagick: Update to 6.9.4-4.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-4.
2016-05-22 03:51:57 -04:00
88bb4197c4
gnu: Add python2-rope.
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* gnu/packages/python.scm (python2-rope): New variable.
2016-05-22 14:19:52 +10:00
3c47489766
gnu: Add gnome-calendar.
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* gnu/packages/gnome.scm (gnome-calendar): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-05-21 23:30:37 +02:00
548994142f
gnu: Add envstore.
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* gnu/package/shellutils.scm: New file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-05-21 23:30:37 +02:00
b9b447be64
gnu: Add sicp.
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* gnu/packages/scheme.scm (sicp): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-05-21 23:30:37 +02:00
a56be436d0
gnu: Add dia.
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* gnu/packages/gnome.scm (dia): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-05-21 23:30:37 +02:00
28dee3d282
build: Fix 'AM_V_at' typo.
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* Makefile.am (hydra-jobs.scm): Fix 'AM_V_at' typo.
2016-05-21 23:09:46 +02:00
12b6f6527e
gnu: openssl: Remove workaround for GCC 4.9.3 (no longer used).
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* gnu/packages/tls.scm (openssl)[arguments]: In the 'configure' phase,
remove the workaround that passed "-mfpu=vfpv3" on armhf systems.
2016-05-21 12:52:51 -04:00
ece6864bd0
grafts: Rename files whose name matches a graft.
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Fixes <http://bugs.gnu.org/23132 >.
Reported by Mark H Weaver <mhw@netris.org>.
* guix/build/graft.scm (rename-matching-files): New procedure.
(rewrite-directory): Use it.
* tests/grafts.scm ("graft-derivation, renaming"): New test.
2016-05-21 01:35:14 +02:00
cf8b312d18
grafts: Preserve empty directories when grafting.
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* guix/build/graft.scm (rewrite-directory)[rewrite-leaf]: Add case for
'directory.
Pass #:directories? #t to 'find-files'.
2016-05-21 01:35:14 +02:00
30d4bc0434
substitute: Gracefully handle invalid store file names.
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Before, something like:
echo have /gnu/foo | ./test-env guix substitute --query
would lead to an ugly backtrace.
* guix/scripts/substitute.scm (narinfo-cache-file): Call 'leave' when
'store-hash-part' returns #f.
2016-05-21 01:35:14 +02:00
a773c3142d
graph: Allow store file names for 'derivation' and 'references' graphs.
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* guix/scripts/graph.scm (%derivation-node-type)[convert]: Add
'derivation-path?' and catch-all clauses.
(%reference-node-type)[convert]: Add 'store-path?' and catch-all
clauses.
(assert-package, nodes-from-package): New procedures.
(%package-node-type, %bag-node-type,%bag-with-origins-node-type)
(%bag-emerged-node-type): Add 'convert' field
(guix-graph): Rename 'packages' to 'items' and
allow 'store-path?' arguments.
* guix/graph.scm (<node-type>)[convert]: Adjust comment.
* doc/guix.texi (Invoking guix graph): Document it.
2016-05-21 01:35:14 +02:00
97507ebedc
derivations: 'derivation' sorts items in the resulting object.
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* guix/derivations.scm (derivation-input<?): New procedure.
(write-derivation)[coalesce-duplicate-inputs]: Remove.
Remove calls to 'sort'.
(coalesce-duplicate-inputs): New procedure.
(derivation-hash): Sort INPUTS and use 'coalesce-duplicate-inputs'.
(derivation)[input->derivation-input]
[coalesce-duplicate-inputs]: New procedures.
Sort OUTPUTS, INPUTS, and ENV-VARS.
* tests/derivations.scm ("read-derivation vs. derivation"): New test.
2016-05-21 01:35:14 +02:00
3cabdead6f
graph: Use absolute file name canonicalization.
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* guix/scripts/graph.scm (guix-graph): Wrap in 'with-fluids'.
2016-05-21 01:35:14 +02:00
3c9a7185e4
gnu: linux-libre: Update to 4.5.5.
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* gnu/packages/linux.scm (linux-libre): Update to 4.5.5.
2016-05-20 18:58:15 -04:00
4483a1185d
gnu: linux-libre-4.4: Update to 4.4.11.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11.
2016-05-20 18:58:06 -04:00
932f2b70a6
ant-build-system: Add unpack phase.
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* guix/build/ant-build-system.scm (unpack): New procedure.
(%standard-phases): Use it.
2016-05-20 15:24:32 +02:00
987a118334
gnu: Add default gcc-objc++.
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* gnu/packages/gcc.scm (gcc-objc++): New variable.
2016-05-20 15:19:48 +02:00
a5948c0d41
gnu: Add gcc-objc++-4.9.
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* gnu/packages/gcc.scm (gcc-objc++-4.9): New variable.
2016-05-20 15:19:48 +02:00
8b196ad208
gnu: Add default gcc-objc.
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* gnu/packages/gcc.scm (gcc-objc): New variable.
2016-05-20 15:19:48 +02:00
2d69c1616d
gnu: Add gcc-objc-4.9.
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* gnu/packages/gcc.scm (gcc-objc-4.9): New variable.
2016-05-20 15:19:33 +02:00
813efdded1
gnu: r-rcpparmadillo: Update to 0.6.700.6.0.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.
2016-05-20 15:18:23 +02:00
945eef85c5
gnu: armadillo: Update to 6.700.7.
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* gnu/packages/maths.scm (armadillo): Update to 6.700.7.
2016-05-20 15:18:23 +02:00
7740f58128
gnu: r-genomation: Update to 1.4.2.
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* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
2016-05-20 15:18:23 +02:00
f6225d135c
gnu: r-jsonlite: Update to 0.9.20.
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* gnu/packages/web.scm (r-jsonlite): Update to 0.9.20.
2016-05-20 15:18:23 +02:00
c969453e1c
gnu: r-plotly: Update to 3.6.0.
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* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.
2016-05-20 15:18:23 +02:00
95513f284f
gnu: r-matrixstats: Update to 0.50.2.
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* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.
2016-05-20 15:18:23 +02:00
b8f6a97ebd
gnu: r-r-rsp: Update to 0.30.0.
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* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.
2016-05-20 15:18:23 +02:00
f0c56a2411
gnu: r-rmarkdown: Update to 0.9.6.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.
2016-05-20 15:18:23 +02:00
2f7ac060ff
gnu: r-plotrix: Update to 3.6-2.
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* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.
2016-05-20 15:18:23 +02:00
133f27b06a
gnu: r-devtools: Update to 1.11.1.
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* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.
2016-05-20 15:18:23 +02:00
3624ad7150
gnu: r-git2r: Update to 0.15.0.
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* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0.
2016-05-20 15:18:23 +02:00
c1e2c9d41a
gnu: r-openssl: Update to 0.9.3.
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* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3.
2016-05-20 15:18:23 +02:00
383f6337a0
gnu: r-testthat: Update to 1.0.2.
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* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2.
2016-05-20 15:18:23 +02:00
1b206aeb00
gnu: r-knitr: Update to 1.13.
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* gnu/packages/statistics.scm (r-knitr): Update to 1.13.
2016-05-20 15:18:23 +02:00
d5130e6345
gnu: r-highr: Update to 0.6.
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* gnu/packages/statistics.scm (r-highr): Update to 0.6.
2016-05-20 15:18:23 +02:00
df25b0048a
gnu: r-formatr: Update to 1.4.
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* gnu/packages/statistics.scm (r-formatr): Update to 1.4.
2016-05-20 15:18:23 +02:00
84e5368719
gnu: r-evaluate: Update to 0.9.
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* gnu/packages/statistics.scm (r-evaluate): Update to 0.9.
2016-05-20 15:18:23 +02:00
9a0ccf43cc
gnu: r-bh: Update to 1.60.0-2.
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* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2.
2016-05-20 15:18:23 +02:00
a76b3f6914
gnu: r-dbi: Update to 0.4-1.
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* gnu/packages/statistics.scm (r-dbi): Update to 0.4-1.
2016-05-20 15:18:23 +02:00
eb1a5b65c0
gnu: r-rcpp: Update to 0.12.5.
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* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5.
2016-05-20 15:18:23 +02:00
8ede249e0a
gnu: r-genomicfeatures: Update to 1.24.2.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2.
2016-05-20 15:18:23 +02:00
192e1ea8d1
gnu: r-summarizedexperiment: Update to 1.2.2.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2.
2016-05-20 15:18:23 +02:00
d7420566a9
gnu: r-biocparallel: Update to 1.6.2.
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* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2.
2016-05-20 15:18:23 +02:00
73af676feb
gnu: r-annotationdbi: Update to 1.34.2.
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* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2.
2016-05-20 15:18:23 +02:00
679e670b36
gnu: r-variantannotation: Update to 1.18.1.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.1.
2016-05-20 15:18:23 +02:00
Roel Janssen