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651 Commits (762b5a89c2d5c0c6acd471bdc90ed6435c35eb29)

Author SHA1 Message Date
Raoul Jean Pierre Bonnal 362ea0dc29
gnu: Add r-rcppprogress. 
* gnu/packages/statistics.scm (r-rcppprogress): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal aa890f6185
gnu: Add r-caret. 
* gnu/packages/statistics.scm (r-caret): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal ab2ec643c3
gnu: Add r-car. 
* gnu/packages/statistics.scm (r-car): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal a3eb8c8191
gnu: Add r-pbkrtest. 
* gnu/packages/statistics.scm (r-pbkrtest): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 51fc7d8c31
gnu: Add r-lme4. 
* gnu/packages/statistics.scm (r-lme4): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal c549864d90
gnu: Add r-nloptr. 
* gnu/packages/statistics.scm (r-nloptr): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 49dc1fa5cb
gnu: Add r-quantreg. 
* gnu/packages/statistics.scm (r-quantreg): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 545d0789fc
gnu: Add r-matrixmodels. 
* gnu/packages/statistics.scm (r-matrixmodels): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal aa84100011
gnu: Add r-modelmetrics. 
* gnu/packages/statistics.scm (r-modelmetrics): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 21cfad44c1
gnu: Add r-rcppeigen. 
* gnu/packages/statistics.scm (r-rcppeigen): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 0392f82fd5
gnu: Add r-minqa. 
* gnu/packages/statistics.scm (r-minqa): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:05 +10:00
Raoul Jean Pierre Bonnal e08ad76658
gnu: Add r-fnn. 
* gnu/packages/statistics.scm (r-fnn): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:55:28 +10:00
Raoul Jean Pierre Bonnal 7711f61450
gnu: Add r-pbapply. 
* gnu/packages/statistics.scm (r-pbapply): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:51:50 +10:00
Raoul Jean Pierre Bonnal d4cebae286
gnu: Add r-vgam. 
* gnu/packages/statistics.scm (r-vgam): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:47:02 +10:00
Raoul Jean Pierre Bonnal a409e8b52f
gnu: Add r-fpc. 
* gnu/packages/statistics.scm (r-fpc): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal 5da4f84f1f
gnu: Add r-trimcluster. 
* gnu/packages/statistics.scm (r-trimcluster): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal c0cab38e03
gnu: Add r-robustbase. 
* gnu/packages/statistics.scm (r-robustbase): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal cda0720805
gnu: Add r-deoptimr. 
* gnu/packages/statistics.scm (r-deoptimr): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal c962816dc4
gnu: Add r-prabclus. 
* gnu/packages/statistics.scm (r-prabclus): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal 5638e15475
gnu: Add r-mclust. 
* gnu/packages/statistics.scm (r-mclust): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal a1f2668e6c
gnu: Add r-flexmix. 
* gnu/packages/statistics.scm (r-flexmix): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal 1721fb4fe7
gnu: Add r-modeltools. 
* gnu/packages/statistics.scm (r-modeltools): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal d5eca4f9ac
gnu: Add r-diptest. 
* gnu/packages/statistics.scm (r-diptest): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Ricardo Wurmus f2ac937924
gnu: r: Remove obsolete configure flags. 
* gnu/packages/statistics.scm (r)[arguments]: Remove obsolete configure flags.
 2017-03-09 07:38:24 +01:00
Ricardo Wurmus f7db12022c
gnu: r: Update to 3.3.3. 
* gnu/packages/statistics.scm (r): Update to 3.3.3.
 2017-03-09 07:38:24 +01:00
Ricardo Wurmus beaa026aa7
gnu: r: Fix more reproducibility problems. 
* gnu/packages/statistics.scm (r)[arguments]: Patch locations in the
build system that need special treatment for reproducibility.
 2017-03-08 12:32:49 +01:00
Ricardo Wurmus 745c687be3
gnu: r: Fix syntax for INSTALL_OPTS. 
This is a follow-up to commit 4621acfd82.

* gnu/packages/statistics.scm (r)[arguments]: Ensure that
"--built-timestamp" appears on the same line as the other INSTALL_OPTS.
 2017-03-08 12:32:49 +01:00
Marius Bakke 6cb7477699
gnu: python-statsmodels: Update to 0.8.0. 
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
Update to 0.8.0.
[source]: Use 'pypi-uri'.
[arguments]: Add more files to matplotlib backend substitution.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that
fails with numpy 1.12. Remove previous contents.
 2017-03-06 23:24:11 +01:00
Tobias Geerinckx-Rice 9c53993fb2
gnu: r-gtable: Remove duplicate definition. 
* gnu/packages/statistics.scm (r-gtable): Remove shadowed 0.1.2 version.
[home-page]: Use HTTPS.
[synopsis, description]: Use those of the removed version.
 2017-03-03 00:59:30 +01:00
Tobias Geerinckx-Rice fe08b1a759
gnu: r-codetools: Remove duplicate definition. 
* gnu/packages/statistics.scm (r-codetools): Remove shadowed 0.2-14 version.
[home-page]: Use HTTPS.
 2017-03-03 00:59:30 +01:00
Ricardo Wurmus 4621acfd82
gnu: r: Build default packages reproducibly. 
This is a follow-up to commit de643f0c15.

* gnu/packages/statistics.scm (r)[arguments]: Set the built timestamp for core
packages to the epoch; add phase "build-recommended-packages-reproducibly".
 2017-02-07 20:04:49 +01:00
Raoul Jean Pierre Bonnal c6dced88f2
gnu: Add r-rann. 
* gnu/packages/statistics.scm (r-rann): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-03 14:21:22 -05:00
Raoul Jean Pierre Bonnal 37337699d7
gnu: Add r-randomforest. 
* gnu/packages/statistics.scm (r-randomforest): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-03 14:12:51 -05:00
Ben Woodcroft e4b6c565be
gnu: r-ggplot2: Add r-svglite to propagated-inputs. 
* gnu/packages/statistics.scm (r-ggplot2)[propagated-inputs]: Add
r-svglite.
 2017-01-23 21:23:33 +10:00
Raoul Jean Pierre Bonnal e431eb670d
gnu: Add r-fastica. 
* gnu/packages/statistics.scm (r-fastica): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal 793f2edbbc
gnu: Add r-lars. 
* gnu/packages/statistics.scm (r-lars): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal efba686c80
gnu: Add r-mixtools. 
* gnu/packages/statistics.scm (r-mixtools): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal c6017f7222
gnu: Add r-cowplot. 
* gnu/packages/statistics.scm (r-cowplot): New variable.
 2017-01-20 15:38:02 +01:00
Ricardo Wurmus 26a281ef27
gnu: Add r-compquadform. 
* gnu/packages/statistics.scm (r-compquadform): New variable.
 2017-01-17 21:46:48 +01:00
Ricardo Wurmus 5f764dd7ff
gnu: Add r-fivethirtyeight. 
* gnu/packages/statistics.scm (r-fivethirtyeight): New variable.
 2017-01-17 21:46:47 +01:00
Roel Janssen ac1f1e4e02
gnu: Add r-ggthemes. 
* gnu/packages/statistics.scm (r-ggthemes):  New variable.
 2017-01-12 15:14:04 +01:00
Roel Janssen 7b030c9f9b
gnu: r-plotrix: Update to 3.6-4. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-4.
 2017-01-03 13:51:05 +01:00
Roel Janssen 0c74399d98
gnu: r-git2r: Update to 0.18.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.18.0.
 2017-01-03 13:49:18 +01:00
Roel Janssen 807db78fc9
gnu: r-hmisc: Update to 4.0-2. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-2.
  [propagated-inputs]: Add r-base64enc.
 2017-01-03 13:46:14 +01:00
Roel Janssen 437d064dc5
gnu: r-openssl: Update to 0.9.6. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.6.
 2017-01-03 13:39:51 +01:00
Roel Janssen da13738ef0
gnu: r-ggplot2: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.1.
 2017-01-03 13:34:53 +01:00
Ricardo Wurmus 35bb2ff88a
gnu: r-rsqlite: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus 28c041afe8
gnu: Add r-plogr. 
* gnu/packages/statistics.scm (r-plogr): New variable.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus ab607061cd
gnu: r-hmisc: Update to 4.0-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus 0811f0f9d2
gnu: Add r-base64. 
* gnu/packages/statistics.scm (r-base64): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus ca380feb37
gnu: r-rmarkdown: Update to 1.3. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus 046e27e3f5
gnu: Add r-rprojroot. 
* gnu/packages/statistics.scm (r-rprojroot): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus c729d3dc0e
gnu: r-zoo: Update to 1.7-14. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 53941eb7a5
gnu: r-fastcluster: Update to 1.1.22. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3a181dc46e
gnu: r-plotly: Update to 4.5.6. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 54aa6eb6ee
gnu: r-r-rsp: Update to 0.40.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 1a44753b95
gnu: r-r-utils: Update to 2.5.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 62350c0797
gnu: r-coda: Update to 0.19-1. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-1.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3607afbe4c
gnu: r-chron: Update to 2.3-48. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-48.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus eaec5506ad
gnu: r-knitr: Update to 1.15.1. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1.
[propagated-inputs]: Remove r-formatr.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus fd7810d323
gnu: r-bh: Update to 1.62.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus dd4ae2950a
gnu: r-svglite: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 48a87bbe3b
gnu: r-gdtools: Update to 0.1.3. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus ab01f1cdb1
gnu: r-ggplot2: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0.
[propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and
r-tibble.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus b94b03b7fa
gnu: r-scales: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-scales): Update to 0.4.1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 8a8fc31c6a
gnu: r-mgcv: Update to 1.8-16. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 2a1c1b8074
gnu: r-hms: Update to 0.3. 
* gnu/packages/statistics.scm (r-hms): Update to 0.3.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 85455a08f4
gnu: r-git2r: Update to 0.17.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus abb6f0540e
gnu: r-ade4: Update to 1.7-5 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus db1b38af4e
gnu: r-xml: Update to 3.98-1.5. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5.
[propagated-inputs]: Remove r-rcurl.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 773a50114c
gnu: r-sparsem: Update to 1.74. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.74.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 76ce7c3767
gnu: r-data-table: Update to 1.10.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0.
[propagated-inputs]: Remove r-chron.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 58b93ad5d9
gnu: r-estimability: Update to 1.2. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.2.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus eebac90aa8
gnu: r-rcpp: Update to 0.12.8. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus 9cdf10f1c9
gnu: r-yaml: Update to 2.1.14. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus 94a6f20baf
gnu: r-colorspace: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2.
 2016-12-29 20:10:07 +01:00
Raoul Jean Pierre Bonnal 2fd261a37a
gnu: Add r-statmod. 
* gnu/packages/statistics.scm (r-statmod): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 294304169a
gnu: Add r-ggbeeswarm. 
* gnu/packages/statistics.scm (r-ggbeeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 649d0c4841
gnu: Add r-sourcetools. 
* gnu/packages/statistics.scm (r-sourcetools): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 6ba279853c
gnu: Add r-beeswarm. 
* gnu/packages/statistics.scm (r-beeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 069581351b
gnu: Add r-vipor. 
* gnu/packages/statistics.scm (r-vipor): New variable.
 2016-12-29 19:54:58 +01:00
Raoul Bonnal a1814e4a27
gnu: r: Update to 3.3.2. 
* gnu/packages/statistics.scm (r): Update to 3.3.2.
 2016-12-18 10:02:52 +10:00
Ben Woodcroft ce3f92e701
gnu: Add r-bit64. 
* gnu/packages/statistics.scm (r-bit64): New variable.
 2016-12-14 20:43:28 +10:00
Ben Woodcroft 42066e6b4a
gnu: Add r-bit. 
* gnu/packages/statistics.scm (r-bit): New variable.
 2016-12-14 20:43:28 +10:00
Hartmut Goebel 3bf4280659
Merge branch 'master' into python-build-system 2016-11-29 18:47:16 +01:00
Ricardo Wurmus 419a8a186f
gnu: Add r-rocr. 
* gnu/packages/statistics.scm (r-rocr): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 0cfe0570f2
gnu: Add r-gplots. 
* gnu/packages/statistics.scm (r-gplots): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 6034cd905e
gnu: Add r-gdata. 
* gnu/packages/statistics.scm (r-gdata): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 1571f90e35
gnu: Add r-gtools. 
* gnu/packages/statistics.scm (r-gtools): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus 6335bf1c80
gnu: Add r-sfsmisc. 
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1bd46f5520
gnu: Add r-fastcluster. 
* gnu/packages/statistics.scm (r-fastcluster): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus c4708783ee
gnu: Add r-preprocesscore. 
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus c9a6671490
gnu: Add r-dynamictreecut. 
* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus e7d16ad161
gnu: Add r-spams. 
* gnu/packages/statistics.scm (r-spams): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus 9f5435d963
gnu: Add r-googlesheets. 
* gnu/packages/statistics.scm (r-googlesheets): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus d427e03eee
gnu: Add r-cellranger. 
* gnu/packages/statistics.scm (r-cellranger): New variable.
 2016-11-28 22:43:15 +01:00
Ricardo Wurmus 58612fd2c8
gnu: Add r-rematch. 
* gnu/packages/statistics.scm (r-rematch): New variable.
 2016-11-28 22:43:15 +01:00
Hartmut Goebel 25b2c47d75
gnu: python-statsmodels: Fix build 
* gnu/packages/statistics.scm (python-statsmodels): [check] set
  PYTHONPATH prior to running tests.
 2016-11-15 22:31:33 +01:00
Hartmut Goebel b41a05ce49
gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs). 
Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".

* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
  configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
  python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
  configure-flags. (python-pillow) remove phase
  "disable-egg-generation". (python-libarchive-c) Remove patching
  setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
  "prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
  "disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
 2016-11-15 22:31:02 +01:00
Hartmut Goebel 5c31f4aa7c
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a) 
This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).

* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
  python-twobitreader, python2-twobitreader,
  python-plastid, python2-plastid,
  python2-pybigwig,
  python2-screed,
  sra-tools): No longer "inherit" Python 2 packages
  inheriting from a Python 3 package if the sole reason for inheriting was
  adding python-setuptools respective python2-setuptools to [inputs],
  [native-inputs] or [propagated-inputs]. Remove now needless [properties]
  "python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
  python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
  Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
  python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
 2016-11-15 22:28:59 +01:00
Hartmut Goebel 00e10c6e67
gnu: Remove python-setuptools and python2-setuptools from inputs (part 3) 
This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.

* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
  python-setuptools respective python2-setuptools from [inputs],
  [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
  a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
  python2-oauthlib,
  python2-seaborn,
  python2-tornado,
  python2-terminado,
  python2-rauth,
  python2-anyjson,
  python2-amqp,
  python2-kombu,
  python2-billiard,
  python2-celery,
  python2-jellyfish,
  python2-binaryornot,
  python2-natsort,
  python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
 2016-11-15 22:28:38 +01:00
Ludovic Courtès 2cab1dd58b
Merge branch 'core-updates' 2016-11-13 00:34:16 +01:00
Ricardo Wurmus b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode". 
This phase is no longer needed as upstream has merged the fix in the
current release.

* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
 2016-11-10 18:49:49 +01:00
Mark H Weaver 71e21fb26d
Merge branch 'master' into core-updates 2016-11-07 00:33:16 -05:00
ng0 73ea83f517
gnu: r-proto: Update project's home-page. 
* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-11-06 14:35:21 +02:00
Mark H Weaver 8b6ad165d1
Merge branch 'master' into core-updates 2016-11-06 03:29:06 -05:00
Roel Janssen 8af47ef603
gnu: r-nmf: Use bigmemory. 
* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.
 2016-11-04 14:53:24 +01:00
Roel Janssen 59523c4cf5
gnu: Add r-bigmemory. 
* gnu/packages/statistics.scm (r-bigmemory): New variable.
 2016-11-04 14:46:47 +01:00
Roel Janssen 4a83865286
gnu: Add r-synchronicity. 
* gnu/packages/statistics.scm (r-synchronicity): New variable.
 2016-11-04 14:40:13 +01:00
Roel Janssen c6105d69c0
gnu: Add r-bigmemory-sri. 
gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
 2016-11-04 14:35:04 +01:00
Ricardo Wurmus e71659162b
gnu: r-hmisc: Update to 4.0.0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus f158b92caf
gnu: r-r-oo: Update to 1.21.0. 
* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus f890981690
gnu: r-openssl: Update to 0.9.5. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus fbe5161c7d
gnu: r-checkmate: Update to 1.8.2. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus 572e1a0ca7
gnu: r-acepack: Update to 1.4.1. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus 054a9a786b
gnu: r-gdtools: Update to 0.1.1. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus d13a4e2575
gnu: r-proto: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus ebbd4d0bfd
gnu: Add r-survival. 
* gnu/packages/statistics.scm (r-survival): New variable.
 2016-11-03 19:01:44 +01:00
Mark H Weaver 3d82676919
Merge branch 'master' into core-updates 2016-10-27 20:21:26 -04:00
Roel Janssen b5ce25cc0e
gnu: r: Use uname from Guix 
* gnu/packages/statistics.scm (r): Use uname from Guix.
 2016-10-27 16:37:24 +02:00
Leo Famulari 02c73adcdf
Merge branch 'master' into core-updates 2016-10-26 19:00:06 -04:00
Ricardo Wurmus aba6463975
gnu: r: Update to 3.3.1. 
* gnu/packages/statistics.scm (r): Update to 3.3.1.
 2016-10-26 18:14:17 +02:00
Ricardo Wurmus a8e893b0b8
gnu: r-matrixstats: Update to 0.51.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
 2016-10-26 16:23:32 +02:00
Ricardo Wurmus fd54f65e72
gnu: r-r-utils: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
 2016-10-26 16:23:32 +02:00
Ricardo Wurmus 89242ea47f
gnu: r-irlba: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus 4f2ebc16ce
gnu: r-codetools: Update to 0.2-15. 
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus cf738e961e
gnu: r-snow: Update to 0.4-2. 
* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus 41bc22a7de
gnu: r-backports: Update to 1.0.4. 
* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
 2016-10-26 16:23:30 +02:00
Ricardo Wurmus 72263db73d
gnu: r-foreign: Update to 0.8-67. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
 2016-10-26 16:23:30 +02:00
Ricardo Wurmus 130410d941
gnu: r-cluster: Update to 2.0.5. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus e7622804aa
gnu: r-acepack: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus bff4dc6324
gnu: r-r6: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus e0a9093139
gnu: r-evaluate: Update to 0.10. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus 2d9da70bbe
gnu: r-reshape2: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus c2a9e99134
gnu: r-stringi: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus 03f72a1e1f
gnu: r-matrix: Update to 1.2-7.1. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus 9e087a1fde
gnu: r-colorspace: Update to 1.2-7. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus 062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 8e1369f19a
gnu: r-rmarkdown: Update to 1.1. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 557a4b8e61
gnu: Add r-kernsmooth. 
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
 2016-10-26 09:28:07 +02:00
Mark H Weaver abcf4858cd
Merge branch 'master' into core-updates 2016-10-12 09:28:14 -04:00
Ben Woodcroft a751afb217
gnu: r-mgcv: Update to 1.8-15. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-15.
 2016-10-08 22:29:58 +10:00
Leo Famulari 9c2130757c
Merge branch 'master' into core-updates 2016-10-03 17:08:05 -04:00
Ricardo Wurmus 88cf917b74
gnu: r-plotly: Update to 4.5.2. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.2.
[propagated-inputs]: Remove r-plyr; remove r-viridis; add r-dplyr; add
r-lazyeval; add r-purrr; add r-tibble; add r-viridislite.
 2016-10-02 17:31:39 +02:00
Ricardo Wurmus a3c6445be5
gnu: Add r-purrr. 
* gnu/packages/statistics.scm (r-purrr): New variable.
 2016-10-02 17:31:39 +02:00
Ricardo Wurmus c6ab73e8ff
gnu: Add r-viridislite. 
* gnu/packages/statistics.scm (r-viridislite): New variable.
 2016-10-02 17:31:36 +02:00
Ludovic Courtès 79355ae3e8
Merge branch 'master' into core-updates 2016-09-30 12:05:27 +02:00
Alex Kost b94a6ca074
gnu: Add and use gettext-minimal. 
* gnu/packages/gettext.scm (gnu-gettext): Rename to...
(gettext-minimal): ... this.  Adjust synopsis and description.
(gnu-gettext): Inherit from it.
(po4a): Use 'gettext-minimal' instead of 'gnu-gettext'.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/apl.scm: Likewise.
* gnu/packages/attr.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/commencement.scm: Likewise.
* gnu/packages/crypto.scm: Likewise.
* gnu/packages/databases.scm: Likewise.
* gnu/packages/disk.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/education.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/enlightenment.scm: Likewise.
* gnu/packages/fcitx.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gkrellm.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/ibus.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/iso-codes.scm: Likewise.
* gnu/packages/kde-frameworks.scm: Likewise.
* gnu/packages/kodi.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/man.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mono.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/nano.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/sawfish.scm: Likewise.
* gnu/packages/statistics.scm: Likewise.
* gnu/packages/terminals.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/webkit.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wine.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
 2016-09-28 17:54:50 +03:00
Ricardo Wurmus 9e330278ee
gnu: Add r-batchjobs. 
* gnu/packages/statistics.scm (r-batchjobs): New variable.
 2016-09-26 03:25:11 +02:00
Ricardo Wurmus dc4fb16d25
gnu: Add r-fail. 
* gnu/packages/statistics.scm (r-fail): New variable.
 2016-09-26 03:25:06 +02:00
Ricardo Wurmus cd26ec3bbf
gnu: Add r-bbmisc. 
* gnu/packages/statistics.scm (r-bbmisc): New variable.
 2016-09-26 03:25:02 +02:00
Ricardo Wurmus 929d4aaea1
gnu: Add r-checkmate. 
* gnu/packages/statistics.scm (r-checkmate): New variable.
 2016-09-26 03:24:59 +02:00
Ricardo Wurmus 0d90462fa3
gnu: Add r-backports. 
* gnu/packages/statistics.scm (r-backports): New variable.
 2016-09-26 03:24:55 +02:00
Ricardo Wurmus 8e1bfc7e8c
gnu: Add r-sendmailr. 
* gnu/packages/statistics.scm (r-sendmailr): New variable.
 2016-09-26 03:24:50 +02:00
Ricardo Wurmus 0c77fd50f8
gnu: Add r-pheatmap. 
* gnu/packages/statistics.scm (r-pheatmap): New variable.
 2016-09-26 03:24:44 +02:00
Ricardo Wurmus 092197a548
gnu: Add r-matrix. 
* gnu/packages/statistics.scm (r-matrix): New variable.
 2016-09-26 03:21:32 +02:00
Ricardo Wurmus 2d21d44dbd
gnu: Add r-hmisc. 
* gnu/packages/statistics.scm (r-hmisc): New variable.
 2016-09-26 03:21:13 +02:00
Ricardo Wurmus 2213730c5b
gnu: Add r-rpart. 
* gnu/packages/statistics.scm (r-rpart): New variable.
 2016-09-26 03:20:52 +02:00
Ricardo Wurmus b78891b012
gnu: r-rmarkdown: Ensure temporary files can be deleted. 
* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Add phase
"copy-files-without-mode".
 2016-09-21 21:38:39 +02:00
Ricardo Wurmus c533589c66
gnu: Add r-e1071. 
* gnu/packages/statistics.scm (r-e1071): New variable.
 2016-09-16 17:29:48 +02:00
Ricardo Wurmus c72c12491a
gnu: Add r-rtsne. 
* gnu/packages/statistics.scm (r-rtsne): New variable.
 2016-09-16 17:29:48 +02:00
Ricardo Wurmus 87a7c55ebd
gnu: r-rmarkdown: Update to 1.0. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.0.
[propagated-inputs]: Add "r-jsonlite" and "r-base64enc".
 2016-09-12 17:44:48 +02:00
Ricardo Wurmus de1eebd7d7
gnu: r-dplyr: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.5.0.
 2016-09-12 17:44:48 +02:00
Ricardo Wurmus 5e67507273
gnu: r-rcpparmadillo: Update to 0.7.400.2.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.400.2.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.400.2.0.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus 1b7f85f52d
gnu: r-tidyr: Update to 0.6.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.0.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus c3253ce1b5
gnu: r-irlba: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.1.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus f791b689b2
gnu: r-dt: Update to 0.2. 
* gnu/packages/statistics.scm (r-dt): Update to 0.2.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus 7931531a23
gnu: r-sparsem: Update to 1.72. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.72.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus b9ab3b08b8
gnu: r-lambda-r: Update to 1.1.9. 
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.1.9.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus 27f10d3db2
gnu: r-futile-logger: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-futile-logger): Update to 1.4.3.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus fce4dfd82e
gnu: r-lattice: Update to 0.20-34. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-34.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus bdfc2c954e
gnu: r-plotrix: Update to 3.6-3. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-3.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus 8c6e2b843e
gnu: r-readr: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-readr): Update to 1.0.0.
[propagated-inputs]: Add "r-hms", "r-tibble", and "r-r6".
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus b90314b4f8
gnu: Add r-hms. 
* gnu/packages/statistics.scm (r-hms): New variable.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus a589acfb08
gnu: Add r-tibble. 
* gnu/packages/statistics.scm (r-tibble): New variable.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus 348bb8d663
gnu: r-withr: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-withr): Update to 1.0.2.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus 3bb9708a7f
gnu: r-devtools: Update to 1.12.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.12.0.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus e2cfac445e
gnu: r-rstudioapi: Update to 0.6. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.6.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus e58498b6ee
gnu: r-httr: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-httr): Update to 1.2.1.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus 130c3c8b93
gnu: r-openssl: Update to 0.9.4. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.4.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus 81147fe886
gnu: r-rversions: Update to 1.0.3. 
* gnu/packages/statistics.scm (r-rversions): Update to 1.0.3.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus 03306201a7
gnu: r-multitaper: Update to 1.0-12. 
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-12.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus e2ad0228fc
gnu: r-xml2: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.0.0.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus ef82bd5888
gnu: r-r6: Update to 2.1.3. 
* gnu/packages/statistics.scm (r-r6): Update to 2.1.3.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus 344d5323d6
gnu: r-crayon: Update to 1.3.2. 
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.2.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus ad28491e12
gnu: r-knitr: Update to 1.14. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.14.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus 2d037a2d68
gnu: r-mime: Update to 0.5. 
* gnu/packages/statistics.scm (r-mime): Update to 0.5.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus 5b67bd6e8f
gnu: r-dbi: Update to 0.5-1. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.5-1.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus 6d6a917a16
gnu: r-lazyeval: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.0.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus bf1e9e4517
gnu: r-stringr: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-stringr): Update to 1.1.0.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus 1f94ede8ea
gnu: r-stringi: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.1.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus deb265a7b3
gnu: r-plyr: Update to 1.8.4. 
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.4.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus 8b2f96e73a
gnu: r-permute: Update to 0.9-4. 
* gnu/packages/statistics.scm (r-permute): Update to 0.9-4.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus 21f45c9d9e
gnu: r-mgcv: Update to 1.8-14. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-14.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus cb27d6ba4e
gnu: r-rcpp: Update to 0.12.7. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.7.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus 5aaa12dfb5
gnu: r-digest: Update to 0.6.10. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.10.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus 3e4c0c6662
gnu: Add r-segmented. 
* gnu/packages/statistics.scm (r-segmented): New variable.
 2016-09-12 17:44:41 +02:00
Ben J Woodcroft 912c7a840a
gnu: r: Update to 3.3.1. 
* gnu/packages/statistics.scm (r): Update to 3.3.1.
 2016-09-09 21:54:41 +10:00
Ben J Woodcroft 71e98ca571
gnu: r: Add openblas input. 
* gnu/packages/statistics.scm (r)[inputs]: Add openblas.
[arguments]: Adapt configure flags.
 2016-09-09 21:54:20 +10:00
Ricardo Wurmus 8b52167e77
gnu: python-statsmodels: Fix tests. 
* gnu/packages/statistics.scm (python-statsmodels): Add patch to fix tests.
(python2-statsmodels)[propagated-inputs]: Add python2-pytz.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-08-04 13:40:13 +02:00
Efraim Flashner df2c7563ff
gnu: pspp: Update to 0.10.2. 
* gnu/packages/statistics.scm (pspp): Update to 0.10.2.
 2016-07-24 15:43:35 +03:00
Ricardo Wurmus 66cf0f054d
gnu: Add r-domc. 
* gnu/packages/statistics.scm (r-domc): New variable.
 2016-07-07 10:46:39 +02:00
Ricardo Wurmus 9003957e53
gnu: Add r-multitaper. 
* gnu/packages/statistics.scm (r-multitaper): New variable.
 2016-07-07 10:46:30 +02:00
Ricardo Wurmus fdd0f7b2a3
gnu: Add r-ade4. 
* gnu/packages/statistics.scm (r-ade4): New variable.
 2016-07-07 10:46:05 +02:00
Ben Woodcroft 975cd29a98
gnu: r-ggplot2: Add r-svglite to propagated-inputs. 
* gnu/packages/statistics.scm (r-ggplot2)[propagated-inputs]: Add
r-svglite.
 2016-07-06 15:17:29 +08:00
Ben Woodcroft 3aebedcc02
gnu: Add r-svglite. 
* gnu/packages/statistics.scm (r-svglite): New variable.
 2016-07-06 15:17:29 +08:00
Ben Woodcroft c5940b157e
gnu: Add r-gdtools. 
* gnu/packages/statistics.scm (r-gdtools): New variable.
 2016-07-06 15:17:29 +08:00
Ben Woodcroft c7f04517a6
gnu: Add r-glmnet. 
* gnu/packages/statistics.scm (r-glmnet): New variable.
 2016-07-01 09:01:20 +10:00
Ricardo Wurmus 05e9f30f1e
gnu: r: Add pango to inputs. 
* gnu/packages/statistics.scm (r)[inputs]: Remove cairo, add pango.
 2016-06-28 09:36:00 +02:00
Ben Woodcroft 0846620803
gnu: Add r-mgcv. 
* gnu/packages/statistics.scm (r-mgcv): New variable.
 2016-06-21 21:29:17 +10:00
Ben Woodcroft de682e6f0f
gnu: Add r-permute. 
* gnu/packages/statistics.scm (r-permute): New variable.
 2016-06-21 21:29:17 +10:00
Ricardo Wurmus aa3b391092
gnu: Add r-runit. 
* gnu/packages/statistics.scm (r-runit): New variable.
 2016-05-31 16:24:59 +02:00
Ricardo Wurmus 4ce3c2872b
gnu: Add r-knitrbootstrap. 
* gnu/packages/statistics.scm (r-knitrbootstrap): New variable.
 2016-05-31 16:18:14 +02:00
Roel Janssen 031cf6b65e
gnu: Add r-zoo. 
* gnu/packages/statistics.scm (r-zoo): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-23 12:36:38 -04:00
Ricardo Wurmus 813efdded1
gnu: r-rcpparmadillo: Update to 0.6.700.6.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus c969453e1c
gnu: r-plotly: Update to 3.6.0. 
* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 95513f284f
gnu: r-matrixstats: Update to 0.50.2. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus b8f6a97ebd
gnu: r-r-rsp: Update to 0.30.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus f0c56a2411
gnu: r-rmarkdown: Update to 0.9.6. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 2f7ac060ff
gnu: r-plotrix: Update to 3.6-2. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 133f27b06a
gnu: r-devtools: Update to 1.11.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 3624ad7150
gnu: r-git2r: Update to 0.15.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus c1e2c9d41a
gnu: r-openssl: Update to 0.9.3. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 383f6337a0
gnu: r-testthat: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 1b206aeb00
gnu: r-knitr: Update to 1.13. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.13.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus d5130e6345
gnu: r-highr: Update to 0.6. 
* gnu/packages/statistics.scm (r-highr): Update to 0.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus df25b0048a
gnu: r-formatr: Update to 1.4. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.4.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 84e5368719
gnu: r-evaluate: Update to 0.9. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.9.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 9a0ccf43cc
gnu: r-bh: Update to 1.60.0-2. 
* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus a76b3f6914
gnu: r-dbi: Update to 0.4-1. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.4-1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus eb1a5b65c0
gnu: r-rcpp: Update to 0.12.5. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5.
 2016-05-20 15:18:23 +02:00
Ben Woodcroft 0947698c42 gnu: Add r-biased-urn. 
* gnu/packages/statistics.scm (r-biased-urn): New variable.
 2016-05-19 22:13:43 +10:00
Roel Janssen b5f13fdb96
gnu: Add r-mvtnorm. 
* gnu/packages/statistics.scm (r-mvtnorm): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-07 14:16:18 -04:00
Ricardo Wurmus e42eb908f6 gnu: r: Update to 3.3.0. 
* gnu/packages/statistics.scm (r): Update to 3.3.0.
[inputs]: Add curl and tzdata.
[arguments]: Set TZDIR in "set-timezone" phase.
 2016-05-06 14:58:19 +02:00
Roel Janssen 52ad9cb60e
gnu: Add r-estimability. 
* gnu/packages/statistics.scm (r-estimability): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-05 20:42:36 -04:00
Roel Janssen 82047474ea
gnu: Add r-coda. 
* gnu/packages/statistics.scm (r-coda): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-05 20:23:48 -04:00
Ricardo Wurmus b74f64a960 gnu: Add r-xnomial. 
* gnu/packages/statistics.scm (r-xnomial): New variable.
 2016-05-02 11:10:38 +02:00
Ricardo Wurmus c5ad883b16 gnu: r-rcpparmadillo: Update to 0.6.700.3.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.3.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.3.0.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 2c81794ed9 gnu: r-plotly: Update to 3.4.13. 
* gnu/packages/statistics.scm (r-plotly): Update to 3.4.13.
[propagated-inputs]: Add r-hexbin, r-scales, and r-tidyr.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 59bf9f4e6b gnu: r-httr: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-httr): Update to 1.1.0.
[propagated-inputs]: Add r-openssl.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 44d792c2e9 gnu: r-r6: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-r6): Update to 2.1.2.
[propagated-inputs]: Remove.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 99eca2b18b gnu: r-testthat: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-testthat): Update to 1.0.0.
[propagated-inputs]: Add r-magrittr, r-praise, and r-r6.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 0fc4213642 gnu: r-viridis: Update to 0.3.4. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.3.4.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 3646bf2082 gnu: r-matrixstats: Update to 0.50.1. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.1.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 799ef55b15 gnu: r-r-rsp: Update to 0.21.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.21.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 801e9e7399 gnu: r-r-utils: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.3.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus b2436f6af9 gnu: r-r-oo: Update to 1.20.0. 
* gnu/packages/statistics.scm (r-r-oo): Update to 1.20.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 887d45d466 gnu: r-r-methodss3: Update to 1.7.1. 
* gnu/packages/statistics.scm (r-r-methodss3): Update to 1.7.1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 1e4abc0fee gnu: r-xml: Update to 3.98-1.4. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.4.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 1647e10ebd gnu: r-gridextra: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-gridextra): Update to 2.2.1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 810e4195fd gnu: r-gtable: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-gtable): Update to 0.2.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 0d1ffadc1d gnu: r-rmarkdown: Update to 0.9.5. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.5.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 408c2d6937 gnu: r-plotrix: Update to 3.6-1. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus cf3568a05d gnu: r-devtools: Update to 1.11.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.11.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus b5c574c61d gnu: r-rstudioapi: Update to 0.5. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.5.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 06a4af1283 gnu: r-git2r: Update to 0.14.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.14.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 904fa49de6 gnu: r-roxygen2: Update to 5.0.1. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 5.0.1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 2448c723b7 gnu: r-cluster: Update to 2.0.4. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.4.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 618dbdd7c0 gnu: r-memoise: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-memoise): Update to 1.0.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 8e4edf0802 gnu: r-microbenchmark: Update to 1.4-2.1. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-2.1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus bb61b765c0 gnu: r-knitr: Update to 1.12.3. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.12.3.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 1cfa88e988 gnu: r-formatr: Update to 1.3. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.3.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 49089e06ec gnu: r-evaluate: Update to 0.8.3. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.8.3.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 2c8fa9d702 gnu: r-bh: Update to 1.60.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus b268e49691 gnu: r-ggplot2: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.1.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus cf2e19a95a gnu: r-scales: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-scales): Update to 0.4.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 9ee6d314c4 gnu: r-stringi: Update to 1.0-1. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.0-1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus a99bed8cf3 gnu: r-munsell: Update to 0.4.3. 
* gnu/packages/statistics.scm (r-munsell): Update to 0.4.3.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus fe2087ccd8 gnu: r-digest: Update to 0.6.9. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.9.
[arguments]: Disable tests and vignettes.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus bae7953852 gnu: Add r-hexbin. 
* gnu/packages/statistics.scm (r-hexbin): New variable.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 94b7e9b7b4 gnu: Add r-tidyr. 
* gnu/packages/statistics.scm (r-tidyr): New variable.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus c26c062838 gnu: Add r-openssl. 
* gnu/packages/statistics.scm (r-openssl): New variable.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 35b2001a14 gnu: Add r-praise. 
* gnu/packages/statistics.scm (r-praise): New variable.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus c587725a69 gnu: r-rcpp: Update to 0.12.4. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.4.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 8694dca8f3 gnu: r: Update to 3.2.5. 
* gnu/packages/statistics.scm (r): Update to 3.2.5.
 2016-04-19 14:44:29 +02:00
Ricardo Wurmus 07f911bab7 gnu: Add r-igraph. 
* gnu/packages/statistics.scm (r-igraph): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus b783ff7833 gnu: Add r-nmf. 
* gnu/packages/statistics.scm (r-nmf): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 790034bd23 gnu: Add r-rngtools. 
* gnu/packages/statistics.scm (r-rngtools): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 2d0f7d80bf gnu: Add r-registry. 
* gnu/packages/statistics.scm (r-registry): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 3a6607f00b gnu: Add r-pkgmaker. 
* gnu/packages/statistics.scm (r-pkgmaker): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus dada39aaed gnu: Add r-irlba. 
* gnu/packages/statistics.scm (r-irlba): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus b20abbcd74 gnu: Add r-latticeextra. 
* gnu/packages/statistics.scm (r-latticeextra): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus a73f4cd18b gnu: Add r-xtable. 
* gnu/packages/statistics.scm (r-xtable): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 97ee973daa gnu: Add r-locfit. 
* gnu/packages/statistics.scm (r-locfit): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus b1acb44573 gnu: Add r-formula. 
* gnu/packages/statistics.scm (r-formula): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 0837dd0737 gnu: Add r-foreign. 
* gnu/packages/statistics.scm (r-foreign): New variable.
 2016-04-14 14:53:30 +02:00
Ricardo Wurmus 0926b8779f gnu: Add r-cluster. 
* gnu/packages/statistics.scm (r-cluster): New variable.
 2016-04-14 14:53:30 +02:00
Ricardo Wurmus b4d6f4089f gnu: Add r-acepack. 
* gnu/packages/statistics.scm (r-acepack): New variable.
 2016-04-14 14:53:30 +02:00
John Darrington 0b65f1a013 gnu: Move pspp from maths.scm to statistics.scm 
* gnu/packages/maths.scm (pspp): Deleted.
* gnu/packages/statistics.scm (pspp): New variable.
 2016-04-04 07:15:14 +02:00
Ricardo Wurmus 6499b70ebf gnu: Add r-ztable. 
* gnu/packages/statistics.scm (r-ztable): New variable.
 2016-04-01 11:46:19 +02:00
Roel Janssen fa9f0e6c25 gnu: r-devtools: Update to 1.10.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.10.0.
   (r-devtools)[propagated-inputs]: Add r-withr.
 2016-03-30 12:02:40 +02:00
Roel Janssen a080e50c15 gnu: Add r-withr. 
* gnu/packages/statistics.scm (r-withr): New variable.
 2016-03-30 12:02:28 +02:00
Ricardo Wurmus 71cafa0472 gnu: Add r-doparallel. 
* gnu/packages/statistics.scm (r-doparallel): New variable.
 2016-03-21 15:54:05 +01:00
Ricardo Wurmus b2cdb0271b gnu: Add r-foreach. 
* gnu/packages/statistics.scm (r-foreach): New variable.
 2016-03-21 15:54:05 +01:00
Ricardo Wurmus 7a6f5f0323 gnu: Add r-codetools. 
* gnu/packages/statistics.scm (r-codetools): New variable.
 2016-03-21 15:54:05 +01:00
Ricardo Wurmus 264df1a49d gnu: Add r-iterators. 
* gnu/packages/statistics.scm (r-iterators): New variable.
 2016-03-21 15:54:05 +01:00
Andreas Enge aad375c9bc gnu: statistics: Remove import of unused texlive module. 
* gnu/packages/statistics.scm: Do not import (gnu packages texlive).
 2016-03-09 22:36:45 +01:00
Pjotr Prins b70fa3c7f7 gnu: r-ggplot2: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.0.0.
 2016-03-01 19:47:24 +02:00
Efraim Flashner 5ad87e5bb5 gnu: python-patsy: Define 'python2-variant'. 
* gnu/packages/statistics.scm (python-patsy)[properties]: New field.
(python2-patsy): Use 'strip-python2-variant'.
 2016-02-22 21:59:02 +02:00