c4516ad206
gnu: python-pytest-xdist: Remove needless input python-apipkg.
...
* gnu/packages/python.scm (python-pytest-xdist): Remove input
python-apipkg.
2016-11-15 22:31:29 +01:00
b52ad3714a
gnu: python-subunit, python-testrepository: Fix inputs
...
* gnu/packages/python.scm (python-subunit, python2-subunit):
[propagated-inputs]:: Add python-extras, remove python-testtools, move
python-testscenarios to [native-inputs]. (python-testrepository,
python2-testrepository): [native-inputs] move python-fixtures and
python-subunit to [propagated-inputs]
2016-11-15 22:31:29 +01:00
521b77729e
gnu: python-scripttest: Correct inputs.
...
python-pytest is only required for testing, not at run-time.
* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
[propagated-inputs] Move python-pytest to [native-inputs].
2016-11-15 22:31:28 +01:00
abcc7a0eb9
gnu: python-pandas: Fix build.
...
* gnu/packages/python.scm (python-pandas): Add python-cython to
native-inputs.
2016-11-15 22:31:27 +01:00
e116d100fd
gnu: openstack: Correct inputs.
...
* gnu/packages/openstack.scm (python-os-testr) Propagate input
python-subunit, change all other inputs to native-inputs.
(python-mox3): Remove needless input python-six.
(python-stevedore, python-requests-mock): Move python-pbr to
native-inputs.
2016-11-15 22:31:27 +01:00
48160559a1
gnu: thefuck: Fix build.
...
Requires setuptools >= 17.1 due to some features used, while our
python currently only includes 12.0.
* gnu/packages/admin.scm (thefuck): Add setuptools to native-inputs.
2016-11-15 22:31:26 +01:00
a08a835034
gnu: vdirsyncer: Fix build by setting correct PYTHONPATH.
...
For thus, use add-installed-pythonpath.
* gnu/packages/dav.scm (vdirsyncer): set PYTHONPATH using
add-installed-pythonpath.
2016-11-15 22:31:25 +01:00
eee5cd0440
gnu: python-ipython: Fix build.
...
* gnu/packages/python.scm (python-ipython, python2-ipython) [check,
install-doc] set PYTHONPATH prior to running tests.
2016-11-15 22:31:24 +01:00
d548e6aa06
gnu: python-scipy: Fix build.
...
* gnu/packages/python.scm (python-scipy) Use add-installed-pythonpath. Add
dummy newlines character to string to make emacs happy.
2016-11-15 22:31:23 +01:00
ca33a3ad97
gnu: python-matplotlib: Fix build.
...
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Correct
inputs. [install-doc] set PYTHONPATH prior to building docs.
2016-11-15 22:31:23 +01:00
2efabc5589
gnu: python-numpy-bootstrap, python-numpy: Fix build.
...
* gnu/packages/python.scm (python-numpy-bootstrap): Correct inputs, use
modify-phases, add dummy newlines character to string to make emacs happy,
set PYTHONPATH prior to running tests. (python-numpy): propagate inputs, set
PYTHONPATH prior to building docs.
2016-11-15 22:31:22 +01:00
9e8c6a37db
gnu: python-fonttools: Remove intervening directory in site-packges.
...
* gnu/packages/python.scm (python-fonttools): Add phase patch-setuppy.
2016-11-15 22:31:21 +01:00
b72ac1b54b
gnu: python2-pysnptools: Correct inputs.
...
dateutil, pytz, and six do not occur in the code.
Remove python-dateutil, python-pytz, python-six from inputs;
Move python-cython to native-inputs; move python-pandas to
propagated-inputs.
2016-11-15 22:31:21 +01:00
e408ffc302
gnu: python-zope-testing: Remove needless input.
...
* gnu/packages.python.scm (python-zope-testing): Remove
python-zope-interface from native-imports.
2016-11-15 22:31:20 +01:00
47f77210fc
gnu: python-zope-schema: Add missing inputs.
...
* gnu/packages.python.scm (python-zope-schema): Add python-coverage and
python-nose to native-inputs.
2016-11-15 22:31:19 +01:00
05c2fd3685
gnu: python-pytest-flakes: Fix build.
...
* python.scm (python-pytest-flakes): Set PYTHONPATH prior to running tests.
2016-11-15 22:31:18 +01:00
6151120a71
gnu: python-pillow: Fix build.
...
* gnu/packages/python.scm (python-pillow)[check-installed]: Add
installed site-package to PYTHONPATH.
2016-11-15 22:31:17 +01:00
5e1c9d242a
gnu: python-singledispatch: correct inputs.
...
python-six is only required for conversion, not at run-time
* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
[inputs] Move python-six to [native-inputs].
2016-11-15 22:31:17 +01:00
d2a8db92fe
gnu: python-pbr: Rework bootstrapping.
...
For breaking the cyclic build, formerly a separate (older) version was used
for bootstrapping. Now we use the same version just without tests and without
test dependencies.
* gnu/packages/python.scm (python-pbr-0.11, python2-pbr-0.11):
replace by … (python-pbr-minimal, python2-pbr-minimal).
(python-pbr) inherit from python-pbr-minimal, adding the requirements for
testing and building the documentation.
(python-fixtures) [native-inputs] Use python-pbr-minimal here.
(python-testrepository): [native-inputs] Add it here, it was a missing
dependency.
2016-11-15 22:31:16 +01:00
b2e66edf52
gnu: python-testrepositoryfixture: Correct inputs.
...
python-fixtures is required only for building.
* gnu/packages/python.scm (python-testrepository) [propagated-inputs] move
python-fixtures to [native-inputs].
2016-11-15 22:31:15 +01:00
424f0a4175
gnu: python-fixture: Enable tests.
...
* gnu/packages/python.scm (python-fixtures) [arguments] remove
keyword `#:tests?`.
2016-11-15 22:31:14 +01:00
ae92caddc5
gnu: python-fixture: Correct inputs.
...
python-pbr is required only for building.
* gnu/packages/python.scm (python-fixtures) [propagated-inputs] move
python-pbr-0.11 to [native-inputs].
2016-11-15 22:31:13 +01:00
6986669012
gnu: python-hdf5: Correct inputs.
...
According to setup.py python-six is requried at run-time, thus has to be a
propagated input.
* gnu/packages/python.scm (python-hdf5) [inputs]: Move `python-six` to
[propagated-inputs].
2016-11-15 22:31:12 +01:00
9820a02858
gnu: python-h5py: Remove needless "python2-variant" property.
...
* gnu/packages/python.scm (python-h5py) [python2-variant]: Remove
property. (python2-h5py): Don't strip property "strip-python2-variant".
2016-11-15 22:31:12 +01:00
d9a6e221e2
gnu: python-ccm: Update synopsis and description.
...
* gnu/packages/python.scm (python-ccm): Update synopsis and description.
2016-11-15 22:31:11 +01:00
e165f137d8
gnu: python-ccm: Add missing input python-psutil.
...
* gnu/packages/python.scm (python-ccm) [propagated-inouts]: Add
python-psutil.
2016-11-15 22:31:10 +01:00
ef7451131a
gnu: python-sphinx-rtd-theme: Remove inputs.
...
This package is a plugin for python-sphinx, it does not require python-sphinx
nor docutils, but is an add-on for python-sphinx and should not be installed
by it's own.
* gnu/packages/python/.scm (python-sphinx-rtd-theme)[inputs]: Remove.
2016-11-15 22:31:09 +01:00
ce40b38395
gnu: python-pytest-cov: Use upstream options for testing.
...
* gnu/packages/python.scm (python-pytest-cov): Replace phase "check"
by one passing the options found in upstream's tox.ini-file
to "python setup.py check".
2016-11-15 22:31:08 +01:00
b3e8b4bd0f
gnu: scons: Do not use setuptools for building.
...
* gnu/packages/python.scm (scons): Set "#:use-setuptools" to #f.
2016-11-15 22:31:07 +01:00
f2516de2fc
gnu: Fix python inputs, part 7: Ensure python-cython is a native-input.
...
* gnu/packages/audio.scm (python-pyliblo): [inputs] Move python-cyton to
[native-inputs].
* gnu/packages/bioinformatics.scm (python2-pybedtools): dito.
* gnu/packages/music.scm (beast, python-pyportmidi): dito.
* gnu/packages/python.scm (python2-fastlmm, python-kivy): dito.
2016-11-15 22:31:07 +01:00
328bb95d35
gnu: Fix python inputs, part 6: some inputs become native-inputs.
...
This patch handles the inputs which are native-inputs almost always like nose,
sphinx, and pytest.
* gnu/packages/python.scm
(python-jsonschema, python-numpydoc, python-mccabe, python-mistune,
python-ptyprocess, python-webob, python-apipkg, python-flake8-2.2.4)[inputs]
change to [native-inputs].
(python-flake8, tox) Likewise, add a comment.
(python-scikit-learn, python-numpy)[native-inputs] New element, move
python-nose here.
(python2-kombu)[inputs] change to [native-inputs], use python-kombu's
package-native-inputs.
2016-11-15 22:31:06 +01:00
482d95918e
gnu: Fix python inputs, part 5: some inputs become propagated-inputs
...
* gnu/packages/openstack.scm
(python-os-client-config)[inputs] change to
[native-inputs]. [propagated-inputs]: New element, move python-appdirs,
python-pyyaml here.
(python-git-review)[propagated-inputs]: New element, move python-requests
here.
* gnu/packages/python.scm
(python-rpy2)[propagated-inputs]: New element, move python-six here.
(python-xcffib)[inputs] move python-six to [propagated-inputs].
(python-flake8)[propagated-inputs]: New element, move python-pep8,
python-pyflakes, python-mccabe here.
(python-flake8-2.2.4)[propagated-inputs]: New element, move python-pep8,
python-pyflakes, python-mccabe here.
(python-pytest)[propagated-inputs]: New element, move python-py here.
(python-tox)[propagated-inputs]: New element, move all inputs except of
python-pytest here.
(python-botocore)[propagated-inputs]: New element, move python-dateutil,
python-docutils, python-jmespath here.
(awscli)[propagated-inputs]: New element, move python-colorama,
python-botocore, python-s3transfer, python-docutils, python-rsa here.
(python-mako)[propagated-inputs]: New element, move python-markupsafe here.
* gnu/packages/qemu.scm(python-libvirt)[propagated-inputs]: New element, move
python-lxml here.
2016-11-15 22:31:05 +01:00
dae73d9b9a
gnu: Fix python inputs, part 3: all native-inputs become propagated-inputs.
...
This patch contains the changes in python.scm where all [native-inputs]
are changed to [propagated-inputs].
* gnu/packages/python.scm.scm (python-feedgenerator): All [native-inputs] are
changed to [propagated-inputs].
2016-11-15 22:31:04 +01:00
e7881f3db4
gnu: Fix python inputs, part 2: all inputs become native-inputs.
...
This patch contains the changes where all [inputs] are changed to
[native-inputs].
* gnu/packages/python.scm (python-pytest, python-fixtures,
python-testrepository, python-virtualenv): All [inputs] are changed to
[native-inputs].
* gnu/packages/openstack.scm (python-bandit, python-debtcollector,
python-hacking, python-tempest-lib, python-oslo.config, python-oslo.context,
python-oslo.i18n, python-oslo.log, python-oslo.serialization,
python-oslosphinx, python-oslotest, python-oslo.utils): Likewise.
2016-11-15 22:31:03 +01:00
f22efa0152
gnu: Fix python inputs, part 1: all inputs become propagated-inputs.
...
This patch contains the changes where all [inputs] are changed to
[propagated-inputs]
* gnu/packages/python.scm (python-passlib, python-paramiko, python-ccm,
python-babel, python-keyring python-pandas, python-tzlocal,
python-parse-type, python-nose2, python-pytest, python-pytest-mock,
python-pytest-xdist, python-scripttest, python-testtools, python-pytest-cov,
python-testscenarios, python-pbr-0.11, python-oauthlib, python-jinja2,
python-sphinx, python-tzlocal, python-bugz, python2-pytest-mock, behave,
pelican, sqlalchemy-utils, python-pygridtools, python-urwidtrees,
python-tornado, python2-tornado, python-debian, python-execnet,
python-pytest-cache, pytest-localserver, python-clint, python-rply,
python-hy, python-rauth, python-rsa, python-celery, python-vobject, s3cmd,
python-prompt-toolkit, ptpython, python-requests-oauthlib, python-stem,
python-binaryornot, python2-binaryornot, python-nltk, python-pymongo,
python-schematics, python-url, python2-url, python-freezegun,
python-glances, python-graphql-core, python-graphql-relay, python-graphene,
python-nautilus, python-s3transfer): All [inputs] become
[propagated-inputs].
* gnu/packages/bioinformatics.scm (python-biopython): Likewise.
* gnu/packages/django.scm (pytest-django): Likewise.
* gnu/packages/mail.scm (python-mailmanclient): Likewise.
* gnu/packages/password-utils.scm (python-bcrypt): Likewise.
* gnu/packages/propbuf.scm (python-protobuf): Likewise.
* gnu/packages/rdf.scm (python-rdflib): Likewise.
SQACH all become propagated
2016-11-15 22:31:03 +01:00
b41a05ce49
gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs).
...
Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".
* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
configure-flags. (python-pillow) remove phase
"disable-egg-generation". (python-libarchive-c) Remove patching
setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
"prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
"disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
2016-11-15 22:31:02 +01:00
d8013ee221
gnu: Remove needless inputs python-pip and python2-pip.
...
This is installed together with Python 3 anyway and for our build
of Python 2.
* gnu/packages/python.scm (python2-fixtures): [inputs] remove "python-pip".
* gnu/packages/pdf.scm (python2-reportlab): [native-inputs] remove
"python2-pip". (python-reportlab)[properties]: remove "python2-variant".
2016-11-15 22:31:01 +01:00
f210e94432
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4b)
...
This patch contains the changes in python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited packge was the only change.
Change this to not inherit and remove the new needless call to
"strip-python2-variant (where applicable).
* gnu/packages/python.scm.scm: Remove inheriting Python 2 packages inheriting
from a Python 3 package if adding python-setuptools respective
python2-setuptools to [inputs], [native-inputs] and [propagated-inputs] have
been the sole reason for inheriting. Remove now needless [properties]
"python2-variant" where applicable.
(python2-lockfile, python2-keyring, python2-dateutil-2,
python2-parsedatetime, python2-pandas, python2-pyicu, python2-pytest-cov,
python2-pytest-runner, python2-pytest-xdist, python2-cov-core,
python2-itsdangerous, python2-numexpr, python2-q, python2-sqlalchemy-utils,
python2-alembic, python2-beautifulsoup4, python2-msgpack, python2-ipaddress,
python2-atomicwrites, python2-apipkg, python2-execnet, python2-pytest-cache,
python2-wtforms, python2-mako, python2-waitress, python2-wsgiproxy2,
python2-pyquery, python2-webtest, python2-translitcodec, python2-editor,
python2-sphinxcontrib-programoutput, python2-psycopg2, python2-vobject,
python2-flask, python2-cookies, python2-responses, python2-future,
python2-ply, python2-wcwidth, python2-prompt-toolkit, python2-jedi,
python2-requests-oauthlib, python2-pyserial, python2-nltk, python2-pymongo,
python2-sh, python2-schematics, python2-publicsuffix, python2-publicsuffix2,
python2-url, python2-freezegun, python2-cachecontrol, python2-lit,
python2-pytest-pep8, python2-pytest-flakes, python2-glances,
python2-betamax, python2-file, python2-flask-babel, python2-furl,
python2-imagesize python2-orderedmultidict, python2-pycodestyle,
python2-vcversioner, python2-graphql-core, python2-graphql-relay,
python2-validictory): Remove neesless input "python2-setuptools", don't
inherit, don't call strip-python2-variant.
(python-lockfile, python-keyring, python-dateutil-2, python-parsedatetime,
python-pandas, python-pyicu, python-pytest-cov, python-pytest-runner,
python-pytest-xdist, python-cov-core, python-itsdangerous, python-numexpr,
python-q, python-sqlalchemy-utils, python-alembic, python-beautifulsoup4,
python-msgpack, python-ipaddress, python-atomicwrites, python-apipkg,
python-execnet, python-pytest-cache, python-wtforms, python-mako,
python-waitress, python-wsgiproxy2, python-pyquery, python-webtest,
python-translitcodec, python-editor, python-sphinxcontrib-programoutput,
python-psycopg2, python-vobject, python-flask, python-cookies,
python-responses, python-future, python-ply, python-wcwidth,
python-prompt-toolkit, python-jedi, python-requests-oauthlib,
python-pyserial, python-nltk, python-pymongo, python-sh, python-schematics,
python-nltk, python-publicsuffix2, python-cachecontrol, python-lit,
python-pytest-pep8, python-pytest-flakes, python-glances, python-betamax,
python-file, python-flask-babel, python-furl, python-imagesize,
python-orderedmultidict, python-pycodestyle, python-vcversioner,
python-graphql-core, python-graphql-relay, python-validictory): Remove
"python2-variant" property.
2016-11-15 22:29:00 +01:00
5c31f4aa7c
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)
...
This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.
Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
python-twobitreader, python2-twobitreader,
python-plastid, python2-plastid,
python2-pybigwig,
python2-screed,
sra-tools): No longer "inherit" Python 2 packages
inheriting from a Python 3 package if the sole reason for inheriting was
adding python-setuptools respective python2-setuptools to [inputs],
[native-inputs] or [propagated-inputs]. Remove now needless [properties]
"python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
2016-11-15 22:28:59 +01:00
00e10c6e67
gnu: Remove python-setuptools and python2-setuptools from inputs (part 3)
...
This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.
* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
python-setuptools respective python2-setuptools from [inputs],
[native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
python2-oauthlib,
python2-seaborn,
python2-tornado,
python2-terminado,
python2-rauth,
python2-anyjson,
python2-amqp,
python2-kombu,
python2-billiard,
python2-celery,
python2-jellyfish,
python2-binaryornot,
python2-natsort,
python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
2016-11-15 22:28:38 +01:00
f3b98f4fec
gnu: Remove python-setuptools and python2-setuptools from inputs (part 2)
...
This patch contains the changes where removing setuptools from the inputs
affected some code-lines beside.
* gnu/packages/admin.scm (ansible): Remove all [inputs], [native-inputs] and
[propagated-inputs] where python-setuptools or python2-setuptools are the
sole entries. Remove python-setuptools and python2-setuptools listed on a
line by its own from [inputs], [native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (duplicity): Likewise.
* gnu/packages/bioinformatics.scm (bamm, python2-pybedtools,
python2-bx-python, python2-dendropy, python-pysam, python2-pysam, clipper,
crossmap, cutadapt, deeptools, grit, idr, python2-warpedlmm,
pbtranscript-tofu, seqmagick): Likewise.
* gnu/packages/docbook.scm (dblatex): Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg, python2-pyxdg): Likewise.
* gnu/packages/lirc.scm (python2-lirc): Likewise.
* gnu/packages/mp3.scm (eyed3): Likewise.
* gnu/packages/nutrition.scm (gourmet): Likewise.
* gnu/packages/openstack.scm (python-hacking, python2-hacking,
python-os-testr, python2-os-testr,
python-stevedore, python2-stevedore,
python-tempest-lib, python2-tempest-lib,
python-oslo.log, python2-oslo.log,
python-keystoneclient, python2-keystoneclient): Likewise.
* gnu/packages/password-utils.scm (assword): Likewise.
* gnu/packages/python.scm (python-passlib, python2-passlib,
python-babel, python2-babel,
python-parse-type,
python-pytest, python2-pytest,
python-scripttest, python2-scripttest,
python-testtools, python2-testtools,
python-testscenarios, python2-testscenarios,
python-subunit, python2-subunit,
python-pbr-0.11,
python-pbr, python2-pbr,
python-testrepository, python2-testrepository,
behave,
python-wheel, python2-wheel,
python-requests, python2-requests,
python-jsonschema, python2-jsonschema,
python-pyjwt, python2-pyjwt,
python-virtualenv, python2-virtualenv,
python-jinja2, python2-jinja2,
python-joblib, python2-joblib,
python-sphinx, python2-sphinx,
python-feedgenerator, python2-feedgenerator,
python-scikit-image, python2-scikit-image,
python-redis, python2-redis,
python2-fastlmm,
python-numpydoc, python2-numpydoc,
python-matplotlib, python2-matplotlib,
python2-pysnptools,
python-rpy2, python2-rpy2,
python-pillow, python2-pillow,
python-pycparser, python2-pycparser,
python-cffi, python2-cffi,
python-cairocffi, python2-cairocffi,
python-drmaa, python2-drmaa,
python-pathpy, python2-pathpy,
python-simplegeneric, python2-simplegeneric,
python-ipython, python2-ipython,
python-apsw, python2-apsw,
python-lxml, python2-lxml,
python-networkx, python2-networkx,
python-pyzmq, python2-pyzmq,
python-mccabe, python2-mccabe,
python-mccabe-0.2.1,
python-flake8, python2-flake8,
python-flake8-2.2.4,
python-mistune, python2-mistune,
python-ptyprocess, python2-ptyprocess,
python-llfuse, python2-llfuse,
python-webob, python2-webob,
python-xlrd, python2-xlrd,
python-tables, python2-tables,
python-pip, python2-pip,
python-libarchive-c, python2-libarchive-c,
python-docopt, python2-docopt,
python-pyrfc3339, python2-pyrfc3339,
python-configobj, python2-configobj,
python-clint, python2-clint,
python-rply, python2-rply,
python2-rpython,
python-widgetsnbextension, python2-widgetsnbextension
jupyter,
python-jupyter-console, python2-jupyter-console,
python-hy, python2-hy,
python-urllib3, python2-urllib3,
python-rsa, python2-rsa,
python-tox, python2-tox,
python2-hypothesis,
python-paste, python2-paste,
python-pastescript, python2-pastescript,
python2-unicodecsv,
python-pkgconfig, python2-pkgconfig,
python2-rope,
python-sqlparse, python2-sqlparse,
python-gevent, python2-gevent,
python-tabulate, python2-tabulate,
python-arrow, python2-arrow,
python-cleo, python2-cleo,
python-fake-factory, python2-fake-factory,
ptpython): Likewise.
* gnu/packages/rdf.scm (python-rdflib, python2-rdflib): Likewise.
* gnu/packages/terminals.scm (asciinema): Likewise.
* gnu/packages/version-control.scm (git-annex-remote-hubic): Likewise.
* gnu/packages/xdisorg.scm (arandr): Likewise.
2016-11-15 22:27:31 +01:00
5d85493284
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1b)
...
This patch contains the changes in all modules beside python.scm where
removing setuptools from the inputs could be achieved by removing complete
lines.
* gnu/packages/admin.scm (graphios, thefuck): Remove all [inputs],
[native-inputs] and [propagated-inputs] where python-setuptools or
python2-setuptools are the sole entries. Remove python-setuptools and
python2-setuptools listed on a line by its own from [inputs],
[native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (rdiff-backup): Likewise.
* gnu/packages/bioinformatics.scm (htseq, macs, python2-pbcore, rseqc,
multiqc): Likewise.
* gnu/packages/django.scm (python-django, python2-django,
python-django-simple-math-captcha, python2-django-simple-math-captcha):
Likewise.
* gnu/packages/docker.scm (python-docker-py, docker-compose): Likewise.
* gnu/packages/game-development.scm (python-pygame): Likewise.
* gnu/packages/key-mon.scm (key-mon): Likewise.
* gnu/packages/mail.scm (khard): Likewise.
* gnu/packages/music.scm (beets, python2-pyechonest): Likewise.
* gnu/packages/openstack.scm (python-bandit, python2-bandit,
python-debtcollector, python2-debtcollector,
python-mox3, python2-mox3,
python-os-client-config, python2-os-client-config,
python-oslo.config, python2-oslo.config,
python-oslo.context, python2-oslo.context,
python-oslo.i18n, python2-oslo.i18n,
python-oslo.serialization, python2-oslo.serialization,
python-oslosphinx, python2-oslosphinx,
python-oslotest, python2-oslotest,
python-oslo.utils, python2-oslo.utils,
python-swiftclient, python2-swiftclient): Likewise.
* gnu/packages/pdf.scm (pdfposter): Likewise.
* gnu/packages/tls.scm (python-acme, python2-acme): Likewise.
2016-11-15 21:58:44 +01:00
f54d6bacbf
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1a)
...
This patch contains the changes in python.scm where removing setuptools from
the inputs could be achieved by removing complete lines.
* gnu/packages/python.scm (python-psutil, python2-psutil,
python-py-bcrypt, python2-py-bcrypt,
python-paramiko, python2-paramiko,
python-httplib2, python2-httplib2,
python-ecdsa, python2-ecdsa,
python-ccm, python2-ccm,
python2-backport-ssl-match-hostname,
python-pycrypto, python2-pycrypto,
python-six, python2-six,
python-dateutil, python2-dateutil,
python2-mechanize,
python-extras, python2-extras,
python-mimeparse, python2-mimeparse,
python-nose, python2-nose,
python-nose2, python2-nose2,
python-unittest2, python2-unittest2,
python-py, python2-py,
python-testresources, python2-testresources,
python-fixtures-0.3.16,
python-fixtures, python2-fixtures,
python-coverage, python2-coverage,
python-discover, python2-discover,
python-exif-read, python2-exif-read,
python-pyld, python2-pyld,
python-certifi, python2-certifi,
python-click, python2-click,
python-vcversioner, python2-vcversioner,
python-unidecode, python2-unidecode,
python-pyyaml, python2-pyyaml,
python-markupsafe, python2-markupsafe,
python-pystache, python2-pystache,
python-docutils, python2-docutils,
python-pygments, python2-pygments,
python-sphinx-rtd-theme, python2-sphinx-rtd-theme,
python-blinker, python2-blinker,
python-rq, python2-rq,
python-numpy, python2-numpy,
python-distutils-extra, python2-distutils-extra,
python2-elib.intl,
python-pillow, python2-pillow,
python-xcffib, python2-xcffib,
python-decorator, python2-decorator,
python-gridmap, python2-gridmap,
python-pickleshare, python2-pickleshare,
python-isodate, python2-isodate,
python-html5lib, python2-html5lib,
python2-cssutils,
python-cssselect, python2-cssselect,
python-netifaces, python2-netifaces,
python-sympy, python2-sympy,
python-testlib, python2-testlib,
python2-xlib,
python-singledispatch, python2-singledispatch,
python-backports-abc, python2-backports-abc,
python-pep8, python2-pep8,
python-pyflakes, python2-pyflakes,
python-fonttools, python2-fonttools,
python-ly,
python-appdirs, python2-appdirs,
python-netaddr, python2-netaddr,
python-wrapt, python2-wrapt,
python-iso8601, python2-iso8601,
python-monotonic, python2-monotonic,
python-prettytable, python2-prettytable,
python-pyasn1-modules, python2-pyasn1-modules,
python-idna, python2-idna,
python-pretend, python2-pretend,
python-cryptography-vectors, python2-cryptography-vectors,
python-cryptography, python2-cryptography,
python-pyopenssl, python2-pyopenssl,
python-debian, python2-debian,
python-chardet, python2-chardet,
python-zope-event, python2-zope-event,
python-zope-i18nmessageid, python2-zope-i18nmessageid,
python-websocket-client, python2-websocket-client,
python-args, python2-args,
python-astor, python2-astor,
python2-functools32,
python2-futures,
python2-promise,
python-colorama, python2-colorama,
python-pluggy, python2-pluggy,
python-jmespath, python2-jmespath,
python-botocore, python2-botocore,
awscli,
python-pytest-subtesthack, python2-pytest-subtesthack,
python-pastedeploy, python2-pastedeploy,
python-magic, python2-magic,
python2-s3cmd,
python2-bz2file,
python-cysignals, python2-cysignals,
python-py3status,
python-tblib, python2-tblib,
python-greenlet, python2-greenlet,
python-twisted, python2-twisted,
python-kazoo, python2-kazoo,
python-pykafka, python2-pykafka,
python2-jsonrpclib,
python-chai, python2-chai,
python-inflection, python2-inflection,
python-pylev, python2-pylev,
python-lazy-object-proxy, python2-lazy-object-proxy,
python-dnspython, python2-dnspython,
python-email-validator, python2-email-validator,
python-ukpostcodeparser, python2-ukpostcodeparser,
python-pyaml, python2-pyaml,
python-flexmock, python2-flexmock,
python-orator, python2-orator,
python-bleach, python2-bleach,
python-ipywidgets, python2-ipywidgets,
python-nbconvert, python2-nbconvert,
python-nbformat, python2-nbformat,
python-axolotl-curve25519, python-axolotl2-curve25519,
python-axolotl, python2-axolotl,
python-nautilus, python-s3transfer): Remove python-setuptools and
python2-setuptools from [inputs], [native-inputs] or [propagated-inputs].
Remove [inputs], [native-inputs] and [propagated-inputs] where
python-setuptools or python2-setuptools were the sole entry.
2016-11-15 21:54:58 +01:00
e1b0b8f5b7
gnu: Fix name for ng0.
...
* gnu/packages/gnupg.scm: Change name in copyright header.
2016-11-15 14:36:58 -05:00
bb6e641588
gnu: Add httptunnel.
...
* gnu/packages/web.scm (httptunnel): New variable.
2016-11-15 20:27:14 +01:00
84590149e6
gnu: hisat: Fix typo.
...
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Fix directory
name in install phase.
2016-11-15 20:21:08 +01:00
49c2665f7b
gnu: Add pcb-rnd.
...
* gnu/packages/engineering.scm (pcb-rnd): New variable.
2016-11-15 20:21:03 +01:00
15e57f5762
gnu: python-2.7: Add all guix prefixes in PYTHONPATH to site-prefixes.
...
* gnu/packages/patches/python-2.7-site-prefixes.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add patch.
2016-11-15 17:37:48 +01:00
aaf75c890b
gnu: ensure pip and setuptools are installed even for Python 2.
...
* gnu/packages/python.scm (python-2.7): Add "--with-ensurepip=install" to
configure-flags.
* doc/guix.texi (Python Modules): Document it.
2016-11-15 17:37:40 +01:00
b02b9a520e
gnu: libmicrohttpd: Update to 0.9.52.
...
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.52.
[home-page]: Use https.
2016-11-15 15:25:15 +02:00
f5a077b10f
gnu: octave: Update to 4.2.0.
...
* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
2016-11-15 15:21:15 +02:00
fccab9931c
gnu: parallel: Update to 20161022.
...
* gnu/packages/parallel.scm (parallel): Update to 20161022.
[home-page]: Use https.
2016-11-15 11:45:53 +02:00
6312043ca5
gnu: libcdio: Update to 0.94.
...
* gnu/packages/cdrom.scm (libcdio): Update to 0.94.
[home-page]: Use https.
2016-11-15 11:13:24 +02:00
3ded2761ab
gnu: gvpe: Update to 3.0.
...
* gnu/packages/vpn.scm (gvpe): Update to 3.0.
2016-11-15 11:06:15 +02:00
336f830961
gnu: cryptsetup: Update to 1.7.3.
...
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.3.
2016-11-15 09:45:37 +02:00
538fe01934
gnu: python-vcversioner: Update to 2.16.0.0.
...
* gnu/packages/python.scm (python-vcversioner): Update to 2.16.0.0.
[inputs]: Remove python-setuptools.
[properties]: New field.
(python2-vcversioner): Use 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
2016-11-15 09:45:28 +02:00
1f781865fb
gnu: fish: Update to 2.4.0.
...
* gnu/packages/shells.scm (fish): Update to 2.4.0.
2016-11-15 01:17:01 +01:00
e25c904f2c
services: Require wpa-supplicant-service for connman-service.
...
* gnu/services/networking.scm (connman-shepherd-service): Add
wpa-supplicant among list of requirements.
2016-11-15 00:19:23 +01:00
2cccbc2af2
services: Add wpa-supplicant-service.
...
* gnu/services/networking.scm (wpa-supplicant-service): New procedure.
(wpa-supplicant-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.
2016-11-15 00:19:17 +01:00
028bf3c0b2
gnu: connman: Use localstatedir outside of store.
...
* gnu/packages/connman.scm (connman): Use localstatedir outside of store.
2016-11-15 00:13:29 +01:00
8bcd6b91ff
gnu: python-jsonschema: Use 'nosetests'.
...
* gnu/packages/python.scm (python-jsonschema)[arguments]: Replace 'check
phase with python nosetests.
[native-inputs]: Add python-nose.
[home-page]: Use https.
(python2-jsonschema)[native-inputs]: Add python2-mock.
2016-11-14 22:49:50 +02:00
571ffdebc3
gnu: accountsservice: Update to 0.6.43.
...
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.43.
2016-11-14 21:02:10 +02:00
a4cb821791
gnu: guix-devel: Update development snapshot.
...
* gnu/packages/package-management.scm (guix-devel): Update to commit
7ca37da855
2016-11-14 15:39:32 +01:00
198eac2bca
gnu: guix: Really skip all the container tests.
...
* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Update
pattern in 'disable-container-tests' to match 'test-equal'.
2016-11-14 15:39:32 +01:00
88eaed6174
gnu: libpsl: Update to 0.15.0.
...
* gnu/packages/web.scm (libpsl): Update to 0.15.0.
2016-11-14 14:12:50 +01:00
7ca37da855
gnu: libinput: Enable GUI event tool.
...
* gnu/packages/freedesktop.scm (libinput)[inputs]: Add glib.
[native-inputs]: Add cairo, gtk+-3.
(libinput-minimal)[native-inputs]: Only pkg-config.
2016-11-14 13:06:02 +02:00
73bb984ec4
gnu: freedesktop.scm: Reorder modules alphabetically.
...
* gnu/packages/freedesktop.scm: Reorder modules alphabetically.
2016-11-14 12:15:40 +02:00
8c5cdf5f20
gnu: libinput: Update to 1.5.1.
...
* gnu/packages/freedesktop.scm (libinput): Update to 1.5.1.
2016-11-14 12:12:26 +02:00
b231b057cd
gnu: wayland-protocols: Update to 1.7.
...
* gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.7.
2016-11-14 11:55:01 +02:00
e66f0dd232
gnu: mpv: Use lua@5.2.
...
* gnu/packages/video.scm (mpv)[inputs]: Change 'lua' to 'lua-5.2'.
2016-11-14 09:03:55 +00:00
d9721bcf27
gnu: readline-6.2: Fix CVE-2014-2524.
...
* gnu/packages/patches/readline-6.2-CVE-2014-2524.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline-6.2): Use it.
2016-11-13 17:01:01 -05:00
27d7c4e93a
gnu: signify: Update to 20.
...
* gnu/packages/crypto.scm (signify): Update to 20.
2016-11-13 17:01:01 -05:00
142530178d
gnu: mailutils: Update to 3.0.
...
* gnu/packages/mail.scm (mailutils): Update to 3.0.
[arguments]: Adjust 'pre-build' phase.
* gnu/packages/patches/m4-gets-undeclared.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2016-11-13 21:12:32 +01:00
d81850d438
gnu: guile-ncurses: Update to 2.1.
...
* gnu/packages/guile.scm (guile-ncurses): Update to 2.1.
[home-page]: Use https.
2016-11-13 22:02:05 +02:00
927d850512
gnu: btrfs-progs: Update to 4.8.3.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.3.
2016-11-13 13:34:00 +01:00
917239ff99
gnu: tidy: Use ‘modify-phases’.
...
* gnu/packages/web.scm (tidy)[arguments]: Use the ‘modify-phases’ syntax.
2016-11-13 13:34:00 +01:00
3b0ac79500
gnu: protobuf: Replace dead Google Code home-page.
...
* gnu/packages/protobuf.scm (protobuf)[home-page]: Update it.
2016-11-13 13:33:59 +01:00
3b0f2ba46b
gnu: exfat-utils: Update to 1.2.4.
...
* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.4.
[source, home-page]: Move away from dead Google Code project.
[arguments, native-inputs]: Remove.
2016-11-13 13:33:59 +01:00
c25a51d5c6
gnu: clisp: Use readline@6.2.
...
* gnu/packages/lisp.scm (clisp)[inputs]: Use readline-6.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-13 13:00:44 +01:00
2cab1dd58b
Merge branch 'core-updates'
2016-11-13 00:34:16 +01:00
15abcabe4e
gnu: Add newsbeuter.
...
* gnu/packages/syndication.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-12 20:50:48 +02:00
c76dab7b36
gnu: Add stfl.
...
* gnu/packages/ncurses.scm (stfl): New variable.
2016-11-12 20:50:47 +02:00
8883b30165
gnu: Add perl-modern-perl.
...
* gnu/packages/perl.scm (perl-modern-perl): New variable.
2016-11-12 18:26:28 +01:00
5c66314bd9
gnu: libtiff: Fix CVE-2016-9273.
...
* gnu/packages/patches/libtiff-CVE-2016-9273.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed): Use it.
2016-11-12 11:05:19 -05:00
0a7f17f0e0
gnu: Add python-flask-restplus.
...
* gnu/packages/python.scm (python-flask-restplus): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:17:40 +01:00
1e6112d89f
gnu: Add python-rednose.
...
* gnu/packages/python.scm (python-rednose): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:15:08 +01:00
e2fca4906e
gnu: Add python-termstyle.
...
* gnu/packages/python.scm (python-termstyle): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:10:23 +01:00
998f9ac56d
gnu: guix: Update development snapshot.
...
This is a followup to 166ba5b102166ba5b102
2016-11-12 14:49:04 +01:00
4a38422157
gnu: prosody: fix SSL/TLS.
...
* gnu/packages/lua.scm (lua5.1-sec-0.5): New variable.
* gnu/packages/messaging.scm (prosody):
[inputs]: Change lua5.1-sec to lua5.1-sec-0.5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 13:04:45 +01:00
8be62d3f20
gnu: ruby-lumberjack: Update to 1.0.10.
...
* gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.10.
[native-inputs]: Add 'ruby-timecop'.
2016-11-11 22:56:13 +10:00
e87dfdee86
gnu: ruby-arel: Update to 7.1.4.
...
* gnu/packages/ruby.scm (ruby-arel): Update to 7.1.4.
2016-11-11 22:48:22 +10:00
16d8d8b289
gnu: ruby-rake-compiler: Update to 1.0.1.
...
* gnu/packages/ruby.scm (ruby-rake-compiler): Update to 1.0.1.
2016-11-11 22:45:38 +10:00
81d0bd2f44
gnu: ruby-hoe: Update to 3.15.2.
...
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.15.2.
2016-11-11 22:44:03 +10:00
c59491183a
gnu: ruby-rspec-core: Update to 3.5.4.
...
* gnu/packages/ruby.scm (ruby-rspec-core): Update to 3.5.4.
2016-11-11 22:40:39 +10:00
bb4bcb02c2
gnu: bundler: Update to 1.13.6.
...
* gnu/packages/ruby.scm (bundler): Update to 1.13.6.
2016-11-11 22:38:13 +10:00
e2bb2e1780
gnu: ruby-yard: Update to 0.9.5-1.d816482a.
...
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.5-1.d816482a.
[source]: Update source URL.
[arguments]: Remove unneeded substitutions. Change test target.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch (New
file)
* gnu/local.mk (dist_patch_DATA): Add it.
2016-11-11 22:15:37 +10:00
7c45670b32
gnu: r-org-mm-eg-db: Update to 3.4.0.
...
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
0cfac6f270
gnu: r-org-dm-eg-db: Update to 3.4.0.
...
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
f04a3eff98
gnu: r-org-ce-eg-db: Update to 3.4.0.
...
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
83f9a6fb60
gnu: r-org-hs-eg-db: Update to 3.4.0.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.4.0.
2016-11-11 09:08:07 +01:00
071c223bfa
gnu: linux-libre@4.4: Update to 4.4.31.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.31.
2016-11-11 01:31:19 -05:00
86fc6fe777
gnu: linux-libre: Update to 4.8.7.
...
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.7.
2016-11-11 01:31:15 -05:00
472fc855bc
gnu: Add guile-aspell.
...
* gnu/packages/guile.scm (guile-aspell): New variable.
2016-11-11 00:23:16 +01:00
2c5ab05bff
gnu: wordnet: Build with gcc@6 to prevent chunked literal strings.
...
* gnu/packages/wordnet.scm (wordnet)[arguments]: Remove
-fno-builtin-strcpy.
[native-inputs]: New field.
2016-11-11 00:23:16 +01:00
aba5182c69
gnu: python-pillow: Update to 3.3.3 [fixes CVE-2016-{9189,9190}].
...
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.3.3.
2016-11-10 18:17:50 -05:00
b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode".
...
This phase is no longer needed as upstream has merged the fix in the
current release.
* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
2016-11-10 18:49:49 +01:00
3f62fa2b81
gnu: inkscape: Use modify-phases syntax.
...
* gnu/packages/inkscape.scm (inkscape)[arguments]: Use modify-phases
syntax.
2016-11-10 18:49:48 +01:00
65d2f396f7
gnu: vim: Update to 8.0.0073.
...
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0073.
2016-11-10 17:30:08 +00:00
5970e8e248
container: Pass a list of <file-system> objects as things to mount.
...
* gnu/build/linux-container.scm (mount-file-systems): 'mounts' is now a
list of <file-system> objects instead of a list of lists ("specs").
Add call to 'file-system->spec' as the argument to 'mount-file-system'.
(run-container, call-with-container): Adjust docstring accordingly.
* gnu/system/file-systems.scm (spec->file-system): New procedure.
* gnu/system/linux-container.scm (container-script)[script]: Call
'spec->file-system' inside gexp.
* guix/scripts/environment.scm (launch-environment/container): Remove
call to 'file-system->spec'.
* tests/containers.scm ("call-with-container, mnt namespace")
("call-with-container, mnt namespace, wrong bind mount"): Pass a list of
<file-system> objects.
2016-11-10 18:01:44 +01:00
5e7eaccb14
linux-container: Use 'source-module-closure' when generating the script.
...
* gnu/system/linux-container.scm (container-script)[script]: Use
'source-module-closure' in 'with-imported-modules' form.
2016-11-10 18:01:44 +01:00
9e4e431e04
gnu: guix: Update development snapshot.
...
* gnu/packages/package-management.scm (guix-devel): Update to commit
324a2ba56c
2016-11-10 18:01:44 +01:00
1c79e0861a
gnu: gmsh: Update to 2.14.1
...
* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-10 18:57:57 +02:00
1b35fea19f
gnu: milkytracker: Update upstream location.
...
* gnu/packages/music.scm (milkytracker)[source]: Update source uri.
[home-page]: Change to new domain.
Reported-by: ng0 <ng0@we.make.ritual.n0.is>
2016-11-10 16:33:57 +00:00
8f9c89d13b
gnu: imagemagick: Update to 6.9.6-4.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-4.
2016-11-10 11:33:20 -05:00
f34284abcb
gnu: claws-mail: Update to 3.14.1.
...
* gnu/packages/mail.scm (claws-mail): Update to 3.14.1.
2016-11-10 14:30:09 +01:00
99abcdbd9b
gnu: Add pdfposter.
...
* gnu/packages/pdf.scm(pdfposter): New variable.
2016-11-10 14:26:04 +01:00
c68e8591d8
gnu: Add python2-pypdf.
...
* gnu/packages/pdf.scm (python2-pypdf): New variable.
2016-11-10 14:26:04 +01:00
ad5a7d49c3
gnu: Add python-pypdf2.
...
* gnu/packages/pdf.scm (python-pypdf2, python2-pypdf2): New variables.
2016-11-10 14:26:04 +01:00
8033772363
gnu: gcc@5, gcc@6: Work around use of 'movabs' for /gnu/store strings.
...
Partly addresses <http://bugs.gnu.org/24703 >.
Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/patches/gcc-strmov-store-file-names.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-5)[sources](patches): Add it.
(gcc-6)[sources](patches): Add it.
2016-11-09 21:24:44 +01:00
8bb115e0c6
gnu: Add kdevelop-pg-qt.
...
* gnu/packages/kde.scm (kdevelop-pg-qt): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-09 21:24:44 +01:00
5a16e1c04e
gnu: Add libkomparediff2.
...
* gnu/packages/kde.scm (libkomparediff2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-09 21:24:44 +01:00
28791c1c8d
gnu: hidapi: Fix 'license'.
...
* gnu/packages/libusb.scm (hidapi)[license]: Actually call
'non-copyleft'.
2016-11-09 21:24:44 +01:00
65dccb3a86
gnu: Add vifm.
...
* gnu/packages/vim.scm (vifm): New variable.
2016-11-09 20:56:36 +02:00
0b34b58688
gnu: libxslt: Fix CVE-2016-4738.
...
* gnu/packages/patches/libxslt-CVE-2016-4738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
2016-11-09 10:19:49 -05:00
d887f420d2
gnu: postgresql: Update to 9.5.5.
...
* gnu/packages/databases.scm (postgresql): Update to 9.5.5.
[home-page]: Use https.
2016-11-09 11:39:30 +02:00
bc332a638b
gnu: mariadb: Update to 10.1.19.
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.19.
2016-11-09 11:04:36 +02:00
de7da4e5d1
gnu: gnome-calculator: Update to 3.22.2.
...
* gnu/packages/gnome.scm (gnome-calculator): Update to 3.22.2.
2016-11-09 09:25:18 +01:00
7894ea6122
gnu: gcc-arm-none-eabi-4.9: Remove non-applicable patch.
...
* gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9)[patches]: Remove
"gcc-arm-bug-71399.patch" from XGCC's patches.
2016-11-08 23:57:29 +01:00
946465bbaf
system: Reintroduce 'GUIX_LOCPATH', for compatibility with glibc@2.23.
...
* gnu/system.scm (operating-system-environment-variables): Re-add
'GUIX_LOCPATH'. This reverts part of
9f58fe3d1c
2016-11-08 23:31:27 +01:00
e3ec6c806a
gnu: mate-themes: Update to 3.20.9.
...
* gnu/packages/mate.scm (mate-themes): Update to 3.20.9.
[source]: Update package location.
[inputs]: Remove gtk+-2, add gtk+-3.
[description]: Add note about dual gtk+-2/gtk+-3 support.
2016-11-08 22:53:43 +02:00
27caff1b5d
gnu: mate-menus: Update to 1.16.0.
...
* gnu/packages/mate.scm (mate-menus): Update to 1.16.0.
[propagated-inputs]: Move glib ...
[inputs]: ... to here.
2016-11-08 22:35:27 +02:00
859e367d07
gnu: Add pam-krb5 service.
...
* doc/guix.texi (Kerberos Services): New node.
* gnu/services/kerberos.scm: New file.
* gnu/local.mk: Add it.
2016-11-08 21:35:26 +01:00
9927943c30
gnu: mate-desktop: Update to 1.16.1.
...
* gnu/packages/mate.scm (mate-desktop): Update to 1.16.1.
[arguments]: Build with gtk+-3, enable mpaste.
[propagated-inputs]: Remove gtk+-2, move libxrandr,
startup-notification ...
[inputs]: ... to here. Add gtk+-3, python-2.
2016-11-08 22:18:07 +02:00
b6c5ad8564
gnu: mate-icon-theme: Update to 1.16.0.
...
* gnu/packages/mate.scm (mate-icon-theme): Update to 1.16.0.
2016-11-08 22:16:54 +02:00
065999807d
gnu: libmateweather: Update to 1.16.1.
...
* gnu/packages/mate.scm (libmateweather): Update to 1.16.1.
[arguments]: Build with gtk+-3.
[propagated-inputs]: Remove gtk+-2, move gdk-pixbuf ...
[inputs]: ... to here. Add gtk+-3.
2016-11-08 22:16:18 +02:00
8ae6040451
gnu: Add faust-2.
...
* gnu/packages/audio.scm (faust-2): New variable.
2016-11-08 21:00:02 +01:00
83c49858b5
gnu: Add LLVM variant with RTTI support.
...
* gnu/packages/llvm.scm (llvm-with-rtti): New variable.
2016-11-08 20:59:58 +01:00
f0ad50af8c
gnu: python-tempest-lib: Update to 1.0.0.
...
* gnu/packages/openstack.scm (python-tempest-lib): Update to 1.0.0.
[home-page]: Use HTTPS.
2016-11-08 18:22:48 +00:00
43b53bbbf5
gnu: python-os-testr: Update to 0.8.0.
...
* gnu/packages/openstack.scm (python-os-testr, python2-os-testr): Update
to 0.8.0.
[home-page]: Use HTTPS.
2016-11-08 18:22:18 +00:00
eaba9d6670
gnu: python-jsonschema: Correct inputs.
...
* gnu/packages/python.scm (python-jsonschema)[inputs]: Remove
python-setuptools. Move python-vcversioner to ...
[native-inputs]: ... here.
* gnu/packages/python.scm (python2-jsonschema)[inputs]: Move
python2-functools32 to ...
[propagated-inputs]: ... here.
[native-inputs]: Add python2-setuptools.
2016-11-08 18:22:07 +00:00
c163a28473
gnu: libgit2: Update to 0.24.3 [fixes CVE-2016-{8568,8569}].
...
* gnu/packages/version-control.scm (libgit2): Update to 0.24.3.
2016-11-08 12:48:26 -05:00
912dcbad86
gnu: python-cryptography, python-cryptography-vectors: Update to 1.5.3.
...
* gnu/packages/python.scm (python-cryptography, python2-cryptography):
Update to 1.5.3.
[native-inputs]: Add python-pytz. Change python-pytest to python-pytest-2.9.2.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.5.3.
2016-11-08 16:14:15 +00:00
fca4ff3559
gnu: Add python-pytest-2.9.2.
...
* gnu/packages/python.scm (python-pytest-2.9.2): New variable.
2016-11-08 16:14:04 +00:00
667e777b4e
gnu: mupdf: Fix CVE-2016-{7504,7505,7506,7563,7564,9017,9136} in bundled mujs.
...
* gnu/packages/patches/mupdf-CVE-2016-7504.patch,
gnu/packages/patches/mupdf-CVE-2016-7505.patch
gnu/packages/patches/mupdf-CVE-2016-7506.patch
gnu/packages/patches/mupdf-CVE-2016-7563.patch
gnu/packages/patches/mupdf-CVE-2016-7564.patch
gnu/packages/patches/mupdf-CVE-2016-9017.patch
gnu/packages/patches/mupdf-CVE-2016-9136.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
2016-11-08 11:03:14 -05:00
81bf2ccbc4
system: Use grub from bootloader configuration.
...
* gnu/system/grub.scm (gnu): Export grub-configuration-grub.
* guix/scripts/system.scm (perform-action): Use it.
(define-module): Don't import (gnu packages grub).
Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
2016-11-08 14:35:05 +00:00
72246dc029
gnu: gcc@4.7: Build with texinfo@5.
...
* gnu/packages/gcc.scm (gcc@4.7)[native-inputs]: Use texinfo@5 in place
of texinfo@6.
2016-11-08 16:24:29 +02:00
842a1400a7
gnu: Add plantuml.
...
* gnu/packages/uml.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Roel Janssen <roel@gnu.org>
2016-11-08 14:59:04 +01:00
5045d80ff1
gnu: gnupg: Add TODO comment about custom build phase.
...
* gnu/packages/gnupg.scm (gnupg)[arguments]: Add comment.
2016-11-08 04:07:23 -05:00
a00fbe8adf
gnu: keepassx: Update to 2.0.3.
...
* gnu/packages/password-utils.scm (keepassx): Update to 2.0.3.
[inputs]: Add libxi.
2016-11-07 21:57:00 +02:00
2523691a22
gnu: owncloud-client: Update to 2.2.4.
...
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.4.
[arguments]: Enable tests, disable two failing tests.
[inputs]: Remove python-wrapper, qt, ruby. Add qtbase, qtwebkit.
Move perl ...
[native-inputs]: ... to here. Add cmocka and qttools.
2016-11-07 21:56:47 +02:00
6a686b18e0
gnu: python-sqlalchemy-utils: Mention optional dependencies in description.
...
* gnu/packages/python.scm (python-sqlalchemy-utils,
python2-sqlalchemy-utils)[description]: Mention optional dependencies.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-07 12:49:03 -05:00
1581406e23
gnu: Add efibootmgr.
...
* gnu/packages/linux.scm (efibootmgr): New variable.
2016-11-07 12:12:59 +00:00
0d74462a5f
gnu: Add efivar.
...
* gnu/packages/linux.scm (efivar): New variable.
2016-11-07 12:12:56 +00:00
06028aed7c
gnu: ruby-tzinfo-data: Update to 1.2016.9.
...
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2016.9.
2016-11-07 21:36:24 +10:00
17ba688c49
gnu: ruby-sqlite3: Update to 1.3.12.
...
* gnu/packages/ruby.scm (ruby-sqlite3): Update to 1.3.12.
2016-11-07 21:35:31 +10:00
e7d1d472cd
gnu: ruby-shoulda-context: Update to 1.2.2.
...
* gnu/packages/ruby.scm (ruby-shoulda-context): Update to 1.2.2.
2016-11-07 21:35:07 +10:00
ca0839142e
gnu: ruby-domain-name: Update to 0.5.20161021.
...
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20161021.
2016-11-07 21:34:15 +10:00
2a2eb07d87
gnu: ruby-http-cookie: Update to 1.0.3.
...
* gnu/packages/ruby.scm (ruby-http-cookie): Update to 1.0.3.
2016-11-07 21:33:41 +10:00
420fdfef9a
gnu: ruby-sequel: Update to 4.40.0.
...
* gnu/packages/ruby.scm (ruby-sequel): Update to 4.40.0.
2016-11-07 21:32:32 +10:00
3cf7c31720
gnu: diamond: Update to 0.8.26.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.26.
2016-11-07 21:31:09 +10:00
bd9174860c
gnu: texmaker: Use modular qt and qtwebkit.
...
* gnu/packages/tex.scm (texmaker)[inputs]: Use modular qt and qtwebkit.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-07 10:18:22 +01:00
47e1d280d5
gnu: Add qtwebkit.
...
* gnu/packages/qt.scm (qtwebkit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-07 10:18:22 +01:00
fbc44ef2cd
gnu: nano: Update to 2.7.1.
...
* gnu/packages/nano.scm (nano): Update to 2.7.1.
[home-page]: Use https.
2016-11-07 07:55:01 +02:00
71e21fb26d
Merge branch 'master' into core-updates
2016-11-07 00:33:16 -05:00
14ac8e4865
gnu: jansson: Update to 2.9.
...
* gnu/packages/web.scm (jansson): Update to 2.9.
[source]: Remove 'jansson-CVE-2016-4425.patch'.
* gnu/packages/patches/jansson-CVE-2016-4425.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-06 19:50:30 -05:00
19ac2ba858
gnu: glibc: Add version 2.23.
...
* gnu/packages/base.scm (glibc-2.23): New variable.
2016-11-07 00:44:56 +01:00
fd68cc2c8b
gnu: ghostscript: Add 'upstream-name' property.
...
This allows 'guix refresh' to do the right thing.
* gnu/packages/ghostscript.scm (ghostscript)[properties]: New field.
2016-11-06 23:52:32 +01:00
2ad0240c56
gnu: acme-client: Update to 0.1.14.
...
* gnu/packages/tls.scm (acme-client): Update to 0.1.14.
2016-11-06 15:58:22 -05:00
a95403876e
gnu: vim: Update to 8.0.0069.
...
* gnu/packages/vim.scm (vim): Update to 8.0.0069.
2016-11-06 20:44:43 +00:00
63d8f08fbf
gnu: qtmultimedia: Remove bundled library.
...
* gnu/packages/qt.scm (qtmultimedia)[source]: Remove bundled library.
2016-11-06 22:25:11 +02:00
c04854da93
gnu: qtimageformats: Remove bundled libraries.
...
* gnu/packages/qt.scm (qtimagesformats)[source]: Remove bundled 3rd
party libraries.
2016-11-06 22:25:11 +02:00
26d07efb79
gnu: python-sqlalchemy-utils: Use python-pytest.
...
* gnu/packages/python.scm (python-sqlalchemy-utils)[native-inputs]: Add
python-pytest.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:15 +00:00
c22b4f87c2
gnu: python-sqlalchemy-utils: Propagate existing inputs.
...
* gnu/packages/python.scm (python-sqlalchemy-utils)[inputs]: Move to ...
[propagated-inputs]: ... here.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:14 +00:00
462bf27157
gnu: Add python-flask-babel.
...
* gnu/packages/python.scm (python-flask-babel, python2-flask-babel):
New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:14 +00:00
9dede065ba
gnu: Add python-furl.
...
* gnu/packages/python.scm (python-furl, python2-furl): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:14 +00:00
b91912c42a
gnu: Add python-orderedmultidict.
...
* gnu/packages/python.scm (python-orderedmultidict, python2-orderedmultidict):
New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:13 +00:00
4a0933307e
gnu: Add python-pycodestyle.
...
* gnu/packages/python.scm (python-pycodestyle, python2-pycodestyle):
New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:13 +00:00
290ad2243c
gnu: Remove comment which is factually incorrect.
...
* gnu/system/pam.scm: Remove incorrect comment.
2016-11-06 19:56:43 +01:00
1e17a2d5f2
install: Extract procedure: install-grub-config.
...
* gnu/build/install.scm (install-grub-config): New procedure.
(install-grub): Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-06 18:08:53 +01:00
3382bfe9ea
system: Avoid using device paths in <menu-entry> device field.
...
This fixes a regression introduced by
1ef8b72a7f
2016-11-06 18:08:46 +01:00
f4dc22bcd9
gnu: nmap: Update to 7.31.
...
* gnu/packages/admin.scm (nmap): Update to 7.31.
[arguments]: Add phase 'patch-Makefile' to prevent lua from being built.
2016-11-06 16:17:29 +00:00
331ef882ff
gnu: wireshark: Use lua-5.2.
...
* gnu/packages/networking.scm (wireshark)[inputs]: Change from 'lua' to
'lua-5.2'.
2016-11-06 16:17:27 +00:00
6dbf1fec0d
gnu: lua: Update to 5.3.3.
...
* gnu/packages/patches/lua52-liblua-so.patch: Rename to ...
* gnu/packages/patches/lua-liblua-so.patch: ... this. Add version comment.
* gnu/local.mk (dist_patch_DATA): Adjust patch name.
* gnu/packages/lua.scm (lua): Update to 5.3.3.
[source]: Use https URL. Use new patch name.
[home-page]: Use https URL.
(lua-5.2): New variable.
(lua-5.1)[source]: Use https URL.
2016-11-06 16:17:16 +00:00
de975de39b
gnu: build: file-system: Change url of LUKS specification.
...
* gnu/build/file-system.scm: Change url of LUKS specification.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06 14:35:36 +02:00
f0badf98d7
gnu: pingus: Update upstream location.
...
* gnu/packages/games.scm (pingus)[source]: Update source uri.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06 14:35:33 +02:00
73ea83f517
gnu: r-proto: Update project's home-page.
...
* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06 14:35:21 +02:00
fab959d308
gnu: java-hamcrest-core: Fix build.
...
Since we now remove the directory "lib" from the source, we need to
create a directory where build.xml searches for .jar-files.
* gnu/packages/java.scm (java-hamcrest-core)[pahases]: New phase
create-dummy-directories.
2016-11-06 11:49:12 +01:00
e5213cd63b
gnu: java-hamcrest-core: Remove wrong source file-name.
...
The sources file-name was set to "java-hamcrest-core", while it contains
not only the "core" but all of hamcrest. Further the source archive
already has the correct name.
* gnu/packages/java.scm (java-hamcrest-core)[source]: Remove file-name.
2016-11-06 10:55:08 +01:00
006728966a
gnu: java-hamcrest-core: Update upstream location.
...
The checksum changed since the new location's archive contains no
jar-files (except those of external libraries) and line endings are
different.
* gnu/packages/java.scm (java-hamcrest-core)[source]: Update source
uri and checksum. [snippet]: Remove directory "lib" completely.
2016-11-06 10:42:57 +01:00
937bc2d137
gnu: bullet: Update to 2.85.1.
...
* gnu/packages/game-development.scm (bullet): Update to 2.85.1.
[source]: Change to new Github url.
[arguments]: Enable tests, build shared libraries.
[inputs]: Add glu, libx11, mesa.
2016-11-06 10:30:18 +02:00
8b6ad165d1
Merge branch 'master' into core-updates
2016-11-06 03:29:06 -05:00
7f4658983a
gnu: epiphany: Update to 3.22.1.
...
* gnu/packages/gnome.scm (epiphany): Update to 3.22.1.
2016-11-06 02:55:52 -05:00
569fc290b3
gnu: ibus: Update to 1.5.14.
...
* gnu/packages/ibus.scm (ibus): Update to 1.5.14.
[arguments]: Disable emojis.
[inputs]: Add json-glib.
[home-page]: Use project's new home-page.
2016-11-05 23:23:37 +02:00
7acc2a3eb3
gnu: libkate: Update upstream location.
...
* gnu/packages/xiph.scm (libkate)[source]: Update source uri.
[home-page]: Update project's home-page.
2016-11-05 23:23:36 +02:00
2c62b31619
gnu: w3m: Fix the commit string.
...
* gnu/packages/w3m.scm (w3m)[source]: Fix the commit string.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-05 17:12:24 -04:00
683cdbf51b
gnu: python-axolotl-curve25519: Fix license.
...
* gnu/packages/python.scm (python-axolotl-curve25519,
python2-axolotl-curve25519)[license]: Replace ISC with BSD-3.
2016-11-05 16:34:14 -04:00
06ff083754
gnu: Add python-axolotl.
...
* gnu/packages/python.scm (python-axolotl, python2-axolotl): New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-05 16:32:19 -04:00
2f6dd9cdef
gnu: Add python-axolotl-curve25519.
...
* gnu/packages/python.scm (python-axolotl-curve25519,
python2-axolotl-curve25519): New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-05 16:32:15 -04:00
9422c98a0a
gnu: python-imagesize: Disable the test suite.
...
* gnu/packages/python.scm (python-imagesize, python2-imagesize)[arguments]:
Disable the tests.
2016-11-05 14:13:39 -04:00
2d125a9b21
gnu: weex: Update to 2.8.2 [fixes CVE-2005-3150].
...
* gnu/packages/ftp.scm (weex): Update to 2.8.2.
[source]: Use new URL. Remove obsolete 'weex-vacopy.patch'.
[arguments]: Remove custom 'configure' phase and add 'bootstrap' phase.
[native-inputs]: Add autoconf, automake, and gnu-gettext.
* gnu/packages/patches/weex-vacopy.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-05 13:31:44 -04:00
268b3802e9
gnu: whois: Update to 5.2.13.
...
* gnu/packages/networking.scm (whois): Update to 5.2.13.
2016-11-05 17:46:55 +02:00
0cee33ac96
gnu: gst-plugins-bad: Update to 1.10.0.
...
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.0.
[inputs]: Remove wayland.
[tests]: Update comment about failing tests.
[home-page]: Use https.
2016-11-05 17:41:39 +02:00
18a9a7ef38
gnu: jasper: Update to 1.900.19.
...
* gnu/packages/image.scm (jasper): Update to 1.900.19.
[arguments]: Remove custom make-flags.
2016-11-05 17:41:38 +02:00
378a0535e1
gnu: freeipmi: Update to 1.5.5.
...
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.5.
2016-11-05 17:41:38 +02:00
96451462c5
gnu: python-gst: Update to 1.10.0.
...
* gnu/packages/gstreamer.scm (python-gst): Update to 1.10.0.
2016-11-05 17:41:38 +02:00
81fc4b20c7
gnu: gst-libav: Update to 1.10.0.
...
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
7aa083e581
gnu: gst-plugins-ugly: Update to 1.10.0.
...
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
49eddefbf0
gnu: gst-plugins-good: Update to 1.10.0.
...
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
74e6c84444
gnu: gst-plugins-base: Update to 1.10.0.
...
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
e2a2eeecce
gnu: gstreamer: Update to 1.10.0.
...
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.0.
2016-11-05 17:41:36 +02:00
05234973c7
gnu: Add mps-youtube.
...
* gnu/packages/video.scm (mps-youtube): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-05 12:27:12 +00:00
02f8f804f0
gnu: Add python-pafy.
...
* gnu/packages/python.scm (python-pafy): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-05 12:27:12 +00:00
c2f4cab9a0
gnu: libidn: Distinguish from libidn2.
...
* gnu/packages/libidn.scm (libidn)[description]: Add detail to help distinguish
from libidn2.
2016-11-05 01:12:35 -04:00
250a8abc66
gnu: Add libidn2.
...
* gnu/packages/libidn.scm (libidn2): New variable.
2016-11-05 01:12:31 -04:00
674a0f9558
gnu: w3m: Switch to Debian's actively maintained fork of w3m.
...
Fixes some security issues seen here:
<http://www.openwall.com/lists/oss-security/2016/11/03/3 >
* gnu/packages/w3m.scm (w3m): Switch it.
[source]: Use Debian's git tree. Remove obsolete patches.
[arguments]: Remove an unneeded substitute* function.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch,
gnu/packages/patches/w3m-disable-weak-ciphers.patch,
gnu/packages/patches/w3m-force-ssl_verify_server-on.patch,
gnu/packages/patches/w3m-libgc.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-04 20:06:03 -04:00
682bfb8124
gnu: webkitgtk: Update to 2.14.2.
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.1.
2016-11-04 19:49:11 -04:00
c27ae827da
gnu: Add jupyter.
...
* gnu/packages/python.scm (jupyter): New variable.
2016-11-04 21:23:08 +01:00
accd5f996e
gnu: python-ipython: Update to 4.0.0.
...
* gnu/packages/python.scm (python-ipython): Update to 4.0.0.
[inputs]: Keep only "readline" and "which"; move the remaining inputs
to propagated-inputs, except for "python-requests" and "python-nose"
which are moved to native-inputs.
[propagated-inputs]: Add "python-pexpect", "python-pickleshare",
"python-simplegeneric", "python-traitlets", "python-ipykernel".
[native-inputs]: Add "python-testpath".
[arguments]: Enable building of HTML documentation.
[source]: Remove patch.
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: Remove
patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-04 21:23:07 +01:00
8ceebf8fa6
gnu: Add python-jupyter-console.
...
* gnu/packages/python.scm (python-jupyter-console,
python2-jupyter-console): New variable.
2016-11-04 21:23:07 +01:00
4fe2e34409
gnu: Add python-ipywidgets.
...
* gnu/packages/python.scm (python-ipywidgets, python2-ipywidgets): New
variables.
2016-11-04 21:23:06 +01:00
d55724ed5b
gnu: Add python-widgetsnbextension.
...
* gnu/packages/python.scm (python-widgetsnbextension,
python2-widgetsnbextension): New variables.
2016-11-04 21:23:06 +01:00
a0d62280f5
gnu: Add python-notebook.
...
* gnu/packages/python.scm (python-notebook, python2-notebook): New
variables.
2016-11-04 21:23:05 +01:00
c60898a845
gnu: Add python-nbconvert.
...
* gnu/packages/python.scm (python-nbconvert, python2-nbconvert): New
variables.
2016-11-04 21:23:05 +01:00
60590a3ae8
gnu: Add python-entrypoints.
...
* gnu/packages/python.scm (python-entrypoints, python2-entrypoints): New
variables.
2016-11-04 21:23:04 +01:00
08722837b0
gnu: chromium-bsu: Update to 0.9.16.1.
...
* gnu/packages/games.scm (chromium-bsu): Update to 0.9.16.1.
[arguments]: Remove 'set-sdl-paths phase.
[inputs]: Add gnu-gettext.
2016-11-04 11:17:09 -04:00
bd2e1a8cb0
gnu: cross-base: Remove exports of cross compilers.
...
They were never really needed and caused troubles in the presence of
circular module dependencies as reported by
Danny Milosavljevic <dannym@scratchpost.org> at
<https://lists.gnu.org/archive/html/guix-devel/2016-11/msg00144.html >.
* gnu/packages/cross-base.scm (xgcc-mips64el, xgcc-xtensa, xgcc-armhf):
Remove.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Use
'cross-gcc' instead of XGCC-XTENSA.
2016-11-04 15:36:00 +01:00
fb77c61422
gnu: Remove '%final-inputs' references at the top level.
...
Due to circular dependencies, referring to bindings exported by other
modules from the top level is frowned upon. This patch addresses one of
the remaining cases.
* gnu/packages/base.scm (%final-inputs): New procedure.
* gnu/packages/cross-base.scm: Remove (gnu packages commencement) import.
(cross-gcc): Use the new '%final-inputs'.
* gnu/packages/make-bootstrap.scm: Remove (gnu packages commencement) import.
(package-with-relocatable-glibc): Use the new '%final-inputs'.
2016-11-04 15:36:00 +01:00
8af47ef603
gnu: r-nmf: Use bigmemory.
...
* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.
2016-11-04 14:53:24 +01:00
59523c4cf5
gnu: Add r-bigmemory.
...
* gnu/packages/statistics.scm (r-bigmemory): New variable.
2016-11-04 14:46:47 +01:00
4a83865286
gnu: Add r-synchronicity.
...
* gnu/packages/statistics.scm (r-synchronicity): New variable.
2016-11-04 14:40:13 +01:00
c6105d69c0
gnu: Add r-bigmemory-sri.
...
gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
2016-11-04 14:35:04 +01:00
1a79d4767a
gnu: xmp: Update to 4.1.0.
...
* gnu/packages/audio.scm (xmp): Update to 4.1.0.
2016-11-04 21:08:44 +08:00
2784fca032
gnu: libxmp: Update to 4.4.1.
...
* gnu/packages/audio.scm (libxmp): Update to 4.4.1.
2016-11-04 21:08:44 +08:00
18f3d92b39
gnu: Add swh-plugins-lv2.
...
* gnu/packages/audio.scm (swh-plugins-lv2): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-11-04 12:11:06 +01:00
55436048d8
gnu: Add python-bleach.
...
* gnu/packages/python.scm (python-bleach, python2-bleach): New
variables.
2016-11-04 11:32:35 +01:00
2d321bb2c5
gnu: Add python-nbformat.
...
* gnu/packages/python.scm (python-nbformat, python2-nbformat): New
variables.
2016-11-04 11:29:16 +01:00
8ee62c97f6
gnu: Add python-html5lib-0.9.
...
* gnu/packages/python.scm (python-html5lib-0.9, python2-html5lib-0.9):
New variables.
2016-11-04 11:26:34 +01:00
5ff6effcc0
gnu: Add python-testpath.
...
* gnu/packages/python.scm (python-testpath, python2-testpath): New
variables.
2016-11-04 11:24:02 +01:00
ab526102ed
gnu: Add python-ipykernel.
...
* gnu/packages/python.scm (python-ipykernel, python2-ipykernel): New
variables.
2016-11-04 11:23:19 +01:00
9ff01f2d01
gnu: Add python-jupyter-client.
...
* gnu/packages/python.scm (python-jupyter-client,
python2-jupyter-client): New variables.
2016-11-04 11:22:54 +01:00
4263b06fa2
gnu: Add python-jupyter-core.
...
* gnu/packages/python.scm (python-jupyter-core, python2-jupyter-core):
New variables.
2016-11-04 11:21:37 +01:00
a5ba14811a
gnu: python-traitlets: Update to 4.2.0.
...
* gnu/packages/python.scm (python-traitlets): Update to 4.2.0.
2016-11-04 11:19:22 +01:00
8d806cb0e0
gnu: ola: Fix build failure caused by use of deprecated function.
...
* gnu/packages/patches/ola-readdir-r.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lighting.scm (ola)[source]: Use it.
2016-11-04 01:44:42 -04:00
6e1d7aa94e
gnu: Add font-adobe-source-code-pro.
...
* gnu/packages/fonts.scm (font-adobe-source-code-pro): New variable.
2016-11-03 20:32:04 +00:00
b4edcd28cf
gnu: Add geteltorito.
...
* gnu/packages/cdrom.scm (geteltorito): New variable.
2016-11-03 20:31:36 +00:00
ccbc575824
gnu: maxima: Update to 5.38.1.
...
* gnu/packages/maths.scm (maxima): Update to 5.38.1.
2016-11-03 16:14:05 -04:00
043f1535c2
gnu: starfighter: Update to 1.6.
...
* gnu/packages/games.scm (starfighter): Update to 1.6.
2016-11-03 15:40:17 -04:00
ed8fbe5e62
gnu: r-rcas: Update to 1.0.0.
...
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.0.0.
2016-11-03 19:01:46 +01:00
16a8bd3194
gnu: r-rtracklayer: Update to 1.34.1.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.1.
2016-11-03 19:01:46 +01:00
c15ae9b008
gnu: r-biocparallel: Update to 1.8.1.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.1.
2016-11-03 19:01:46 +01:00
5b3b2d2f02
gnu: r-limma: Update to 3.30.2.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.2.
2016-11-03 19:01:46 +01:00
ed3054231d
gnu: r-edger: Update to 3.16.1.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.1.
2016-11-03 19:01:45 +01:00
e71659162b
gnu: r-hmisc: Update to 4.0.0.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.
2016-11-03 19:01:45 +01:00
f158b92caf
gnu: r-r-oo: Update to 1.21.0.
...
* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
2016-11-03 19:01:45 +01:00
f890981690
gnu: r-openssl: Update to 0.9.5.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
2016-11-03 19:01:45 +01:00
fbe5161c7d
gnu: r-checkmate: Update to 1.8.2.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
2016-11-03 19:01:45 +01:00
572e1a0ca7
gnu: r-acepack: Update to 1.4.1.
...
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
2016-11-03 19:01:44 +01:00
054a9a786b
gnu: r-gdtools: Update to 0.1.1.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.
2016-11-03 19:01:44 +01:00
d13a4e2575
gnu: r-proto: Update to 1.0.0.
...
* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
2016-11-03 19:01:44 +01:00
ebbd4d0bfd
gnu: Add r-survival.
...
* gnu/packages/statistics.scm (r-survival): New variable.
2016-11-03 19:01:44 +01:00
ac3265abad
gnu: Add r-htmltable.
...
* gnu/packages/web.scm (r-htmltable): New variable.
2016-11-03 19:01:44 +01:00
b81245ccb3
[PATCH] gnu: Add libjxr.
...
* gnu/packages/image.scm (libjxr): New variable.
* gnu/packages/patches/libjxr-fix-function-signature.patch: New file.
* gnu/packages/patches/libjxr-fix-typos.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.
2016-11-03 13:43:23 -04:00
b054b26a48
gnu: sunxi-tools: Update to 1.4.1.
...
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.1.
[arguments]: Add "CC=gcc" "all" to #:make-flags. Remove 'fix-Makefile'
phase. Add 'install' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-03 15:58:04 +01:00
5d68e9d620
gnu: Add pdf2svg.
...
* gnu/packages/pdf.scm (pdf2svg): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-03 14:33:50 +01:00
4c93fe83e8
gnu: mesa: Apply MIPS patch conditionally.
...
Fixes <http://bugs.gnu.org/24833 >.
Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/gl.scm (mesa)[source](patches): Remove.
[native-inputs]: Add conditional "mips-patch" input.
[arguments]: Add conditional 'apply-mips-patch' phase.
2016-11-03 11:24:39 +01:00
05e3865e07
gnu: gnurl: Update to 7.51.0 [fixes CVE-2016-{8615..8625}].
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.51.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-02 23:16:11 -04:00
b3cc0dce08
Merge branch 'master' into core-updates
2016-11-02 20:03:35 -04:00
e681e347c4
gnu: Add perl-getopt-long.
...
* gnu/packages/perl.scm (perl-getopt-long): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-02 14:23:24 +00:00
cbf5889fe5
gnu: curl: Update replacement to 7.51.0 [fixes CVE-2016-{8615..8625}].
...
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.51.0.
(curl-7.50.3): Replace with ...
(curl-7.51.0): ... this.
2016-11-02 12:01:37 +00:00
ac1dc6d12f
gnu: linux-libre: Update to 4.8.6.
...
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.6.
2016-11-02 07:31:53 -04:00
b3097a71c5
gnu: linux-libre@4.4: Update to 4.4.30.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.30.
2016-11-02 07:29:28 -04:00
d439aa36ce
gnu: perl-test-simple: Update to 1.302062.
...
* gnu/packages/perl.scm (perl-test-simple): Update to 1.302062.
2016-11-02 11:51:46 +01:00
24dfc13bfa
gnu: re2: Update to 2016-11-01.
...
* gnu/packages/regex.scm (re2): Update to 2016-11-01.
2016-11-02 05:34:09 +00:00
86c61a6bd1
gnu: isc-dhcp: Update to 4.3.5 [fixes CVE-2016-8864].
...
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.5. Update bundled
'bind' to 9.9.9-P4.
2016-11-01 21:46:09 -04:00
e777d07db9
gnu: iproute2: Update to 4.8.0.
...
* gnu/packages/linux.scm (iproute2): Update to 4.8.0.
[arguments]: Set Bash completion directory in #:make-flags.
2016-11-01 21:46:06 -04:00
2c1d46b257
gnu: love: Update to 0.10.2.
...
* gnu/packages/game-development.scm (love): Update to 0.10.2.
2016-11-01 21:03:18 -04:00
21f828e02e
gnu: emacs-debbugs: Update to 0.12.
...
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.12.
2016-11-01 22:23:48 +01:00
3325803b0b
gnu: bind: Update to 9.10.4-P4 [fixes CVE-2016-8864].
...
* gnu/packages/dns.scm (bind): Update to 9.10.4-P4.
2016-11-01 17:03:12 -04:00
e3e3e488a1
gnu: diffoscope: Update to 62.
...
* gnu/packages/package-management.scm (diffoscope): Update to 62.
2016-11-01 16:17:12 -04:00
bac3d6095d
gnu: python-django: Update to 1.10.3 [fixes CVE-2016-{9013,9014}].
...
* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.3.
[source]: Remove patch.
* gnu/packages/patches/python-django-fix-testcase.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-01 14:02:01 -04:00
b56d9ce304
gnu: xapian: Update to 1.4.1.
...
* gnu/packages/search.scm (xapian): Update to 1.4.1.
2016-11-01 10:37:19 +00:00
6846f08471
gnu: Correct hackage mirror usage.
...
* gnu/package/haskell.scm (ghc-data-accessor)[source]: Specify hackage
mirror.
(ghc-data-accessor-transformers)[source]: Same.
(ghc-gnuplot)[source]: Same.
2016-11-01 10:37:18 +02:00
40330e555f
gnu: icecat: Fix build with binutils >= 2.26.
...
* gnu/packages/patches/icecat-binutils.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Use it.
2016-10-31 20:59:40 -04:00
b3df4d7e57
gnu: Add speech-dispatcher.
...
* gnu/packages/speech.scm (speech-dispatcher): New variable.
2016-11-01 00:05:22 +00:00
0905048ab3
gnu: Add dotconf.
...
* gnu/packages/textutils.scm (dotconf): New variable.
2016-11-01 00:05:22 +00:00
6e9d5d5fba
gnu: librecad: Update to 2.1.3.
...
* gnu/packages/engineering.scm (librecad): Update to 2.1.3.
2016-10-31 23:10:48 +01:00
e6efcd5837
gnu: virt-manager: Fix build by including 'gtk-update-icon-cache'.
...
* gnu/packages/qemu.scm (virt-manager)[native-inputs]: Add gtk+:bin.
2016-10-31 22:44:30 +01:00
88dfd8b8aa
gnu: cups-minimal: Update to 2.2.1.
...
* gnu/packages/cups.scm (cups-minimal): Update to 2.2.1.
[source]: Use new https://github.com download URL.
2016-10-31 22:33:51 +01:00
65a3bdf7eb
gnu: borg: Run the tests with python-pytest-2.9.2.
...
* gnu/packages/backup.scm (borg)[native-inputs]: Use python-pytest-2.9.2.
2016-10-31 17:02:38 -04:00
0bc6ef2a87
gnu: Add python-pytest-2.9.2.
...
* gnu/packages/python.scm (python-pytest-2.9.2): New variable.
2016-10-31 17:02:34 -04:00
d76181a7a3
gnu: cross-libc: Use the correct libc.
...
* gnu/packages/cross-base.scm (cross-libc): Use cross-libc-for-target
to determine the correct libc to use.
2016-10-31 19:42:26 +02:00
fdc45ab1b0
gnu: imagemagick: Update to 6.9.6-3.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-3.
2016-10-31 13:31:32 -04:00
1a86b671ce
gnu: Add ghc-gnuplot.
...
* gnu/packages/haskell.scm (ghc-gnuplot): New variable.
2016-10-31 16:13:38 +01:00
a5cbef03ba
gnu: Add ghc-utility-ht.
...
* gnu/packages/haskell.scm (ghc-utility-ht): New variable.
2016-10-31 16:13:35 +01:00
81a1191922
gnu: Add ghc-data-access-transformers.
...
* gnu/packages/haskell.scm (ghc-data-access-transformers): New variable.
2016-10-31 16:13:33 +01:00
505e0150dc
gnu: Add ghc-data-accessor.
...
* gnu/packages/haskell.scm (ghc-data-accessor): New variable.
2016-10-31 16:13:31 +01:00
6af886f492
gnu: geiser-next: Re-introduce it.
...
* gnu/packages/emacs.scm (geiser-next): Re-introduce it.
2016-10-31 16:13:27 +01:00
149c652378
gnu: Add chez-scmutils.
...
* gnu/packages/chez.scm (chez-scmutils): New variable.
2016-10-31 16:13:25 +01:00
53b9684e33
gnu: Add chez-mit.
...
* gnu/packages/chez.scm (chez-mit): New variable.
2016-10-31 16:13:23 +01:00
08fc0d68f0
gnu: haskell-mode: Update to 16.1.
...
* gnu/packages/emacs.scm (haskell-mode): Update to 16.1.
[inputs]: Add 'emacs-el-search' and 'emacs-stream'.
[propagated-inputs]: Add 'emacs-dash'.
[arguments]: Add modules. Adapt 'pre-build' and 'install' phases.
2016-10-31 16:13:21 +01:00
0fc06f3eba
gnu: Add emacs-el-search.
...
* gnu/packages/emacs.scm (emacs-el-search): New variable.
2016-10-31 16:13:17 +01:00
8f50634ba4
gnu: Add emacs-stream.
...
* gnu/packages/emacs.scm (emacs-stream): New varaible.
2016-10-31 16:13:09 +01:00
5bde4503ee
gnu: ld-wrapper-boot0: Work around strict evaluation of (%current-system).
...
Reported by Mark H Weaver <mhw@netris.org>
Partly fixes <http://bugs.gnu.org/24832 >.
'ld-wrapper-boot0' was evaluating strictly instead of lazily, leading to
invalid system types.
* gnu/packages/base.scm (make-ld-wrapper): Turn #:target into a
one-argument procedure. Honor it.
* gnu/packages/commencement.scm (ld-wrapper-boot0): Fix 'name' argument
to 'make-ld-wrapper'. Make #:target argument a procedure.
* gnu/packages/cross-base.scm (cross-gcc): Adjust #:target argument.
2016-10-31 16:06:30 +01:00
c907beec92
gnu: fio: Update to 2.15.
...
* gnu/packages/benchmark.scm (fio): Update to 2.15.
2016-10-31 11:15:08 +00:00
58fdab1d13
gnu: Add ccid.
...
* gnu/packages/security-token.scm (ccid): New variable.
2016-10-31 10:10:26 +00:00
6d1b3bf55b
gnu: openocd: Correct license.
...
* gnu/packages/embedded.scm (openocd)[license]: Change to gpl2+.
2016-10-31 10:41:54 +01:00
77e9c9931e
gnu: shotwell: Fix build by including 'gtk-update-icon-cache'.
...
* gnu/packages/gnome.scm (shotwell)[native-inputs]: Add gtk+:bin.
2016-10-31 01:28:52 -04:00
205f0107bb
Merge branch 'master' into core-updates
2016-10-30 19:19:21 -04:00
b89cbf5832
gnu: libtiff: Fix CVE-2016-5652.
...
* gnu/packages/patches/libtiff-CVE-2016-5652.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff-fixed)[source]: Use it.
2016-10-30 19:07:49 -04:00
a7db8540a7
gnu: guix: Always depend on the development dependencies.
...
Suggested by Chris Marusich <cmmarusich@gmail.com> at
<https://lists.gnu.org/archive/html/guix-devel/2016-10/msg00425.html >.
* gnu/packages/package-management.scm (guix-0.11.0)[native-inputs]: Add
Autoconf, Automake, Gettext, Texinfo, Graphviz, and Help2man.
(guix-devel)[native-inputs]: Remove.
2016-10-30 23:14:27 +01:00
ffba9d598e
gnu: emacs-debbugs: Update to 0.11.
...
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.11.
2016-10-30 22:59:46 +01:00
1ef8b72a7f
system: Record store file system info in each generation.
...
* gnu/system.scm (<boot-parameters>)[store-device, store-mount-point]:
New fields.
(read-boot-parameters): Initialize them.
(operating-system-grub.cfg): Likewise. Remove STORE-FS argument from
call to 'grub-configuration-file'.
(operating-system-parameters-file): Add 'store' element in
'boot-parameters'.
* gnu/system/grub.scm (strip-mount-point): Replace 'store-fs' parameter
by 'mount-point'; adjust accordingly. Adjust callers.
(<menu-entry>)[device, device-mount-point]: New fields.
(eye-candy): Replace 'root-fs' parameter by 'store-device'; add
'store-mount-point'. Use keyword arguments for 'system' and 'port'.
(grub-root-search): Remove 'root-fs' by 'device' and adjust
accordingly.
(grub-configuration-file): Remove 'store-fs' parameter. Adjust
accordingly.
* guix/scripts/system.scm (previous-grub-entries): Initialize 'device'
and 'device-mount-point' fields from PARAMS.
* doc/guix.texi (GRUB Configuration): Document 'device' and
'device-mount-point'. Explain that 'linux' can be prefixed by a GRUB
device name.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-10-30 22:59:46 +01:00
b7f3cf2c9a
gnu: Add nethogs.
...
* gnu/packages/networking.scm (nethogs): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-30 15:38:40 -04:00
45b4f12727
gnu: Add python-imagesize.
...
* gnu/packages/python.scm (python-imagesize, python2-imagesize): New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-30 15:31:11 -04:00
67a3b2dd4e
gnu: python-pyusb: Prettify library substitution.
...
* gnu/packages/libusb.scm (python-pyusb)[arguments]: Use srfi-1 to make
the "fix-libusb-reference" phase clearer.
2016-10-30 18:57:18 +01:00
a8dd960ac0
gnu: python-joblib: Disable failing tests.
...
* gnu/packages/python.scm (python-joblib)[arguments]: Add phase to
disable failing tests.
2016-10-30 18:54:41 +01:00
f34ef3317e
gnu: python-joblib: Update to 0.10.3.
...
* gnu/packages/python.scm (python-joblib): Update to 0.10.3.
[native-inputs]: Add python-sphinx, python-docutils, python-numpydoc.
2016-10-30 17:04:24 +01:00
bae678296a
gnu: python-waf: Download over https.
...
* gnu/packages/python.scm (python-waf)[source]: Use https.
2016-10-30 10:43:53 +02:00
31c6bfed58
gnu: samba: Update to 4.5.1.
...
* gnu/packages/samba.scm (samba): Update to 4.5.1.
2016-10-30 10:41:31 +02:00
e3c1311a5d
gnu: git: Update to 2.10.2.
...
* gnu/packages/version-control.scm (git): Update to 2.10.2.
2016-10-29 23:02:14 -04:00
593dfdc33b
Merge branch 'master' into core-updates
2016-10-29 22:16:47 -04:00
59f1298558
gnu: python-nltk: Disable the test suite.
...
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-nltk to fail.
* gnu/packages/python.scm (python-nltk, python2-nltk)[arguments]:
Disable the tests.
2016-10-29 22:16:19 -04:00
2ddbfa8c06
gnu: python-pyquery: Add inputs for test suite.
...
* gnu/packages/python.scm (python-pyquery,
python2-pyquery)[native-inputs]: Add python-webob and python-webtest.
2016-10-29 22:16:19 -04:00
ad967bf08d
gnu: dico: Fix test failure.
...
* gnu/packages/dico.scm (dico)[source]: Add 'snippet' and 'modules'.
2016-10-30 09:53:11 +08:00
326f8285b3
gnu: python-graphql-core: Disable the test suite.
...
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-graph-ql to fail.
* gnu/packages/python.scm (python-graphql-core,
python2-graphql-core)[arguments]: Disable the tests.
2016-10-29 21:50:58 -04:00
062c7e43ed
Merge branch 'master' into core-updates
2016-10-29 21:44:44 -04:00
269d9172ff
gnu: python-pika: Add inputs for test suite.
...
* gnu/packages/python.scm (python-pika, python2-pika)[native-inputs]: Add
python-pyev, python-tornado.
2016-10-29 21:43:24 -04:00
329b4b3b69
gnu: Add python-pyev.
...
* gnu/packages/python.scm (python-pyev, python2-pyev): New variables.
2016-10-29 21:43:24 -04:00
bae1871059
gnu: python-prompt-toolkit: Disable the test suite.
...
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-prompt-toolkit to fail.
* gnu/packages/python.scm (python-prompt-toolkit,
python2-prompt-toolkit)[arguments]: Disable the tests.
2016-10-29 21:43:24 -04:00
10797a0ae0
gnu: python-publicsuffix2: Disable the test suite.
...
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-publicsuffix2 to fail.
* gnu/packages/python.scm (python-publicsuffix2, python2-publicsuffix2)
[arguments]: Disable the tests.
2016-10-29 21:43:23 -04:00
a2eab4223d
gnu: python-pyechonest: Remove package.
...
* gnu/packages/music.scm (python-pyechonest): Remove variable.
2016-10-29 21:43:14 -04:00
5b83b7b854
gnu: Add openocd.
...
* gnu/packages/embedded.scm (openocd): New variable.
* gnu/packages/patches/openocd-nrf52.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
2016-10-30 02:34:26 +01:00
91ba693586
gnu: Add jimtcl.
...
* gnu/packages/embedded.scm (jimtcl): New variable.
2016-10-30 02:33:58 +01:00
e5e45c067d
gnu: Add libjaylink.
...
* gnu/packages/embedded.scm (libjaylink): New variable.
2016-10-30 02:33:53 +01:00
3d74f12e63
gnu: Add hidapi.
...
* gnu/packages/libusb.scm (hidapi): New variable.
2016-10-30 02:03:04 +02:00
94f36a4f5e
gnu: Add gdb-arm-none-eabi.
...
* gnu/packages/embedded.scm (gdb-arm-none-eabi): New variable.
2016-10-30 02:02:46 +02:00
f4fe6c991c
gnu: cups-filters: Remove duplicate ‘--with-gs-path=’ flag.
...
* gnu/packages/cups.scm (cups-filters)[arguments]: Remove redundant
‘--with-gs-path=’ from #:configure-flags, left over from a botched merge.
2016-10-30 01:15:53 +02:00
4ab016e0ab
gnu: cups-filters: Update to 1.11.5.
...
* gnu/packages/cups.scm (cups-filters): Update to 1.11.5.
[arguments]: Add ‘--with-gs-path=’ to #:configure-flags.
[inputs]: Add mupdf.
2016-10-30 01:08:15 +02:00
eaf72e218e
gnu: icecat: Enable gtk3 support.
...
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Add gtk+.
[arguments]: Use --enable-default-toolkit=cairo-gtk3.
2016-10-30 01:03:09 +02:00
225d6c049e
gnu: sdcc: Enable ucsim.
...
* gnu/packages/sdcc.scm (arguments)[configure-flags]: Add --enable-ucsim.
2016-10-30 01:03:09 +02:00
6cf626e8b3
gnu: Add yadifa.
...
* gnu/packages/dns.scm (yadifa): New variable.
2016-10-30 00:53:50 +02:00
8ed14711dc
gnu: hplip: Update to 3.16.10.
...
* gnu/packages/cups.scm (hplip): Update to 3.16.10.
2016-10-30 00:47:28 +02:00
9efa472fba
gnu: plasma-framework: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (plasma-framework): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
6c6e8b19e4
gnu: kxmlrpcclient: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kxmlrpcclient): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
19fbf93f34
gnu: kxmlgui: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kxmlgui): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
8b9b0e5eb7
gnu: kwallet: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kwallet): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
f07f67093d
gnu: ktextwidgets: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (ktextwidgets): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
b0791cf9aa
gnu: ktexteditor: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (ktexteditor): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
886d8155c1
gnu: kservice: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kservice): Update to 5.27.0.
[native-inputs]: Add bison and flex-2.6.1.
2016-10-29 23:51:43 +02:00
dc219cc6da
gnu: krunner: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (krunner): Update to 5.27.0.
[arguments]: Return #t.
2016-10-29 23:51:43 +02:00
3a1e972d50
gnu: kpeople: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kpeople): Update to 5.27.0.
[arguments]: Return #t.
2016-10-29 23:51:43 +02:00
33fa4658bd
gnu: kparts: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kparts): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
59cb98e135
gnu: knotifyconfig: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (knotifyconfig): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
7064ad3fca
gnu: knewstuff: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (knewstuff): Update to 5.27.0.
[arguments]: Return #t.
2016-10-29 23:51:43 +02:00
ed3634e756
gnu: kio: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kio): Update to 5.27.0.
[arguments]: Return #t.
2016-10-29 23:51:43 +02:00
89d522a360
gnu: kinit: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kinit): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
c8ddc56e6c
gnu: kiconthemes: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kiconthemes): Update to 5.27.0.
[arguments]: Return #t.
2016-10-29 23:51:43 +02:00
2b677becbd
gnu: kglobalaccel: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kglobalaccel): Update to 5.27.0.
[inputs]: Add kservice.
2016-10-29 23:51:43 +02:00
25ebad65bf
gnu: kemoticons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kemoticons): Update to 5.27.0.
[arguments]: Return #t.
2016-10-29 23:51:43 +02:00
aa072198c6
gnu: kdesu: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kdesu): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
9caef00bd1
gnu: kdesignerplugin: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kdesignerplugin): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
8e963d123c
gnu: kded: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kded): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
46e1ac0be8
gnu: kdeclarative: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kdeclarative): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
986d0eae65
gnu: kconfigwidgets: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kconfigwidgets): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
8ed8a9f53a
gnu: kcmutils: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kcmutils): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
b58e9bea2e
gnu: kbookmarks: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kbookmarks): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
4902494f6d
gnu: kactivities-stats: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kactivities-stats): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
04fb93e0e3
gnu: kactivities: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kactivities): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
442f2beae0
gnu: baloo: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (baloo): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
f7c2026fea
gnu: kunitconversion: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kunitconversion): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
84164f7ff8
gnu: kpty: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kpty): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
0e6c305748
gnu: kpackage: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kpackage): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
7507399846
gnu: knotifications: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (knotifications): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
4a9f3bf33b
gnu: kjobwidgets: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kjobwidgets): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
2d64fdb157
gnu: kimageformats: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kimageformats): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
3f34662b12
gnu: kfilemetadata: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kfilemetadata): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
f5dae6aec1
gnu: kdoctools: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kdoctools): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
075eeb355b
gnu: kcrash: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kcrash): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
17b5144a18
gnu: kcompletion: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kcompletion): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
62dee732f4
gnu: kauth: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kauth): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
01fc411d96
gnu: threadweaver: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (threadweaver): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
71b37f7ab6
gnu: sonnet: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (sonnet): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
6ad3befef2
gnu: solid: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (solid): Update to 5.27.0.
[native-inputs]: Add flex-2.6.1.
2016-10-29 23:51:43 +02:00
beb21382d3
gnu: oxygen-icons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (oxygen-icons): Update to 5.27.0.
[native-inputs]: Add fdupes.
2016-10-29 23:51:43 +02:00
c3fefc81ce
gnu: networkmanager-qt: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (networkmanager-qt): Update to 5.27.0
and fix indentation.
2016-10-29 23:51:43 +02:00
48e789daa8
gnu: modemmanager-qt: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (modemmanager-qt): Update to 5.27.0
and fix indentation.
2016-10-29 23:51:43 +02:00
48311df949
gnu: kwindowsystem: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
5a3f070931
gnu: kwidgetsaddons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kwidgetsaddons): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
3dfcaf33c8
gnu: kwayland: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kwayland): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
a7ec016cd5
gnu: kplotting: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kplotting): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
701d7a9b50
gnu: kitemviews: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kitemviews): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
110e4bea7a
gnu: kitemmodels: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kitemmodels): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
bdf84c9e2f
gnu: kidletime: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kidletime): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
e751556a14
gnu: ki18n: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (ki18n): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
ee6cebf6a9
gnu: kguiaddons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kguiaddons): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
ce45f9ef7b
gnu: kdnssd: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kdnssd): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
e361ff6a2e
gnu: kdbusaddons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kdbusaddons): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
b69b81ca2e
gnu: kcoreaddons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kcoreaddons): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
a6fec16590
gnu: kconfig: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kconfig): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
78fc358f3e
gnu: kcodecs: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kcodecs): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
ea95b701dc
gnu: karchive: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (karchive): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
8fea1a2378
gnu: kapidox: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kapidox): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
02dc8847c8
gnu: breeze-icons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (breeze-icons): Update to 5.27.0.
[native-inputs]: Add fduptes and libxml2.
[arguments]: Disable tests.
2016-10-29 23:51:43 +02:00
bfa96eba56
gnu: bluez-qt: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (bluez-qt): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
5eb1b33b6b
gnu: attica: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (attica): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
84dee85291
gnu: phonon: Fix indentation.
...
* gnu/packages/kde-frameworks.scm (phonon): Fix indentation.
2016-10-29 23:51:43 +02:00
bd0fc238f8
gnu: kpmcore: Fix indentation.
...
* gnu/packages/kde-frameworks.scm (kpmcore): Fix indentation.
2016-10-29 23:51:43 +02:00
443a60aaae
gnu: gpgmepp: Update to 16.08.2.
...
* gnu/packages/kde-frameworks (gpgmepp): Update to 16.08.2.
2016-10-29 23:51:43 +02:00
1c484e980f
gnu: extra-cmake-modules: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (extra-cmake-modules): Update to
5.27.0.
2016-10-29 23:51:43 +02:00
b68bf48af9
gnu: Add flex-2.6.1.
...
* gnu/packages/flex.scm (flex-2.6.1): New variable.
2016-10-29 23:51:43 +02:00
ee5fb7ee50
gnu: Add python2-rpython.
...
* gnu/packages/python.scm (python2-rpython): New variable.
2016-10-29 23:49:05 +02:00
8f210c0e0e
gnu: ccache: Update to 3.3.3.
...
* gnu/packages/ccache.scm (ccache): Update to 3.3.3.
2016-10-30 00:05:26 +03:00
7dd55dfeca
gnu: python-waf: Update to 1.9.5.
...
* gnu/packages/python.scm (python-waf): Update to 1.9.5.
[arguments]: Shorten custom build phase.
[source]: Use http.
[home-page]: Use http.
2016-10-30 00:05:13 +03:00
603d55de4a
gnu: ffmpeg: Update to 3.2.
...
* gnu/packages/video.scm (ffmpeg): Update to 3.2.
2016-10-29 22:16:44 +03:00
0b37c4cda7
gnu: vapoursynth: Update to 35.
...
* gnu/packages/video.scm (vapoursynth): Update to 35.
2016-10-29 22:16:44 +03:00
812de5bf1e
gnu: offlineimap: Update to 7.0.9.
...
* gnu/packages/mail.scm (offlineimap): Update to 7.0.9.
2016-10-29 22:16:43 +03:00
4d73cb5441
gnu: chess: Update to 6.2.4.
...
* gnu/packages/games.scm (chess): Update to 6.2.4.
[home-page]: Use https.
2016-10-29 22:16:42 +03:00
a7e75125c8
gnu: vim: Update to 8.0.0054.
...
* gnu/packages/vim.scm (vim): Update to 8.0.0054.
2016-10-29 20:04:57 +01:00
dadf6622e9
gnu: borg: Update to 1.0.8.
...
* gnu/packages/backup.scm (borg): Update to 1.0.8.
2016-10-29 14:24:51 +02:00
58c4f11e43
gnu: Add radeontop.
...
* gnu/packages/linux.scm (radeontop): New variable.
2016-10-29 14:19:01 +02:00
b8df914f37
gnu: linux-libre: Update to 4.8.5.
...
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.5.
2016-10-28 20:11:20 -04:00
a56b3229f4
gnu: linux-libre@4.4: Update to 4.4.28.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.28.
2016-10-28 20:09:02 -04:00
fba78d18c2
gnu: mumps: Upgrade to 5.0.2.
...
* gnu/packages/maths.scm (mumps): Upgrade to 5.0.2.
[arguments]: Properly return boolean from install phase.
2016-10-28 15:53:32 -05:00
a9afb956b3
gnu: vim: Update to 8.0.0051.
...
* gnu/packages/vim.scm (vim): Update to 8.0.0051.
[source]: Change to github release archive.
2016-10-28 20:55:09 +01:00
0df955401f
Merge branch 'master' into core-updates
2016-10-28 13:59:32 -04:00
044ac8d294
gnu: python-twobitreader: Update to 3.1.4.
...
* gnu/packages/bioinformatics.scm (python-twobitreader, python2-twobitreader):
Update to 3.1.4.
2016-10-28 13:59:11 -04:00
900fb8d005
gnu: python-twobitreader: Disable the test suite.
...
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-twobitreader to fail.
* gnu/packages/bioinformatics.scm (python-twobitreader,
python2-twobitreader)[arguments]: Disable the tests.
2016-10-28 13:59:11 -04:00
ed8bc028f7
gnu: Add emacs-org-trello.
...
* gnu/packages/emacs.scm (emacs-org-trello): New variable.
2016-10-28 19:50:32 +02:00
a6447e7fb6
Merge branch 'master' into core-updates
2016-10-28 13:40:17 -04:00
e359b31a60
gnu: python-wsgiproxy2: Disable the test suite.
...
* gnu/packages/python.scm (python-wsgiproxy2, python2-wsgiproxy2)[arguments]:
Disable the tests.
2016-10-28 13:39:38 -04:00
67fd4a12cb
gnu: python-beautifulsoup4: Update to 4.5.1.
...
* gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4):
Update to 4.5.1.
2016-10-28 13:39:38 -04:00
5f37f0b66e
gnu: python-beautifulsoup4: Run the test suite.
...
* gnu/packages/python.scm (python-beautifulsoup4)[arguments]: Add field
run python-2 -> python-3 conversion script and test suite.
(python2-beautifulsoup4)[arguments]: Specify use of python-2.
2016-10-28 13:39:37 -04:00
92c3ef2cf3
gnu: python-feedparser: Disable the test suite.
...
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-feedparser to fail.
* gnu/packages/python.scm (python-feedparser, python2-feedparser)[arguments]:
Disable the tests.
2016-10-28 13:39:37 -04:00
95bff4f697
gnu: libwebp: Fix CVE-2016-9085.
...
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libwebp)[source]: Use it.
2016-10-28 13:39:37 -04:00
b2ed5ca7aa
gnu: libwebp: Update to 0.5.1.
...
* gnu/packages/image.scm (libwebp): Update to 0.5.1.
2016-10-28 13:39:33 -04:00
36e5d10387
gnu: Add emacs-request.
...
* gnu/packages/emacs.scm (emacs-request): New variable.
2016-10-28 19:29:35 +02:00
fc381a3325
gnu: Add qwt.
...
* gnu/packages/qt.scm (qwt): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-28 14:47:36 +01:00
aa98b3b273
gnu: gxmessage: Don't install 'icon-theme.cache'.
...
* gnu/packages/gxmessage.scm (gxmessage)[arguments]: Add
'skip-gtk-update-icon-cache' phase.
[native-inputs]: Remove gtk+:bin.
2016-10-28 21:04:11 +08:00
3b6f8b579b
gnu: python-parse: Fix patch file name in gnu/local.mk.
...
This is a followup to commit aa6c09ed71
2016-10-27 20:31:19 -04:00
3d82676919
Merge branch 'master' into core-updates
2016-10-27 20:21:26 -04:00
f9a65318dd
gnu: python-parse: Use 'modify-phases' syntax.
...
* gnu/packages/python.scm (python-parse)[arguments]: Use 'modify-phases'
syntax.
2016-10-27 23:29:56 +03:00
aa6c09ed71
gnu: python-parse: Fix failing test.
...
* gnu/packages/python.scm (python-parse)[origin]: Add patch.
* gnu/packages/patches/python-parse-too-many-fields.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-10-27 23:28:07 +03:00
d18c69aa2a
gnu: python-pytest-django: Add missing test input.
...
* gnu/packages/django.scm (python-pytest-django)[native-inputs]: Add
python-django.
2016-10-27 22:27:31 +03:00
fa7cd33378
gnu: python-django-filter: Add inputs for tests.
...
* gnu/packages/django.scm (python-django-filter)[native-inputs]: Add
python-django, python-mock.
2016-10-27 22:18:30 +03:00
13c4d8746b
gnu: python-wtforms: Skip optional tests.
...
* gnu/packages/python.scm (python-wtforms)[arguments]: Add a phase
preventing tests from failing when optional tests aren't run.
2016-10-27 22:13:22 +03:00
b6e0804953
gnu: lightning: Add missing input.
...
* gnu/packages/assembly.scm (lightning)[native-inputs]: Add zlib.
2016-10-27 21:13:05 +03:00
7500e42b3e
gnu: Add r-mutationalpatterns.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): New variable.
2016-10-27 20:07:05 +02:00
377bfbc1f8
gnu: gxmessage: Add missing input.
...
* gnu/packages/gxmessage.scm (gxmessage)[native-inputs]: Add gtk+3-bin.
2016-10-27 21:03:08 +03:00
327be74720
gnu: jasper: Updat eto 1.900.16.
...
* gnu/packages/image.scm (japer): Update to 1.900.16.
2016-10-27 20:14:17 +03:00
233fbb6102
gnu: windowmaker: Add support for more image formats.
...
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Add giflib, libpng,
and libtiff.
2016-10-27 10:51:05 -04:00
b5ce25cc0e
gnu: r: Use uname from Guix
...
* gnu/packages/statistics.scm (r): Use uname from Guix.
2016-10-27 16:37:24 +02:00
6178274d19
gnu: python-urllib3: Update to 1.18.1.
...
* gnu/packages/python.scm (python-urllib3): Update to 1.18.1.
[home-page]: Use https URL.
2016-10-27 14:03:07 +01:00
245cc5f5d5
tests: Test installation with a RAID root partition.
...
* gnu/tests/install.scm (%raid-root-os, %raid-root-os-source)
(%raid-root-installation-script, %test-raid-root-os): New variables.
2016-10-27 13:48:52 +02:00
49baaff4d2
file-systems: 'disk-partitions' detected partitions from mapped devices.
...
Previously, partitions of mdadm- or cryptsetup-produced block devices
would not be returned by 'disk-partitions'.
* gnu/build/file-systems.scm (disk-partitions)[last-character]: New
procedure.
[partition?]: Add 'name' parameter and rewrite. Adjust caller.
* gnu/build/file-systems.scm (ENOENT-safe): Silently ignore ENOMEDIUM.
2016-10-27 13:48:52 +02:00
b800b8da21
tests: Add #:memory-size parameter for the command to run the installed OS.
...
* gnu/tests/install.scm (qemu-command/writable-image): Add #:memory-size
parameter and honor it.
2016-10-27 13:48:52 +02:00
4ed2f515d6
mapped-devices: Use 'mdadm-static' in 'raid-device-mapping'.
...
* gnu/system/mapped-devices.scm (open-raid-device, close-raid-device):
Use MDADM-STATIC instead of MDADM. Use 'file-append'.
2016-10-27 13:48:52 +02:00
631fda7e90
gnu: Add mdadm-static.
...
* gnu/packages/linux.scm (mdadm-static): New variable.
2016-10-27 13:48:52 +02:00
7d876afdd8
gnu: libmikmod: Update to 3.3.10.
...
* gnu/packages/sdl.scm (libmikmod): Update to 3.3.10.
2016-10-27 12:23:04 +03:00
355d8e873b
gnu: sdl2: Update to 2.0.5.
...
* gnu/packages/sdl.scm (sdl2): Update to 2.0.5.
2016-10-27 12:23:04 +03:00
5d5790ce44
gnu: Use 'https' for libsdl urls.
...
* gnu/packages/sdl.scm (sdl, sdl2, sdl-image, sdl-mixer, sdl-net)
(sdl-ttf, sdl2-image, sdl2-ttf)[source]: Use https.
[home-page]: Use https.
2016-10-27 12:23:03 +03:00
483b7ce7ae
gnu: mcelog: Update to 144.
...
* gnu/packages/linux.scm (mcelog): Update to 144.
2016-10-27 11:03:34 +02:00
6270769dc2
gnu: btrfs-progs: Update to 4.8.2.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
2016-10-27 11:03:34 +02:00
cd9ed6c1cb
gnu: gnupg: Add support for pcsc-lite.
...
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add pcsc-lite.
[arguments]: Rename phase 'patch-config-files' to 'patch-paths'. Patch
`scd/scdaemon.c' with absolute path of libpcsclite.so.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27 09:56:54 +01:00
a6b256affc
gnu: Add pcsc-lite.
...
* gnu/packages/security-token.scm (pcsc-lite): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27 09:56:52 +01:00
8888fe826c
gnu: Add dbacl.
...
* gnu/packages/textutils.scm (dbacl): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-27 11:42:39 +03:00
5fd84e288c
gnu: valgrind: Use 'modify-phases' syntax.
...
* gnu/packages/valgrind.scm (valgrind)[arguments]: Use 'modify-phases'
syntax.
2016-10-27 11:42:38 +03:00
e68168eb87
gnu: valgrind: Update to 3.12.0.
...
* gnu/packages/valgrind.scm (valgrind): Update to 3.12.0.
2016-10-27 11:42:29 +03:00
49a531f545
gnu: python-pathlib2: Add comment.
...
As suggested by Efraim Flashner.
* gnu/packages/python.scm (python-pathlib2): Add comment.
2016-10-27 10:09:10 +02:00
f02fb6dd6b
gnu: btrfs-progs: Update to 4.8.2.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
2016-10-27 00:43:37 -04:00
9045c086df
gnu: blender: Update to 2.78a.
...
* gnu/packages/graphics.scm (blender): Update to 2.78a.
2016-10-27 00:30:47 -04:00
fad8bf977d
gnu: python-s3transfer: Run the tests.
...
* gnu/packages/python.scm (python-s3transfer, python2-s3transfer)[arguments]:
Use python-nose to run the tests.
[native-inputs]: Add python-mock and python-nose.
2016-10-26 21:41:28 -04:00
522fc32ebd
gnu: shotwell: Update to 0.25.0.
...
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0.
[inputs]: Add gcr.
2016-10-26 20:10:05 -04:00
30b1267830
gnu: vdirsyncer: Update to 0.14.0.
...
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.0.
2016-10-26 19:56:15 -04:00
5479aa2b7c
tests: Test installation with store on a separate partition.
...
This is a followup to 0f65f54ebd
2016-10-27 01:00:42 +02:00
02c73adcdf
Merge branch 'master' into core-updates
2016-10-26 19:00:06 -04:00
a19da40630
gnu: perl-www-curl: Fix build failure.
...
* gnu/packages/patches/perl-www-curl-remove-symbol.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-www-curl)[source]: Use it.
2016-10-26 18:44:16 -04:00
5d73e30000
gnu: Add lci.
...
* gnu/packages/lolcode.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 20:39:27 +03:00
8caeb11772
gnu: Add autossh.
...
* gnu/packages/ssh.scm (autossh): New variable.
2016-10-26 11:22:17 -05:00
aba6463975
gnu: r: Update to 3.3.1.
...
* gnu/packages/statistics.scm (r): Update to 3.3.1.
2016-10-26 18:14:17 +02:00
a8e893b0b8
gnu: r-matrixstats: Update to 0.51.0.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
2016-10-26 16:23:32 +02:00
fd54f65e72
gnu: r-r-utils: Update to 2.4.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
2016-10-26 16:23:32 +02:00
89242ea47f
gnu: r-irlba: Update to 2.1.2.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
2016-10-26 16:23:31 +02:00
4f2ebc16ce
gnu: r-codetools: Update to 0.2-15.
...
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
2016-10-26 16:23:31 +02:00
cf738e961e
gnu: r-snow: Update to 0.4-2.
...
* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
2016-10-26 16:23:31 +02:00
41bc22a7de
gnu: r-backports: Update to 1.0.4.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
2016-10-26 16:23:30 +02:00
72263db73d
gnu: r-foreign: Update to 0.8-67.
...
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
2016-10-26 16:23:30 +02:00
130410d941
gnu: r-cluster: Update to 2.0.5.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
2016-10-26 16:23:29 +02:00
e7622804aa
gnu: r-acepack: Update to 1.4.0.
...
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
2016-10-26 16:23:29 +02:00
bff4dc6324
gnu: r-r6: Update to 2.2.0.
...
* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
2016-10-26 16:23:29 +02:00
e0a9093139
gnu: r-evaluate: Update to 0.10.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
2016-10-26 16:23:28 +02:00
2d9da70bbe
gnu: r-reshape2: Update to 1.4.2.
...
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
2016-10-26 16:23:28 +02:00
c2a9e99134
gnu: r-stringi: Update to 1.1.2.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
2016-10-26 16:23:28 +02:00
03f72a1e1f
gnu: r-matrix: Update to 1.2-7.1.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
2016-10-26 16:23:27 +02:00
9e087a1fde
gnu: r-colorspace: Update to 1.2-7.
...
* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
2016-10-26 16:23:27 +02:00
e1c2b7e2e1
gnu: r-jsonlite: Update to 1.1.
...
* gnu/packages/web.scm (r-jsonlite): Update to 1.1.
2016-10-26 16:23:27 +02:00
2ffcd6607b
gnu: r-curl: Update to 2.2.
...
* gnu/packages/web.scm (r-curl): Update to 2.2.
2016-10-26 16:23:26 +02:00
a46cc723ff
gnu: r-seqinr: Update to 3.3-3.
...
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-3.
2016-10-26 16:23:26 +02:00
062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0.
...
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
2016-10-26 16:23:25 +02:00
7397cd9e3f
gnu: armadillo: Update to 7.500.0.
...
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
2016-10-26 16:23:25 +02:00
8e1369f19a
gnu: r-rmarkdown: Update to 1.1.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
2016-10-26 16:23:25 +02:00
c70271ec48
gnu: bioperl-minimal: Update to 1.7.0.
...
* gnu/packages/bioinformatics.scm (bioperl-minimal): Update to 1.7.0.
2016-10-26 16:23:24 +02:00
39df253e2b
gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a.
...
The fix from upstream did not apply cleanly due to many context changes.
This was adapted by cloning mupdf 1.9a from git and fixing conflicts
after applying our patches and cherry-picking upstream commit 1e03c06.
This is a follow-up to 47a04fca99
2016-10-26 15:03:42 +01:00
b2a2232c33
gnu: python-certifi: Update to 2016.8.31.
...
* gnu/packages/python.scm (python-certifi): Update to 2016.8.31.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 14:31:16 +03:00
07b1fb8675
gnu: security-token: Use 'license:' prefix.
...
* gnu/packages/security-token.scm (libyubikey)[license]: Add prefix.
(ykclient)[license]: Add prefix.
2016-10-26 11:00:58 +01:00
f9c339603d
gnu: yubico.scm: Rename to security-token.scm.
...
* gnu/packages/yubico.scm: Delete file.
* gnu/packages/security-token.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2016-10-26 10:45:49 +01:00
7a6213cbd7
gnu: offlineimap: Install documentation.
...
* gnu/packages/mail.scm (offlineimap)[native-inputs]: Add asciidoc and
libxslt.
[arguments]: Add phases 'build-documentation' and
'install-documentation' to build and install manpages. Also remove
unneeded key 'inputs' from 'wrap-binary' phase.
2016-10-26 10:45:49 +01:00
d2a9b531fb
gnu: notmuch: Update to 0.23.1.
...
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/mail.scm (notmuch): Update to 0.23.1. Remove patch.
2016-10-26 10:45:49 +01:00
8f5f6c922f
gnu: vlc: Add x265 support.
...
* gnu/packages/video.scm (vlc)[inputs]: Add x265.
2016-10-26 12:19:19 +03:00
e3cb00d210
gnu: gst-plugins-bad: Add x265 support.
...
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add x265.
2016-10-26 12:19:18 +03:00
d505801a06
gnu: ffmpeg: Add x265 support.
...
* gnu/packages/video.scm (ffmpeg)[inputs]: Add x265.
[arguments]: Add '--enable-libx265' flag.
2016-10-26 12:19:18 +03:00
7bc7ffc243
gnu: Add x265.
...
* gnu/packages/video.scm (x265): New variable.
2016-10-26 12:19:18 +03:00
1df790d50d
gnu: Add psyclpc.
...
* gnu/packages/psyc.scm (psyclpc): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 11:29:35 +03:00
19262a718e
gnu: opensmtpd: Fix 'license' field.
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* gnu/packages/mail.scm (opensmtpd)[license]: Use LICENSE:OPENSSL, not
OPENSSL.
(opensmtpd-extras)[license]: Likewise.
2016-10-26 10:19:18 +02:00
59198f8fff
gnu: r-genomationdata: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.6.0.
2016-10-26 09:28:23 +02:00
e357bec836
gnu: r-bamsignals: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.6.0.
2016-10-26 09:28:23 +02:00
53ca52f013
gnu: r-rhtslib: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.6.0.
[native-inputs]: Add autoconf.
2016-10-26 09:28:23 +02:00
da22da862b
gnu: r-zlibbioc: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.20.0.
2016-10-26 09:28:22 +02:00
809251e164
gnu: r-motifrg: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.18.0.
2016-10-26 09:28:22 +02:00
21d6c7a3e1
gnu: r-seqlogo: Update to 1.40.0.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.40.0.
2016-10-26 09:28:22 +02:00
51c3c4900f
gnu: r-genomation: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.6.0.
[propagated-inputs]: Add r-rcpp, r-htslib, r-runit, r-s4vectors.
[inputs]: Add zlib.
2016-10-26 09:28:21 +02:00
e92dd6f5e0
gnu: r-seqpattern: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.6.0.
[propagated-inputs]: Add r-kernsmooth.
2016-10-26 09:28:21 +02:00
acf6f7e0c3
gnu: r-impute: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.48.0.
2016-10-26 09:28:21 +02:00
3d74c04451
gnu: r-bsgenome: Update to 1.42.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.42.0.
2016-10-26 09:28:20 +02:00
30ec4de738
gnu: r-topgo: Update to 2.26.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.26.0.
[propagated-inputs]: Add r-dbi.
2016-10-26 09:28:20 +02:00
3587b464fc
gnu: r-graph: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.52.0.
2016-10-26 09:28:19 +02:00
d1b1587cad
gnu: r-go-db: Update to 3.4.0.
...
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.4.0.
2016-10-26 09:28:19 +02:00
b17aac083e
gnu: r-genomicfeatures: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.0.
2016-10-26 09:28:18 +02:00
6a45fd9aea
gnu: r-rtracklayer: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.0.
2016-10-26 09:28:18 +02:00
4ab32f0cd6
gnu: r-genomicalignments: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
1.10.0.
2016-10-26 09:28:18 +02:00
08da08d296
gnu: r-summarizedexperiment: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
1.4.0.
2016-10-26 09:28:17 +02:00
c0ccef41ae
gnu: r-rsamtools: Update to 1.26.1.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.1.
2016-10-26 09:28:17 +02:00
47d39b6e7a
gnu: r-biostrings: Update to 2.42.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.0.
2016-10-26 09:28:17 +02:00
89559a124e
gnu: r-biocparallel: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.0.
2016-10-26 09:28:16 +02:00
9405333186
gnu: r-biomart: Update to 2.30.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.30.0.
2016-10-26 09:28:16 +02:00
e45dc05781
gnu: r-annotationdbi: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.0.
2016-10-26 09:28:16 +02:00
464870caf7
gnu: r-biobase: Update to 2.34.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.34.0.
2016-10-26 09:28:15 +02:00
92a740afac
gnu: r-genomicranges: Update to 1.26.1.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.1.
[propagated-inputs]: Add r-iranges, r-s4vectors.
2016-10-26 09:28:15 +02:00
1d048589ca
gnu: r-xvector: Update to 0.14.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.0.
2016-10-26 09:28:14 +02:00
753bc32b8e
gnu: r-limma: Update to 3.30.0.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.0.
2016-10-26 09:28:14 +02:00
37d96f1dde
gnu: r-variantannotation: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.20.0.
[propagated-inputs]: Add r-biobase, r-biostrings, r-iranges,
r-rtracklayer, r-s4vectors, r-xvector.
2016-10-26 09:28:14 +02:00
5e48005fa9
gnu: r-edger: Update to 3.16.0.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.0.
[propagated-inputs]: Add r-locfit.
2016-10-26 09:28:14 +02:00
dece310a25
gnu: r-genomeinfodb: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.0.
2016-10-26 09:28:13 +02:00
7f354dafb1
gnu: r-iranges: Update to 2.8.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.0.
2016-10-26 09:28:13 +02:00
b120c5f3a2
gnu: r-s4vectors: Update to 0.12.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.0.
2016-10-26 09:28:13 +02:00
22c5d736af
gnu: r-dnacopy: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.48.0.
2016-10-26 09:28:12 +02:00
5c7b04e0c3
gnu: r-biocinstaller: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.24.0.
2016-10-26 09:28:12 +02:00
f0b297e17b
gnu: r-biocgenerics: Update to 0.20.0.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.20.0.
2016-10-26 09:28:11 +02:00
c9b5046a18
gnu: r-grohmm: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.8.0.
2016-10-26 09:28:11 +02:00
1265d3877b
gnu: r-systempiper: Update to 1.8.1.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.8.1.
2016-10-26 09:28:11 +02:00
b87b41a74d
gnu: r-shortread: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.0.
2016-10-26 09:28:10 +02:00
ae6899b683
gnu: r-gostats: Update to 2.40.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.40.0.
2016-10-26 09:28:10 +02:00
816599c1e7
gnu: r-category: Update to 2.40.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.40.0.
2016-10-26 09:28:10 +02:00
558d02c361
gnu: r-gseabase: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.36.0.
2016-10-26 09:28:09 +02:00
700c780dcf
gnu: r-rbgl: Update to 1.50.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.50.0.
2016-10-26 09:28:09 +02:00
55cd914c3d
gnu: r-annotationforge: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.0.
[propagated-inputs]: Add r-rcurl.
2016-10-26 09:28:09 +02:00
e1db8dd813
gnu: r-deseq2: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.0.
2016-10-26 09:28:08 +02:00
1e66e71921
gnu: r-genefilter: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.56.0.
2016-10-26 09:28:08 +02:00
6faa2a48f0
gnu: r-geneplotter: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.52.0.
2016-10-26 09:28:08 +02:00
9beba74f66
gnu: r-annotate: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.0.
2016-10-26 09:28:07 +02:00
557a4b8e61
gnu: Add r-kernsmooth.
...
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2016-10-26 09:28:07 +02:00
f9875807e8
gnu: emacs-emms-player-mpv: Update to 0.0.10.
...
* gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.10.
2016-10-26 09:28:07 +02:00
6c18c4f603
gnu: elfutils: Update to 0.167.
...
* gnu/packages/elf.scm (elfutils): Update to 0.167.
2016-10-25 22:11:59 -04:00
3de764f7a7
gnu: gtk+-2: Update to 2.24.31 [fixes CVE-2013-7447].
...
* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.31.
2016-10-25 16:33:13 -04:00
47a04fca99
gnu: mupdf: Fix CVE-2016-8674.
...
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf): Use it.
2016-10-25 12:50:50 -04:00
4b12fe5cab
gnu: coda: Remove bundled libraries.
...
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-25 14:56:37 +02:00
8ce84bf1f5
svg: Autoload Guile-RSVG and Guile-Cairo.
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Fixes compilation by 'guix pull' where Guile-{RSVG,Cairo} are missing.
Reported by Efraim Flashner.
* gnu/build/svg.scm: Use 'module-autoload!' rather than 'module-use!'.
2016-10-25 13:57:28 +02:00
e9a19bde40
gnu: linux-libre@4.1: Update to 4.1.35.
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* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.35. Remove
patch.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-24 22:53:18 -04:00
c4a667bfa5
gnu: Add missing module import to (gnu packages gl).
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This is a followup to commit f1267c872f
2016-10-24 22:45:38 -04:00
f1267c872f
gnu: mesa: Fix 'wayland-egl-symbols-check' on MIPS.
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* gnu/packages/patches/mesa-wayland-egl-symbols-check-mips.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa)[source]: Add patch when building on MIPS.
2016-10-24 22:28:32 -04:00
ffde82c9ec
system: grub: Use Guile-{RSVG,Cairo} instead of Inkscape + ImageMagick.
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Based on a suggestion by Andy Wingo at
<https://lists.gnu.org/archive/html/guix-devel/2015-08/msg00753.html >.
* gnu/build/svg.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/system/grub.scm (svg->png): Add #:width and #:height. Rewrite to
use (gnu build svg).
(resize-image): Remove.
(grub-background-image): Adjust accordingly.
2016-10-25 01:21:28 +02:00
19a65e7c8c
gnu: perl-eval-closure: Update to 0.14.
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* gnu/packages/perl.scm (perl-eval-closure): Update to 0.14.
2016-10-24 17:29:25 -04:00
d91025e3d0
gnu: Add coda.
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* gnu/packages/maths.scm (coda): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:14:52 +02:00
d3c4f3bb00
gnu: Add hdf-eos2.
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* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:05:20 +02:00
3b5783fcd9
gnu: Add guile-bytestructures
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* gnu/packages/guile.scm (guile-bytestructures): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 22:51:52 +02:00
8c00b83818
services: nginx: Virtual hosts are first-class configuration items.
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* gnu/services/web.scm (<nginx-vhost-configuration>): New record type.
(config-domain-strings): New procedure.
(config-index-strings): New procedure.
(default-nginx-vhost-config): New procedure.
(default-nginx-config): Add vhost support and temporary directories
(nginx-activation): Create temporary directories
(nginx-service): Add vhost-list key.
* doc/guix.texi (Web Services): Document 'nginx-vhost-configuration'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 22:50:40 +02:00
4691428059
gnu: twolame: Make the test suite compatible with Perl 5.24.
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* gnu/packages/audio.scm (twolame)[source]: Add snippet to fix test.
2016-10-24 16:19:25 -04:00
405be8dceb
gnu: efl: Update to 1.18.2.
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* gnu/packages/enlightenment.scm (efl): Update to 1.18.2.
2016-10-24 22:01:00 +03:00
c201b28bfa
gnu: red-eclipse: Update to 1.5.6.
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* gnu/packages/games.scm (red-eclipse): Update to 1.5.6.
[arguments]: Adjust phases.
2016-10-24 13:25:39 -04:00
9c798f9036
gnu: Add whois.
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* gnu/packages/networking.scm (whois): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-24 17:40:53 +01:00
bd1b1e0517
gnu: gnumeric: Use 'glib-or-gtk-build-system'.
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Reported by Pjotr Prins <pjotr.public12@thebird.nl>.
* gnu/packages/gnome.scm (gnumeric)[build-systems]: Switch to
GLIB-OR-GTK-BUILD-SYSTEM.
2016-10-24 19:19:34 +08:00
02cfea6627
gnu: musl: Fix CVE-2016-8859.
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* gnu/packages/patches/musl-CVE-2016-8859.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/musl.scm (musl)[source]: Use it.
2016-10-23 18:08:17 -04:00
8e3017cc65
gnu: windowmaker: Update to 0.95.7.
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* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.7.
2016-10-23 17:52:28 -04:00
0f6b6cb996
gnu: gajim: Update to 0.16.6.
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* gnu/packages/messaging.scm (gajim): Update to 0.16.6.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:40:50 -04:00
d6465efaa9
gnu: gajim: License is "version 3 only".
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* gnu/packages/messaging.scm (gajim)[license]: Change to GPL3.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:40:50 -04:00
2dfa90721d
gnu: weechat: Update to 1.6.
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* gnu/packages/irc.scm (weechat): Update to 1.6.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:10:22 -04:00
ef73acd30d
gnu: diffoscope: Disable failing test.
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* gnu/packages/package-management.scm (diffoscope)[arguments]: Add
'disable-failing-test' phase.
2016-10-23 17:05:09 -04:00
1bafad5661
gnu: audit: Use GnuTLS instead of OpenSSL.
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* gnu/packages/admin.scm (audit)[inputs]: Replace openssl with gnutls.
2016-10-23 16:38:21 -04:00
93cb98d481
gnu: icu4c: On MIPS, pass --with-data-packaging=archive to configure.
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* gnu/packages/icu4c.scm (icu4c)[arguments]: On MIPS, pass
"--with-data-packaging=archive" to configure.
2016-10-23 14:18:26 -04:00
ca0635b4ba
Merge branch 'master' into core-updates
2016-10-23 14:16:39 -04:00
903276d066
gnu: Add python-flask-sqlalchemy.
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* gnu/packages/python.scm (python-flask-sqlalchemy): New variable.
2016-10-23 19:41:11 +02:00
31288222d4
gnu: Add python-flask-basicauth.
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* gnu/packages/python.scm (python-flask-basicauth): New variable.
2016-10-23 19:41:10 +02:00
999d964d64
gnu: Add python-flask-restful.
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* gnu/packages/python.scm (python-flask-restful): New variable.
2016-10-23 19:31:39 +02:00
0990edfecb
gnu: Add python-aniso8601.
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* gnu/packages/python.scm (python-aniso8601): New variable.
2016-10-23 19:31:39 +02:00
04ce840a82
gnu: Add bluefish.
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* gnu/packages/gnome.scm (bluefish): New variable.
2016-10-23 19:26:30 +02:00
373e765ec3
gnu: openconnect: Update to 7.07.
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* gnu/packages/vpn.scm (openconnect): Update to 7.07.
2016-10-23 16:33:04 +02:00
bdc74f07c3
gnu: weex: Use ‘modify-phases’.
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* gnu/packages/ftp.scm (weex): Use the ‘modify-phases’ syntax.
2016-10-23 16:33:04 +02:00
5f5b57681c
gnu: Add guitarix-lv2.
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* gnu/packages/audio.scm (guitarix-lv2): New variable.
2016-10-23 15:47:35 +02:00
84d53724ba
gnu: Add mod-utilities.
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* gnu/packages/music.scm (mod-utilities): New variable.
2016-10-23 15:47:35 +02:00
3d4b1bb9a1
gnu: Add jalv-select.
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* gnu/packages/music.scm (jalv-select): New variable.
2016-10-23 15:47:35 +02:00
c2c9e74891
gnu: Add mod-host.
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* gnu/packages/music.scm (mod-host): New variable.
2016-10-23 15:47:35 +02:00
Hartmut Goebel