Commit Graph

1213 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice 68b49109a0
doc: Fix typo.
* doc/guix.texi (Bootloader Configuration): Fix ‘choosen’ typo.
2017-11-24 19:05:00 +01:00
Ludovic Courtès be10e4ae4a
doc: Update package count.
* doc/guix.texi (Limitations): Update package count.
2017-11-23 22:38:11 +01:00
Chris Marusich 77f921587c
doc: Split the "Substitutes" section into subsections.
* doc/guix.texi (Substitutes): Move information into sections, and create one
  new subsection regarding substitution failure.
  (Top): In the detailed listing, add entries for the new subsections.
  (Official Substitute Server): Move info about hydra here.  Add information
  that explains when substitutes are enabled by default.
  (Substitute Server Authorization): Move information about how to enable or
  disable substitutes here.
  (Substitute Authentication): Move information about how Guix authenticates
  substitutes here.
  (Proxy Settings): Move information about how to download substitutes via
  proxy here.
  (Substitution Failure): New section.  Add information about how Guix handles
  substitution failure.  Be extra clear about behavior concerning --fallback.
  (On Trusting Binaries): Move information about trusting binaries here.
  (Invoking guix-daemon): Remove an incorrect statement about when substitutes
  are enabled by default.
  (Common Build Options): Add cross-references for the --fallback option.

Co-authored-by: George Clemmer <myglc2@gmail.com>
2017-11-21 20:15:39 -08:00
Ludovic Courtès bd7e136d29
Add semicolon in commands that set GUIX_PROFILE.
Fixes <https://bugs.gnu.org/28223>.
Reported by Rosebud Uplink <Uplink.Introversion@outlook.com>.

* doc/guix.texi (Binary Installation): Add missing semicolon after
'GUIX_PROFILE=' line.
(Invoking guix package): Likewise.
* gnu/system.scm (operating-system-etc-service)[profile]: Likewise.
* guix/build/profiles.scm (build-etc/profile): Likewise.
2017-11-20 18:43:10 +01:00
Marco van Hulten 45eee2dd62
doc: Write "file system" instead of "partition" as appopriate.
* doc/guix.texi (Preparing for Installation): Write "file system" instead
of "partition" as appopriate.
2017-11-17 23:04:52 +01:00
Ludovic Courtès a0fea77dbb
services: guix: Remove dependency on 'lsof'.
This is a followup to b8f59cdc20e9d83ce63523ef917e95fcee07f134:
'list-runtime-roots' no longer depends on 'lsof'.

* gnu/services/base.scm (<guix-configuration>)[lsof]: Remove.
(guix-shepherd-service): Adjust accordingly.
* doc/guix.texi (Base Services): Adjust accordingly.
* gnu/system.scm (%base-packages): Remove LSOF.
2017-11-13 11:36:28 +01:00
Ludovic Courtès 6a98b9f34e
doc: Better explain GC roots.
Fixes <https://bugs.gnu.org/24194>.
Reported by J. Eppler <j.eppler@openmailbox.org>.

* doc/guix.texi (Invoking guix-daemon): Add index entries for GC roots.
Add xref to "Invoking guix gc".
(Invoking guix gc): Add the string "GC roots"; mention /var/guix/gcroots.
(Additional Build Options): Add index entries.  Better explain --root.
(Invoking guix environment): Add xref to "Invoking guix gc".
2017-11-12 22:42:17 +01:00
Ricardo Wurmus 308c08d371
doc: Move paragraph about signature verification to the top.
* doc/contributing.texi (Submitting Patches): Remind contributors to verify
cryptographic signatures at the very beginning.
2017-11-08 17:19:45 +01:00
nee b6d2930d1f
services: Add murmur.
* gnu/services/telephony.scm: New file.
* gnu/local.mk: Add it.
* doc/guix.texi (Telephony Services): New node.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-05 15:21:53 +01:00
Leo Famulari fff236aa03
doc: Fix typo in documentation of 'guix graph'.
* doc/guix.texi (Invoking guix graph): Fix typo.
2017-11-01 17:14:09 -04:00
Leo Famulari 9c43f432eb
doc: Document the installation of Go source code.
* doc/guix.texi (Build Systems): Document '#:install-source?' for the Go
build system.
2017-10-26 12:14:34 -04:00
Ludovic Courtès bf7dfb1f07
challenge: Display an overall summary.
* guix/scripts/challenge.scm (summarize-report-list): New procedure.
(guix-challenge): Use it.
* doc/guix.texi (Invoking guix challenge): Adjust command output in
example.
2017-10-25 22:25:19 -07:00
Ludovic Courtès d298c815e6
gexp: Add 'directory-union'.
* gnu/services.scm (directory-union): Move to...
* guix/gexp.scm (directory-union): ... here.  New procedure.
* doc/guix.texi (G-Expressions): Document it.
2017-10-22 22:09:00 -07:00
Ludovic Courtès dedb512f8f
gexp: Add 'file-union'.
* gnu/services.scm (file-union): Move to...
* guix/gexp.scm (file-union): ... here.  New procedure.
* doc/guix.texi (G-Expressions): Document it.
2017-10-22 22:09:00 -07:00
Maxim Cournoyer 6e644cfdb3
services: base: Add file->udev-rule function.
This function allows passing a file-like object to the udev service.

* gnu/services/base.scm (file->udev-rule): New function.
* doc/guix.texi (Base Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 22:09:00 -07:00
Hartmut Goebel ed26b3a807
doc: Clarify description of etc-service-type.
* doc/guix.texi (Service Reference): Update 'etc-service-type'
  documentation.
2017-10-22 12:47:29 +02:00
Tobias Geerinckx-Rice 5713bbf157
Use HTTPS for bioconductor.org.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
Ricardo Wurmus e0c1d080b5
doc: Add an example to the documentation of the udev-service.
* doc/guix.texi (Base Services): Update 'udev-service' documentation.
2017-10-13 08:39:16 +02:00
Leo Famulari 91525b486c
build: Add the Go build system.
* guix/build-system/go.scm,
guix/build/go-build-system.scm: New files.
* Makefile.am (MODULES): Add new files.
* doc/guix.texi (Build Systems): Document the go-build-system.
2017-10-12 21:22:40 -04:00
Ludovic Courtès 50fcf37c13
doc: Give an example with a FAT UUID.
* gnu/system/examples/lightweight-desktop.tmpl <file-systems>: Add a
UUID for the /boot/efi partition.
* doc/guix.texi (Using the Configuration System): Mention it.
2017-10-11 11:12:33 +02:00
Oleg Pykhalov cca6941fee
pull: Add GUIX_PULL_URL environment variable.
* guix/scripts/pull.scm (%repository-url): Add GUIX_PULL_URL environment
  variable.
* doc/guix.texi (Invoking guix pull): Mention GUIX_PULL_URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-07 23:01:52 +02:00
Christopher Baines 5266ff719e
services: Add MongoDB.
* gnu/services/databases.scm (%default-mongodb-configuration-file,
  %mongodb-accounts, mongodb-service-type): New variables.
  (<mongodb-configuration>): New record type.
  (mongodb-activation, mongodb-shepherd-service): New procedures.
* gnu/tests/databases.scm (%test-mongodb): New variable.
* doc/guix.texi (Database Services): Add MongoDB documentation.
2017-10-06 21:24:30 +01:00
Julien Lepiller f403d7abdf
guix: ant-build-system: Add #:test-include and #:test-exclude arguments.
* guix/build-system/ant.scm: Add #:test-include and #:test-exclude
arguments.
* guix/build/ant-build-system.scm: Generate test list from arguments.
* doc/guix.texi (Build Systems): Document it.
2017-10-03 21:38:23 +02:00
Julien Lepiller 8df1faa047
guix: ant-build-system: Add main-class support.
* guix/build-system/ant.scm: New #:main-class argument
* guix/build/ant-build-system.scm: Generate a manifest file with
additional properties.
* doc/guix.texi (Build Systems): Document it.
2017-10-03 21:37:47 +02:00
Oleg Pykhalov 032a2760ee
gnu: services: Add cgit.
* gnu/services/version-control.scm
(<cgit-configuration-file>, <cgit-configuration>): New record types.
(cgit-configuration-robots-string, cgit-activation,
cgit-configuration-nginx-config): New procedures.
(%cgit-configuration-nginx, cgit-service-type): New variables.
* gnu/tests/version-control.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (Version Control): Document the cgit service.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:07:54 +02:00
Ludovic Courtès e797e94bf5
doc: Explain why synopses/descriptions must be literal strings.
Suggested by Dave Love <fx@gnu.org>.

* doc/guix.texi (Synopses and Descriptions): Recommend literal strings.
2017-10-03 17:07:54 +02:00
Thomas Danckaert 350cc3a270
doc: Fix rottlog configuration sample code.
* doc/guix.texi (Log Rotation): Correct code for the default mcron-service.
2017-09-30 18:11:12 +02:00
Oleg Pykhalov 4d14808af4
services: web: Add try-files for the nginx-service-type.
* gnu/services/web.scm (<nginx-server-configuration>): Add
  nginx-server-configuration-try-files.
(emit-nginx-server-config): Use it.
* doc/guix.texi (Web Services): Document it.
2017-09-28 20:37:40 +02:00
Ricardo Wurmus fb1db38547
import: Add JSON importer.
* doc/guix.texi (Invoking guix import): Document it.
* guix/scripts/import/json.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/scripts/import.scm (importers): Add json importer.
2017-09-28 13:10:11 +02:00
Jan Nieuwenhuizen 66bc1d2aaf
cuirass: Add gnu-system build spec.
* build-aux/hydra/gnu-system.scm (hydra-jobs): Support subset "hello".
* build-aux/cuirass/gnu-system.scm: New file.
* doc/guix.texi (Continuous Integration): Update example spec.
2017-09-27 22:19:28 +02:00
Jan Nieuwenhuizen 326f6ef10f
services: cuirass: Add host option.
* gnu/services/cuirass.scm (<cuirass-configuration>): Add host option.
(cuirass-shepherd-service): Pass host option.
* doc/guix.texi (Continuous Integration): Document it.
2017-09-26 18:15:41 +02:00
Oleg Pykhalov 9db7e9be59
gnu: Add rsync service.
* doc/guix.texi (Networking Services): Add rsync service documentation.
* gnu/services/rsync.scm (<rsync-configuration>): New file.
* gnu/tests/rsync.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new files.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-09-23 21:07:27 +01:00
Ludovic Courtès 94d2a25091
services: network-manager: Add support for VPN plug-ins.
* gnu/services.scm (directory-union): Export.
* gnu/services/networking.scm (<network-manager-configuration>)[vpn-plugins]:
New field.
(vpn-plugin-directory, network-manager-environment): New procedure.
(network-manager-shepherd-service): Pass #:environment-variables to
'make-forkexec-constructor'.
(network-manager-service-type): Add SESSION-ENVIRONMENT-SERVICE-TYPE
extension.
* doc/guix.texi (Networking Services): Document it.
2017-09-22 00:05:08 +02:00
Ludovic Courtès 6ab63268e4
doc: Mention 'mkfs.fat' for the ESP.
Suggested by Hartmut Goebel <h.goebel@crazy-compilers.com>.

* doc/guix.texi (Preparing for Installation): Mention 'mkfs.fat'.
2017-09-19 23:58:24 +02:00
Jan Nieuwenhuizen 4619b59cb4
doc: Add a note about closing bug threads.
* doc/contributing.texi (Submitting Patches): Add a note about closing bug
threads by mailing to NNN-done@debbugs.gnu.org.

Suggested-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2017-09-19 17:17:42 +02:00
Jan Nieuwenhuizen 5a183a1e2b
doc: Add "Sending a Patch Series" subsection.
Searching for `git send-email' took you to the end of `Submitting Patches'
section which said

   You may use your email client or the ‘git send-email’ command.

without further warning or remark.

* doc/contributing.texi (Sending a Patch Series): Move information about
debbugs bug 15361 to subsection.  Add git-send-email index entries.
(Submitting Patches): Reference it.
2017-09-19 17:17:34 +02:00
Peter Mikkelsen 07c101e221
build-system: Add 'meson-build-system'.
* Makefile.am (MODULES): Add 'guix/build-system/meson.scm' and
'guix/build/meson-build-system.scm'.
* guix/build-system/meson.scm: New file.
* guix/build/meson-build-system.scm: New file.
* doc/guix.texi (Build Systems): Add 'meson-build-system'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-16 18:07:00 +02:00
Ludovic Courtès 0649321d91
guix system: Add 'search' command.
* guix/scripts/system.scm (resolve-subcommand): New procedure.
(process-command): Handle 'search'.
(guix-system): Likewise.
(show-help): Augment.
* guix/scripts/system/search.scm: New file.
* po/guix/POTFILES.in: Add it.
* Makefile.am (MODULES): Add it.
* guix/ui.scm (%text-width): Export.
* doc/guix.texi (Invoking guix system): Document it.
(Service Types and Services): Mention 'guix system search'.
* tests/guix-system.sh: Test it.
2017-09-16 17:47:46 +02:00
Ludovic Courtès b714395a39
services: Add a description and location for each service type.
* gnu/services.scm (<service-type>)[description, location]: New field.
* doc/guix.texi (Service Types and Services): Document 'description'.
2017-09-16 17:47:46 +02:00
Jan Nieuwenhuizen 1c05aab473
gnu: cuirrass: Default port to 8081.
* gnu/services/cuirass.scm (<cuirass-configuration>): Default port to 8081.
  Fixes conflict with guix-publish default.
* doc/guix.texi (Continuous Integration): Update.
2017-09-13 18:33:46 +02:00
Jan Nieuwenhuizen 9bb98bcf7b
doc: Fix typo in cuirrass config example.
* doc/guix.texi (Continuous Integration): Add missing quote in example spec.
2017-09-13 18:30:00 +02:00
Ludovic Courtès 960c40de21
doc: Use Screen and OpenSSH in the bare-bones example.
* gnu/system/examples/bare-bones.tmpl (packages): Remove TCPDUMP; add
SCREEN and OPENSSH.
* doc/guix.texi (Using the Configuration System): Adjust explanation
accordingly.
2017-09-12 23:56:34 +02:00
Ludovic Courtès a9468b422b
substitute: Download from unauthorized sources that provide the right content.
This allows substitutes to be downloaded from unauthorized servers, as
long as they advertise the same hash and references as one of the
authorized servers.

* guix/scripts/substitute.scm (assert-valid-narinfo): Remove.
(valid-narinfo?): Add #:verbose?.  Handle each case of
'signature-case'.
(equivalent-narinfo?): New procedure.
(lookup-narinfos/diverse): Add 'authorized?' parameter and honor it.
[select-hit]: New procedure.
(lookup-narinfo): Add 'authorized?' parameter and pass it.
(process-query): Adjust callers accordingly.
(process-substitution): Remove call to 'assert-valid-narinfo'.  Check
whether 'lookup-narinfo' returns true and call 'leave' if not.
* tests/substitute.scm (%main-substitute-directory)
(%alternate-substitute-directory): New variables.
(call-with-narinfo): Make 'narinfo-directory' a parameter.  Call
'mkdir-p' to create it.  Change unwind handler to check whether
CACHE-DIRECTORY exists before deleting it.
(with-narinfo*): New macro.
("substitute, no signature")
("substitute, invalid hash")
("substitute, unauthorized key"): Change expected error message to "no
valid substitute".
("substitute, unauthorized narinfo comes first")
("substitute, unsigned narinfo comes first")
("substitute, first narinfo is unsigned and has wrong hash")
("substitute, first narinfo is unsigned and has wrong refs")
("substitute, unsigned narinfo comes first")
("substitute, two invalid narinfos"): New tests.
* doc/guix.texi (Substitutes): Explain the new behavior.
2017-09-11 11:10:21 +02:00
Christopher Baines c2a59a92bb
doc: Replace upstream-list with upstream-blocks.
This fixes the documentation to match the implementation.

* doc/guix.texi (Web Services): Replace 'upstream-list' with
  'upstream-blocks'.
2017-09-10 12:00:03 +01:00
Oleg Pykhalov fb1cba687e
doc: Replace server-list with server-blocks.
* doc/guix.texi (Web Services): Replace 'server-list' with 'server-blocks'.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-09-10 11:59:59 +01:00
Ludovic Courtès acc2ab65bc
doc: Update elogind URL.
* doc/guix.texi (Desktop Services): Update elogind URL.
2017-09-08 00:11:20 +02:00
Ludovic Courtès fb25508856
size: Default to '--sort=self'.
* guix/scripts/size.scm (%default-options): Change default value for
'profile<?.
* doc/guix.texi (Invoking guix size): Adjust accordingly.
2017-09-07 13:57:42 +02:00
Tobias Geerinckx-Rice 352a5b639b
services: web: Fix nginx-service-type's ‘file’ procedure.
* gnu/services/web.scm (nginx-activation, nginx-shepherd-service): Replace
references to non-existent ‘config-file’ with ‘file’.
* doc/guix.texi (Web Services): Likewise.
2017-09-05 20:57:14 +02:00
Tobias Geerinckx-Rice 4695472f8a
doc: Fix typo in copyright header.
* doc/guix.texi: Move stray ‘@*’ to where it belongs.
2017-09-05 20:57:13 +02:00
Maxim Cournoyer b9f67d6dda
services: Add auto-enable? parameter to the bluetooth-service.
* gnu/services/desktop.scm (bluetooth-configuration): New record.
(bluetooth-shepherd-service): Use it.
(bluetooth-directory): New method.
(bluetooth-service-type): Use it to extend the etc-service-type service.
(bluetooth-service): Add `auto-enable?' parameter.
* doc/guix.texi (Desktop Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-04 15:41:24 +02:00