be4f8391a4
gnu: privoxy: Update to 3.0.28.
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* gnu/packages/tor.scm (privoxy): Update to 3.0.28.
2019-01-08 04:21:52 +01:00
efff32452a
gexp: 'gexp->script' does not emit load-path expression when unnecessary.
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This removes two elements from %LOAD-PATH and %LOAD-COMPILED-PATH of the
'guix' command and thus further reduces the number of 'stat' calls it
makes.
* guix/gexp.scm (load-path-expression): Return #f when MODULES and
EXTENSIONS are both empty.
(gexp->script): Don't emit anything when SET-LOAD-PATH is #f.
2019-01-07 23:50:56 +01:00
49c35bbb71
self: Move all modules into a single directory.
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This halves the number of elements in %LOAD-PATH and %LOAD-COMPILED-PATH
and halves the number of 'stat' calls as reported by:
env -i $(type -P guix) build -e '(@ (gnu packages base) coreutils)' -nd
* guix/self.scm (node-source+compiled, guile-module-union): New
procedures.
(guix-command): Remove 'compiled-modules' parameter. Remove
'source-directories' and 'object-directories' variables and add
'module-directory'. Change command so that it adds nothing but
MODULE-DIRECTORY to %LOAD-PATH and %LOAD-COMPILED-PATH.
(whole-package): Remove #:compiled-modules. Assume MODULES contains
'share/guile/site' and 'lib/guile' and adjust code accordingly.
(compiled-guix): When PULL-VERSION is 1, use 'node-source+compiled'
only. Remove #:compiled-modules argument to 'whole-package'.
* guix/channels.scm (whole-package-for-legacy): Add 'module+compiled'
and pass it to 'whole-package'.
2019-01-07 23:50:56 +01:00
3c85058c0e
gnu: libnet: Update to 1.2-rc3.
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* gnu/packages/networking.scm (libnet): Update to 1.2-rc3.
[source]: Use git-fetch.
2019-01-07 22:07:01 +01:00
f31ce9ecf1
import: opam: Parse comments.
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* guix/import/opam.scm: Add comment support in parser.
2019-01-07 22:05:51 +01:00
8737666a99
gnu: ocaml-graph: Add upstream-name.
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* gnu/packages/ocaml.scm (ocaml-graph)[properties]: Add upstream-name.
2019-01-07 22:05:47 +01:00
755e6d4a0a
import: opam: Add updater.
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* guix/import/opam.scm (%opam-updater): New variable.
2019-01-07 22:05:45 +01:00
6090b0beb0
import: opam: Add recursive option.
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* guix/script/import/opam.scm: Add recursive option.
* guix/import/opam.scm (opam->guix-package): return two values.
(opam-recursive-import): New variable.
2019-01-07 22:05:43 +01:00
33af92dd99
gnu: Move coq packages from ocaml to coq.
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* gnu/packages/ocaml.scm (coq, proof-general, coq-flocq, coq-gappa, coq-mathcomp)
(coq-coquelicot, coq-bignums, coq-interval): Move from here...
* gnu/packages/coq.scm: ... to here. New file.
2019-01-07 22:05:37 +01:00
912f0541a3
gnu: emacs-guix: Update to 0.5.1.1.
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* gnu/packages/emacs.scm (emacs-guix): Update to 0.5.1.1.
2019-01-07 22:52:46 +03:00
40c7476af8
gnu: containerd: Update synopsis.
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* gnu/packages/docker.scm (containerd)[synopsis]: Modify.
2019-01-07 19:13:04 +01:00
54891e850a
gnu: containerd: Enable tests.
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* gnu/packages/docker.scm (containerd)[arguments]: Remove #:tests?.
2019-01-07 19:12:14 +01:00
1f1e338ad4
gnu: Add missing use-module clause.
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This is a follow-up to 4e5b8f7215
2019-01-07 18:45:23 +01:00
d53b23176f
gnu: Add r-corpcor.
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* gnu/packages/cran.scm (r-corpcor): New variable.
2019-01-07 18:44:04 +01:00
e3bb076678
gnu: Add r-ddrtree.
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* gnu/packages/cran.scm (r-ddrtree): New variable.
2019-01-07 18:44:04 +01:00
9f33d76c33
gnu: Add r-qlcmatrix.
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* gnu/packages/cran.scm (r-qlcmatrix): New variable.
2019-01-07 18:44:04 +01:00
58bc8857fb
gnu: Add r-combinat.
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* gnu/packages/cran.scm (r-combinat): New variable.
2019-01-07 18:44:04 +01:00
13f5837b4c
gnu: Add r-densityclust.
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* gnu/packages/cran.scm (r-densityclust): New variable.
2019-01-07 18:44:04 +01:00
b614009e6a
gnu: Add r-sparsesvd.
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* gnu/packages/cran.scm (r-sparsesvd): New variable.
2019-01-07 18:44:04 +01:00
fbebccf7f6
gnu: Add r-docopt.
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* gnu/packages/cran.scm (r-docopt): New variable.
2019-01-07 18:44:04 +01:00
45b469a472
gnu: Add r-rvcheck.
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* gnu/packages/cran.scm (r-rvcheck): New variable.
2019-01-07 18:44:04 +01:00
61d7334906
gnu: Add r-tidytree.
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* gnu/packages/cran.scm (r-tidytree): New variable.
2019-01-07 18:44:04 +01:00
a6e4413d64
gnu: Add r-colorramps.
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* gnu/packages/cran.scm (r-colorramps): New variable.
2019-01-07 18:44:04 +01:00
e37935e457
gnu: Add r-wordcloud.
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* gnu/packages/cran.scm (r-wordcloud): New variable.
2019-01-07 18:44:04 +01:00
f3949fecb3
gnu: Add r-waveslim.
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* gnu/packages/cran.scm (r-waveslim): New variable.
2019-01-07 18:44:04 +01:00
db084d79ea
gnu: Add r-tiff.
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* gnu/packages/cran.scm (r-tiff): New variable.
2019-01-07 18:44:04 +01:00
44b0c5b5b1
gnu: Add r-fftwtools.
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* gnu/packages/cran.scm (r-fftwtools): New variable.
2019-01-07 18:44:03 +01:00
71601a5d92
gnu: Add r-softimpute.
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* gnu/packages/cran.scm (r-softimpute): New variable.
2019-01-07 18:44:03 +01:00
03a3ec5e18
gnu: Add r-adgoftest.
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* gnu/packages/cran.scm (r-adgoftest): New variable.
2019-01-07 18:44:03 +01:00
a50abb3614
gnu: Add r-gsl.
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* gnu/packages/cran.scm (r-gsl): New variable.
2019-01-07 18:44:03 +01:00
ced51a204e
gnu: Add r-stabledist.
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* gnu/packages/cran.scm (r-stabledist): New variable.
2019-01-07 18:44:03 +01:00
dcd1aa2e64
gnu: perl-lingua-translit: Update to 0.28.
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* gnu/packages/perl.scm (perl-lingua-translit): Update to 0.28.
2019-01-07 19:42:41 +02:00
4e5b8f7215
gnu: Add containerd.
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* gnu/packages/docker.scm (containerd): New variable.
2019-01-07 16:41:17 +01:00
7f2d67c826
gnu: Add dummy linker for arm-elf.
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* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for arm-elf.
2019-01-07 16:39:35 +01:00
2a2760a08f
gnu: Move R packages from geo.scm to cran.scm.
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* gnu/packages/geo.scm (r-maps, r-mapproj, r-rgooglemaps, r-geosphere,
r-ggmap): Move from here...
* gnu/packages/cran.scm: ...to here.
2019-01-07 15:55:06 +01:00
576e74eee8
gnu: emacs-ess: Move to (gnu packages statistics).
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* gnu/packages/emacs.scm (emacs-ess): Move from here...
* gnu/packages/statistics.scm (emacs-ess): ...to here.
2019-01-07 15:55:06 +01:00
61f2587db9
gnu: python-rpy2: Move to (gnu packages statistics).
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* gnu/packages/python.scm (python-rpy2): Move from here...
* gnu/packages/statistics.scm (python-rpy2): ...to here.
2019-01-07 15:55:06 +01:00
e0d3f4bf1a
gnu: Remove reference to (gnu packages statistics).
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* gnu/packages/web.scm: Remove obsolete use-module clause.
2019-01-07 15:55:06 +01:00
d9bec9a87b
gnu: r-rmysql: Move from databases.scm to cran.scm
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* gnu/packages/databases.scm (r-rmysql): Move from here...
* gnu/packages/cran.scm (r-rmysql): ...to here.
2019-01-07 15:55:06 +01:00
41a010875b
gnu: biber: Update to 2.12.
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* gnu/packages/tex.scm (biber): Update to 2.12.
[source]: Use 'git-fetch'. Add patch.
[inputs]: Add perl-file-slurper. Remove perl-file-slurp.
* gnu/packages/patches/biber-fix-encoding-write.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-01-07 15:40:58 +01:00
60a166c629
gnu: r-feather: Move from serialization.scm to cran.scm.
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* gnu/packages/serialization.scm (r-feather): Move from here...
* gnu/packages/cran.scm (r-feather): ...to here.
2019-01-07 15:21:09 +01:00
67eebb19b7
gnu: Fix top-level circular references between emacs.scm and llvm.scm.
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Previously, loading either of these two modules could fail somewhat
non-deterministically because each top-level was referencing a variable
defined by the other module's top-level.
* gnu/packages/emacs.scm (package-elisp-from-package): Move to...
* gnu/packages/llvm.scm (package-elisp-from-package): Here. Keep
private.
2019-01-07 15:09:30 +01:00
37e461e6f4
gnu: perl-file-slurper: Update to 0.012.
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* gnu/packages/perl.scm (perl-file-slurper): Update to 0.012.
[native-inputs]: Add perl-test-warnings.
2019-01-07 15:08:08 +01:00
92ce188331
gnu: Move R packages from web.scm to cran.scm.
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* gnu/packages/web.scm (r-httpuv, r-jsonlite, r-servr, r-htmltools,
r-htmlwidgets, r-htmltable, r-curl, r-hwriter, r-rjson, r-shiny,
r-shinydashboard, r-shinyfiles, r-crosstalk, r-rook, r-miniui): Move these
from here...
* gnu/packages/cran.scm: ...to here.
2019-01-07 15:05:27 +01:00
3a3d4d9d54
Revert "gnu: Use package-elisp-from-package for clangs emacs lisp files"
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This reverts commit 5bc2e14add
2019-01-07 14:58:40 +01:00
6fd2ed23ac
gnu: mantis: Limit to x86_64-linux.
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* gnu/packages/bioinformatics.scm (mantis)[supported-systems]: New field.
2019-01-07 15:47:34 +02:00
e97b23e4bd
gnu: package-elisp-from-package: Clarify docstring.
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* gnu/packages/emacs.scm (package-elisp-from-package)[docstring]: Clarify.
2019-01-07 14:45:21 +01:00
5bc2e14add
gnu: Use package-elisp-from-package for clangs emacs lisp files
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Use package-elisp-from-package for emacs-clang-format and emacs-clang-rename.
Also remove package-from-clang-elisp-file as it is not needed anymore.
* gnu/packages/llvm.scm (emacs-clang-format): Use package-elisp-from-package
* gnu/packages/llvm.scm (emacs-clang-rename): Use package-elisp-from-package
* gnu/packages/llvm.scm (package-from-clang-elisp-file): Remove function
2019-01-07 14:45:21 +01:00
7d5856bd45
gnu: Add package-elisp-from-package
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Add a function to generate package definitions that packages single elisp
files from other packages.
* gnu/packages/emacs.scm (package-elisp-from-package): New function
2019-01-07 14:45:21 +01:00
915c6bf60c
gnu: python2-fastlmm: Move to machine-learning.scm.
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This is a step towards removing OCaml modules from the closure
of (gnu packages python).
* gnu/packages/python.scm (python2-fastlmm): Move to...
* gnu/packages/machine-learning.scm (python2-fastlmm): ... here.
2019-01-07 14:41:01 +01:00
Tobias Geerinckx-Rice