Ludovic Courtès
7394e264fc
gnu: perf: Work around GCC bug.
...
Works around <https://bugs.gnu.org/31708 >.
* gnu/packages/patches/perf-gcc-ice.patch: New patch.
* gnu/packages/linux.scm (perf)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-06-04 14:03:54 +02:00
Ludovic Courtès
831f07a009
gnu: signing-party: Update to commit d6f2296.
...
* gnu/packages/gnupg.scm (signing-party): Update to commit d6f2296.
[home-page]: Change to salsa.debian.org.
[source]: Use git-fetch.
[arguments]: Remove 'change-directory' phase. In 'configure' phase,
modify 'gpgwrap/Makefile' instead of 'gpgwrap/src/Makefile'.
2018-06-04 14:03:54 +02:00
Ricardo Wurmus
32da38d572
Merge branch 'master' into core-updates
2018-06-04 11:25:48 +02:00
Efraim Flashner
c0e7a52996
gnu: python-pyqt: Update to 5.10.1.
...
* gnu/packages/qt.scm (python-pyqt): Update to 5.10.1.
[inputs]: Remove qtwebkit.
[arguments]: Add custom phase to fix compilation with Qt 5.11.
2018-06-04 11:06:00 +03:00
Efraim Flashner
9cdd868450
gnu: python-sip: Update to 4.19.8.
...
* gnu/packages/qt.scm (python-sip): Update to 4.19.8.
2018-06-04 11:05:57 +03:00
Efraim Flashner
d53e5b366d
gnu: gcompris-qt: Update to 0.91.
...
* gnu/packages/education.scm (gcompris-qt): Update to 0.91.
[arguments]: Add custom phase to fix building with Qt 5.11.
2018-06-03 19:11:27 +03:00
Efraim Flashner
68ddfb2e8d
gnu: quassel: Fix building with Qt 5.11.
...
* gnu/packages/irc.scm (quassel)[sources]: Add patch. Return #t from
snippet.
* gnu/packages/patches/quassel-qt-5.11.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-06-03 15:49:50 +03:00
Rutger Helling
4edc431b0f
gnu: w3m: Enable image support.
...
* gnu/packages/w3m.scm (w3m)[inputs]: Add gdk-pixbuf, libx11.
2018-06-03 13:01:41 +02:00
Efraim Flashner
6f5c67d725
gnu: keepassxc: Fix compilation with Qt 5.11.
...
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add custom
'patch-sources phase to include missing headers.
2018-06-03 12:46:11 +03:00
Mark H Weaver
0c0431f9ce
Merge branch 'master' into core-updates
2018-06-03 03:36:47 -04:00
Mark H Weaver
2c790226d2
gnu: rust: Fix build for armhf and mips64el.
...
This is a followup to commit 514026d7de
.
* gnu/packages/rust.scm (nix-system->gnu-triplet-for-rust): New variable.
(rust-bootstrap, mrustc, rust-1.23): Use 'nix-system->gnu-triplet-for-rust'
instead of 'nix-system->gnu-triplet'.
2018-06-03 03:36:13 -04:00
Efraim Flashner
0ec430f795
gnu: xxd: Remove all inherited inputs.
...
* gnu/packages/vim.scm (xxd)[inputs]: New field, don't inherit from vim.
2018-06-02 23:34:56 +03:00
Efraim Flashner
aa75dadab8
gnu: vim: Update to 8.1.0026.
...
* gnu/packages/vim.scm (vim): Update to 8.1.0026.
[arguments]: Update substitute list on custom 'patch-config-files phase.
[inputs]: Remove inetutils.
2018-06-02 23:34:37 +03:00
Efraim Flashner
2d4fdb707e
gnu: xxd: Return true from all phases.
...
* gnu/packages/vim.scm (xxd)[arguments]: Return '#t' from custom 'chdir
phase.
2018-06-02 22:34:23 +03:00
Pierre Neidhardt
15dcd292df
gnu: Add emacs-fish-completion.
...
* gnu/packages/emacs.scm (emacs-fish-completion): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:52 +02:00
Pierre Neidhardt
e374010923
gnu: Add emacs-evil-org.
...
* gnu/packages/emacs.scm (emacs-evil-org): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Pierre Neidhardt
ac85107c9f
gnu: Add emacs-evil-multiedit.
...
* gnu/packages/emacs.scm (emacs-evil-multiedit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Pierre Neidhardt
e1e09bcb43
gnu: Add emacs-evil-mu4e.
...
* gnu/packages/emacs.scm (emacs-evil-mu4e): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Pierre Neidhardt
c6c1f0bf41
gnu: Add emacs-evil-magit.
...
* gnu/packages/emacs.scm (emacs-evil-magit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Pierre Neidhardt
22deb03439
gnu: Add emacs-evil-ediff.
...
* gnu/packages/emacs.scm (emacs-evil-ediff): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Ludovic Courtès
8292f5a9c5
self: Do not build (guix man-db).
...
* guix/self.scm (specification->package): Remove "guile-gdbm-ffi" and
"guile2.0-gdbm-ffi".
(compiled-guix)[guile-gdbm-ffi]: Remove.
[dependencies]: Remove it.
[*core-modules*]: Add "guix/man-db.scm" via #:extra-files.
[*extra-modules*]: Exclude "guix/man-db.scm".
2018-06-02 16:02:51 +02:00
Ludovic Courtès
f52ef55e2b
gnu: guile-json: Update to 1.0.1.
...
* gnu/packages/guile.scm (guile-json): Update to 1.0.1.
[source]: Switch to github.com. Adjust 'snippet' to modify
'configure.ac' and 'Makefile.am'.
[native-inputs]: Add AUTOCONF and AUTOMAKE.
2018-06-02 15:29:38 +02:00
Ricardo Wurmus
e0f8970357
Merge branch 'master' into core-updates
2018-06-02 13:44:43 +02:00
Ricardo Wurmus
92963798a6
gnu: r-scater: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.0.
[propagated-inputs]: Add r-delayedarray ad r-delayedmatrixstats; remove
r-matrixstats and r-biomart.
2018-06-02 13:42:05 +02:00
Ricardo Wurmus
41f17554d8
import: cran: Update to Bioconductor 3.7.
...
* guix/import/cran.scm (%bioconductor-version): Update to 3.7.
2018-06-02 13:39:13 +02:00
Ricardo Wurmus
83402242ea
gnu: r-mvtnorm: Update to 1.0-8.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-8.
2018-06-02 13:39:13 +02:00
Ricardo Wurmus
7799a01ef1
gnu: r-rgraphviz: Update to 2.24.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.24.0.
2018-06-02 13:39:13 +02:00
Ricardo Wurmus
d7e3299987
gnu: r-scran: Update to 1.8.2.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.2.
[propagated-inputs]: Remove r-zoo; add r-delayedmatrixstats and r-delayedarray.
2018-06-02 13:39:13 +02:00
Ricardo Wurmus
8ec56b2956
gnu: r-delayedmatrixstats: Update to 1.2.0.
...
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.2.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
d99e0938fa
gnu: r-singlecellexperiment: Update to 1.2.0.
...
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.2.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
fd613234b7
gnu: r-beachmat: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.2.1.
[inputs]: Add zlib.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
e9c417361e
gnu: r-rhdf5lib: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1.
[arguments]: Adjust substitutions.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
0840352835
gnu: r-hdf5array: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
5cd725d002
gnu: r-qvalue: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.12.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
c6c619c179
gnu: r-hitc: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.24.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
4dedecbe70
gnu: r-fithic: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.6.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
8db6256f4b
gnu: r-sushi: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.18.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
2d3c172b72
gnu: r-gwascat: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.12.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
fecbbac286
gnu: r-gviz: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.24.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
6929b97583
gnu: r-gqtlstats: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.12.0.
[propagated-inputs]: Add r-homo-sapiens; remove r-ldblock.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
45c29a6e5c
gnu: r-ldblock: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.10.0.
[propagated-inputs]: Add r-biocgenerics.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
9b0b108ed9
gnu: r-erma: Update to 0.12.0.
...
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.12.0.
[propagated-inputs]: Remove r-foreach; add r-biocparallel, r-genomeinfodb, and
r-iranges.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
d26f95d079
gnu: r-snpstats: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.30.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
dcd1f0236c
gnu: r-gqtlbase: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.12.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
e214a6e6ff
gnu: r-ggbio: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
34cc18d4de
gnu: r-biovizbase: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
94ae875c0a
gnu: r-organismdbi: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.22.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
bbcd19fb4d
gnu: r-ensembldb: Update to 2.4.1.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.4.1.
[propagated-inputs]: Remove r-annotationhub.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
19adb89854
gnu: r-dirichletmultinomial: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.22.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
d3fb2ad834
gnu: r-complexheatmap: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.18.0.
2018-06-02 13:39:11 +02:00