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26529 Commits

Author SHA1 Message Date
Marius Bakke 7bd9af7376
gnu: libsodium: Update to 1.0.16. 
* gnu/packages/crypto.scm (libsodium): Update to 1.0.16.
 2017-12-18 23:25:20 +01:00
Marius Bakke 8e9b3c6647
gnu: expect: Update to 5.45.3. 
* gnu/packages/tcl.scm (expect): Update to 5.45.3.
 2017-12-18 23:25:20 +01:00
Kei Kebreau 63dc763816
gnu: deutex: Update to 5.1.0. 
* gnu/packages/games.scm (deutex): Update to 5.1.0.
 2017-12-18 17:19:58 -05:00
Ludovic Courtès 45f6211730
doc: Clarify treatment of the root account. 
* doc/guix.texi (operating-system Reference): Clarify the situation of
UID 0.
 2017-12-18 23:17:30 +01:00
Ludovic Courtès 3caab236c4
guix gc: '--verify=foo' is reported as an error. 
Fixes <https://bugs.gnu.org/29761>.
Reported by Martin Castillo <castilma@uni-bremen.de>.

* guix/scripts/gc.scm (argument->verify-options): New procedure.
(%options) ["verify"]: Adjust to use it.
* tests/guix-gc.sh: Add test.
 2017-12-18 23:17:30 +01:00
Kei Kebreau 147d42fc03
gnu: emacspeak: Update to 47.0. 
* gnu/packages/emacs.scm (emacspeak): Update to 47.0.
[source]: Remove snippet.
[arguments]: Set SHELL environment variable.
 2017-12-18 16:50:45 -05:00
Efraim Flashner 91675d5082
gnu: rsync: Patch CVE-2017-{16548,17433,17434}. 
* gnu/packages/rsync.scm (rsync)[source]: Add patches.
[properties]: Mark CVE-2017-15994 as not relevant.
* gnu/packages/patches/rsync-CVE-2017-16548.patch,
gnu/packages/patches/rsync-CVE-2017-17433.patch,
gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch,
gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch,
gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2017-12-18 22:53:46 +02:00
Ludovic Courtès b50a9cc008
gnu: psm: Update home page URL. 
* gnu/packages/linux.scm (psm)[home-page]: Update.
[source](uri): Use it.
 2017-12-18 17:52:58 +01:00
Ludovic Courtès ab25eb7caa
gexp: 'computed-file' has a new #:guile parameter. 
* guix/gexp.scm (<computed-file>)[guile]: New field.
(computed-file): Add #:guile.
(computed-file-compiler): Honor 'guile'.
 2017-12-18 17:52:58 +01:00
Ludovic Courtès 4e9dfe399b
gnu: Fix ambiguous 'zip' reference. 
* gnu/packages/photo.scm: Hide 'zip' from (srfi srfi-1).
 2017-12-18 17:52:58 +01:00
Ludovic Courtès 399993f804
ui: Non-zero exit for compound '&message' and '&error-location' conditions. 
* guix/ui.scm (call-with-error-handling): When both 'message?' and
'error-location?' are true, add call to 'exit'.
 2017-12-18 17:52:58 +01:00
Mathieu Othacehe 9f1e39d1fc
system: examples: Add a template for BeagleBone Black. 
* gnu/system/examples/beaglebone-black.tmpl: New file.
* Makefile.am (EXAMPLES): Add it.
* gnu/system/install.scm (/etc/configuration-files): Add it.
 2017-12-18 15:28:14 +01:00
Tobias Geerinckx-Rice af8c547d33
gnu: claws-mail: Update to 3.16.0. 
* gnu/packages/mail.scm (claws-mail): Update to 3.16.0.
 2017-12-18 15:22:08 +01:00
Clément Lassieur b05e8ee120
services: nginx: Allow to add raw content to the server blocks. 
* doc/guix.texi (Web Services): Document 'raw-content'.
* gnu/services/web.scm (<nginx-server-configuration>)[raw-content]: New field.
(emit-nginx-server-config): Add it.
 2017-12-18 12:03:14 +01:00
Clément Lassieur 8b223ceac4
services: nginx: Replace 'http-port' and 'https-port' with 'listen'. 
* doc/guix.texi (Web Services, Version Control Services): Update accordingly.
* gnu/services/certbot.scm (certbot-nginx-server-configurations): Likewise.
* gnu/services/version-control.scm (%cgit-configuration-nginx): Likewise.
* gnu/services/web.scm (<nginx-server-configuration>,
emit-nginx-server-config): Likewise.
* gnu/tests/version-control.scm (%cgit-configuration-nginx,
%git-nginx-configuration): Likewise.
* gnu/tests/web.scm (%nginx-servers, %php-fpm-nginx-server-blocks): Likewise.
 2017-12-18 12:03:14 +01:00
Ricardo Wurmus f1a2b1cb20
gnu: r-seurat: Update to 2.1.0. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0.
[propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica,
r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr,
r-rcppeigen, r-fastica.
 2017-12-18 12:01:35 +01:00
Ricardo Wurmus fff9b88439
gnu: Add r-diffusionmap. 
* gnu/packages/graph.scm (r-diffusionmap): New variable.
 2017-12-18 12:01:35 +01:00
Ricardo Wurmus 007f6d9885
gnu: Add r-ggjoy. 
* gnu/packages/cran.scm (r-ggjoy): New variable.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus f90018e568
gnu: Add r-ggridges. 
* gnu/packages/cran.scm (r-ggridges): New variable.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus ae3f207951
gnu: Add r-scatterplot3d. 
* gnu/packages/cran.scm (r-scatterplot3d): New variable.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus 15ef07f00e
gnu: Add r-sdmtools. 
* gnu/packages/cran.scm (r-sdmtools): New variable.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus bf025ff6f2
gnu: Add r-dtw. 
* gnu/packages/cran.scm (r-dtw): New variable.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus ae16426007
gnu: Add r-ica. 
* gnu/packages/cran.scm (r-ica): New variable.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus 8271b8d22a
gnu: r-seurat: Fix ModularityOptimizer.jar. 
* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class
attribute in manifest.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus b6313997ad
gnu: qmidiarp: Update to 0.6.5. 
* gnu/packages/music.scm (qmidiarp): Update to 0.6.5.
 2017-12-18 12:01:33 +01:00
Ricardo Wurmus cf31d5e114
gnu: Add noise-repellent. 
* gnu/packages/audio.scm (noise-repellent): New variable.
 2017-12-18 12:01:33 +01:00
Ricardo Wurmus 13edf1b9ea
gnu: Add aj-snapshot. 
* gnu/packages/music.scm (aj-snapshot): New variable.
 2017-12-18 12:01:33 +01:00
Ricardo Wurmus 39b335849b
gnu: Add jack-capture. 
* gnu/packages/music.scm (jack-capture): New variable.
 2017-12-18 12:01:33 +01:00
Ricardo Wurmus 4071379357
gnu: Add qjackrcd. 
* gnu/packages/audio.scm (qjackrcd): New variable.
 2017-12-18 12:01:33 +01:00
Ricardo Wurmus 92b36e3aa5
gnu: Add whysynth. 
* gnu/packages/music.scm (whysynth): New variable.
 2017-12-18 12:01:33 +01:00
Ricardo Wurmus f7ce213404
gnu: Add sonivox-eas. 
* gnu/packages/music.scm (sonivox-eas): New variable.
 2017-12-18 12:01:32 +01:00
Martin Castillo 5a5d1a7f47
doc: Fix typo. 
* doc/guix.texi: remove double occurence of generations.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-12-18 11:12:45 +01:00
Ludovic Courtès 4423302724
nls: Update 'hu' translation. 2017-12-18 11:12:41 +01:00
Leo Famulari 2ca712bdba
vm: Pass the host's /dev/urandom to the guest at /dev/hwrng. 
* gnu/build/vm.scm (load-in-linux-vm): Use QEMU's virtio-rng-pci.
* gnu/system/vm.scm (common-qemu-options): Likewise.
 2017-12-18 00:39:40 -05:00
Mark H Weaver 87dbb634a9
gnu: openssl: Update replacement to 1.0.2n [fixes CVE-2017-{3737,3738}]. 
* gnu/packages/tls.scm (openssl)[replacement]: Use openssl-1.0.2n.
(openssl-1.0.2m): Replace with ...
(openssl-1.0.2n): ... this updated version.  Update comment.
 2017-12-17 21:10:45 -05:00
Christopher Baines 98cf8ca89a
gnu: Add mod-wsgi. 
* gnu/packages/web.scm (mod-wsgi): New variable.
 2017-12-17 20:46:46 +00:00
Christopher Baines e0d96774dd
gnu: system: vm: Use loose cache for 9p file system. 
This improves the performance of the shared store for operations involving
lots of files, e.g. searching through the store.

* gnu/system/vm.scm (mapping->file-system): Add cache=loose to options.
 2017-12-17 20:46:40 +00:00
Ludovic Courtès 56d924a59b
gnu: grammalecte: Fix 'license' field. 
* gnu/packages/dictionaries.scm (grammalecte)[license]: Change name to
'gpl3+'.
 2017-12-17 21:38:03 +01:00
Ludovic Courtès 16613d230b
man-db: Autoload (gdbm). 
Fixes 'guix pull'.
Reported by ofosos on #guix.

* guix/man-db.scm: Use 'module-autoload!' instead of 'module-use!'.
so that (gdbm) is not loaded until we need it.
 2017-12-17 21:38:03 +01:00
Christopher Baines e8a051ee7c
services: certbot: Fix certbot renewal job. 
Quote the list of hosts, to avoid generating a broken job definition.

* gnu/services/certbot.scm (certbot-renewal-jobs): Quote the hosts when
  passing them in to the job gexp.
 2017-12-17 20:37:12 +00:00
Nicolas Goaziou ad564a06ad
gnu: Add grammalecte. 
* gnu/packages/dictionaries.scm (grammalecte): New variable.
 2017-12-17 18:58:17 +01:00
Mark Meyer 217f704c6a
gnu: gourmet: Fix runtime failure and enhance plugin. 
Fixes <https://bugs.gnu.org/29227>.
Reported by Caleb Herbert <csh@bluehome.net>.

* gnu/packages/nutrition.scm (gourmet)[inputs]: Add python-lxml.
[arguments]: Custom install phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-12-17 17:22:31 +01:00
Ludovic Courtès 58d9e71bf1
gnu-maintenance: 'latest-ftp-release' ignores "unstable" directories. 
* guix/gnu-maintenance.scm (latest-ftp-release): Filter out "unstable"
directories.
 2017-12-17 16:52:27 +01:00
Ludovic Courtès f845793237
gnu: pinentry-tty: Add meta-data for 'guix refresh'. 
* gnu/packages/gnupg.scm (pinentry-tty)[properties]: New field.
 2017-12-17 16:49:45 +01:00
Ludovic Courtès b8396f96bf
profiles: Use (guix man-db) to create the manual database. 
Fixes <https://bugs.gnu.org/29654>.
Reported by Ruud van Asseldonk <dev+guix@veniogames.com>.

This also speeds up database creation compared to "man-db
--create" (less than half the time, on a warm cache, for 19k pages.)

* guix/man-db.scm: New file.
* Makefile.am (MODULES_NOT_COMPILED): Add it.
* guix/profiles.scm (manual-database): Rewrite to use (guix man-db).
 2017-12-17 16:19:00 +01:00
Danny Milosavljevic e25ca462e5
services: cleanup: Remove "/run/udev/watch.old" directory. 
* gnu/services.scm (cleanup-gexp): Remove "/run/udev/watch.old" directory.
 2017-12-17 08:32:37 +01:00
Efraim Flashner bc3d607748
gnu: global: Update to 6.6.1 [fixes CVE-2017-17531]. 
* gnu/packages/code.scm (global): Update to 6.6.1.
 2017-12-17 08:51:26 +02:00
Leo Famulari bef02e9e1c
gnu: python-dulwich: Update to 0.18.6 [fixes CVE-2017-16228]. 
* gnu/packages/python.scm (python-dulwich, python2-dulwich): Update to 0.18.6.
 2017-12-16 17:04:05 -05:00
Mark Meyer 1475d5c6c7
gnu: krita: Enhance krita. 
* gnu/packages/kde.scm (krita)[inputs]: Add libjpeg-turbo, ilmbase and openexr.
[native-inputs]: Add vc.
[arguments]: Set path to headers for ilmbase.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2017-12-16 16:50:31 -05:00
Leo Famulari e908a5af89
gnu: borg: Fix a data loss bug. 
See <https://github.com/borgbackup/borg/issues/3444> for more information.

* gnu/packages/patches/borg-fix-archive-corruption-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (borg)[source]: Use it.
 2017-12-16 16:33:32 -05:00