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39179 Commits

Author SHA1 Message Date
Eric Bavier 7e309e8a8d
gnu: dealii-openmpi: Setup MPI for tests. 
* gnu/packages/maths.scm (dealii-openmpi)[arguments]: Add 'mpi-setup' phase.
 2019-01-25 13:10:05 -06:00
Eric Bavier 6161141e91
superlu-dist: Upgrade to 6.1.0. 
* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file.
* gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0.  Remove
extraneous 'use-modules' in snippet.
[build-system]: Change to cmake-build-system.
[propagated-inputs]:   Replace pt-scotch with pt-scotch32 to match integer
sizes.  Add "parmetis" input, from pt-scotch32.  Move lapack to ...
[inputs]: ...here.  Add openblas and combinatorial-blas.
[arguments]: Replace 'configure' phase with #:configure-flags.  Add
'set-c++-standard' and 'omp-setup' phases.  Remove
'create-install-directories, 'check', and 'install' phases, which are now
handled by cmake.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2019-01-25 13:10:05 -06:00
Eric Bavier fd3733432b
scotch: Upgrade to 6.0.6. 
* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6.
[source]: Remove patches that have been fixed upstream.
[arguments]: Add 'install-metis' phase.
[outputs]: New field.
(pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase.  Use 'invoke'.
* gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch,
gnu/packages/patches/scotch-test-threading.patch: Delete files.
* gnu/packages/patches/scotch-integer-declarations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
 2019-01-25 13:10:05 -06:00
Eric Bavier a6b9ebc2fc
gnu: Add Combinatorial BLAS. 
* gnu/packages/maths.scm (combinatorial-blas): New variable.
* gnu/packages/patches/combinatorial-blas-awpm.patch,
gnu/packages/patches/combinatorial-blas-io-fix.patch: New files
* gnu/local.mk(dist_patch_DATA): Add them.
 2019-01-25 13:09:47 -06:00
Danny Milosavljevic 519be98c35
linux-modules: module-soft-dependencies: Remove colon from section names. 
Follow-up to 1a5f46621b.

* gnu/build/linux-modules.scm (module-soft-dependencies): Remove colon from
section names.
 2019-01-25 18:24:00 +01:00
Danny Milosavljevic 1a5f46621b
linux-modules: Add module-soft-dependencies. 
* gnu/build/linux-modules.scm (not-softdep-whitespace): New variable.
(module-soft-dependencies): New procedure.
 2019-01-25 18:14:16 +01:00
Nicolas Goaziou 1faf0a0459
gnu: Add stepmania. 
* gnu/packages/games.scm (stepmania):
* gnu/packages/video.scm (ffmpeg-for-stepmania): New variables.
 2019-01-25 18:08:21 +01:00
Ricardo Wurmus 81cf0174b5
gnu: kcoreaddons: Fix broken test. 
* gnu/packages/kde-frameworks.scm (kcoreaddons)[arguments]: Add build phase
"fix-broken-test".
 2019-01-25 15:37:23 +01:00
Ricardo Wurmus fd007bebdd
gnu: infiniband-diags: Remove custom bootstrap phase. 
* gnu/packages/fabric-management.scm (infiniband-diags)[arguments]: Remove
"autotools" phase.
 2019-01-25 15:20:53 +01:00
Ricardo Wurmus 776248419f
gnu: gpgme: Update to 1.12.0. 
* gnu/packages/gnupg.scm (gpgme): Update to 1.12.0.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus 1d7b8a2452
gnu: gpgme: Add patch to fix qgpgme tests. 
* gnu/packages/gnupg.scm (gpgme)[source]: Add upstream patch.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus a8416e6951
gnu: pcb-rnd: Use INVOKE. 
* gnu/packages/engineering.scm (pcb-rnd)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus 5cb9754cf4
gnu: proplib: Use INVOKE. 
* gnu/packages/embedded.scm (proplib)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus 78854b3849
gnu: jimtcl: Use INVOKE. 
* gnu/packages/embedded.scm (jimtcl)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus 3af2708881
gnu: greenisland: Use INVOKE. 
* gnu/packages/display-managers.scm (greenisland)[arguments]: Use INVOKE in
check phase.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus 3692cffed4
gnu: assword: Use INVOKE. 
* gnu/packages/password-utils.scm (assword)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus c9a65d5c37
gnu: python-oslosphinx: Use INVOKE. 
* gnu/packages/openstack.scm (python-oslosphinx)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus c8780a1038
gnu: python-reno: Use INVOKE. 
* gnu/packages/openstack.scm (python-reno)[arguments]: Use INVOKE.
[native-inputs]: Replace "git" with "git-minimal".
 2019-01-25 15:17:47 +01:00
Gabriel Hondet 4ad7d037ad
gnu: Add ghc-libmpd. 
* gnu/packages/haskell.scm (ghc-libmpd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-25 14:06:38 +01:00
Ludovic Courtès bd414e273c
weather: Add '--coverage'. 
* guix/scripts/weather.scm (show-help, %options): Add '--coverage'.
(package-partition-boundary, package->output-mapping)
(substitute-oracle, report-package-coverage-per-system)
(report-package-coverage): New procedures.
(guix-weather): Honor '--coverage'.
* doc/guix.texi (Invoking guix weather): Document it.
 2019-01-25 14:06:37 +01:00
Ludovic Courtès af77219e8a
refresh: Better account for private and generated packages. 
Until now, private and generated packages (e.g., those created by
'texlive-union') we missing from the list passed to 'node-back-edges',
which would lead to inaccurate dependent counts.

Previously we'd get:

  $ guix refresh -l texlive-fonts-cm
  Building the following 80 packages would ensure 116 dependent packages
  are rebuilt: …

Now we have:

  $ Building the following 240 packages would ensure 597 dependent
  packages are rebuilt: …

* guix/scripts/refresh.scm (list-dependents): Call 'package-closure'.
 2019-01-25 14:06:37 +01:00
Ludovic Courtès 4d6ce0f12c
refresh: Fix format string that would lead '-l' to print incorrect numbers. 
The skip "~*" argument was misplaced, leading the number of dependents
to be skipped (instead of the number of covering packages.)  Thus, we'd
get:

  $ guix refresh -l ocaml4.02-ppx-deriving@4.1
  Building the following package would ensure 1 dependent packages are rebuilt: bap@1.3.0

instead of:

  Building the following package would ensure 26 dependent packages are rebuilt: bap@1.3.0

* guix/scripts/refresh.scm (list-dependents): Move "~*" in the right
place, to skip (length covering) rather than (length dependents).
 2019-01-25 14:06:37 +01:00
Ludovic Courtès 731c1a20bc
weather: Ignore deprecated packages but not hidden packages. 
* guix/scripts/weather.scm (all-packages): Pass #:select? to
'fold-packages'.
 2019-01-25 14:06:37 +01:00
Ludovic Courtès 3e223a22a7
packages: Add 'package-closure'. 
* guix/packages.scm (package-closure): New procedure.
* tests/packages.scm ("package-closure"): New test.
 2019-01-25 14:06:37 +01:00
Ricardo Wurmus c6e33df90f
gnu: python-pyopenssl: Update to 19.0.0. 
* gnu/packages/python-crypto.scm (python-pyopenssl): Update to 19.0.0.
[arguments]: Use INVOKE.
 2019-01-25 14:02:04 +01:00
Ricardo Wurmus 39df4d1992
gnu: python2-pyqt-4: Use INVOKE. 
* gnu/packages/qt.scm (python2-pyqt-4)[arguments]: Use INVOKE.
 2019-01-25 13:59:53 +01:00
Ricardo Wurmus 41173df9f8
gnu: qwt: Use INVOKE. 
* gnu/packages/qt.scm (qwt)[arguments]: Use INVOKE.
 2019-01-25 13:53:04 +01:00
Ricardo Wurmus 5b8484635f
gnu: ldb: Use INVOKE. 
* gnu/packages/samba.scm (ldb)[arguments]: Use INVOKE.
 2019-01-25 13:44:13 +01:00
Ricardo Wurmus ed0d6ed9a6
gnu: tevent: Use INVOKE. 
* gnu/packages/samba.scm (tevent)[arguments]: Use INVOKE.
 2019-01-25 13:42:58 +01:00
Ricardo Wurmus d83c52c6bb
gnu: talloc/static: Use INVOKE. 
* gnu/packages/samba.scm (talloc/static)[arguments]: Use INVOKE in the build
phase.
 2019-01-25 13:39:12 +01:00
Ricardo Wurmus ed5900890e
gnu: tre: Use INVOKE. 
* gnu/packages/regex.scm (tre)[arguments]: Use INVOKE.
 2019-01-25 13:37:36 +01:00
Ricardo Wurmus 4255818d1c
gnu: python-rdflib: Use PYPI-URI. 
* gnu/packages/rdf.scm (python-rdflib)[source]: Use PYPI-URI.
[arguments]: Use INVOKE in commented build phase.
 2019-01-25 13:36:14 +01:00
Ricardo Wurmus 48b11025b7
gnu: ocaml-utop: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-utop)[arguments]: Use INVOKE.
 2019-01-25 13:32:41 +01:00
Ricardo Wurmus c6aaa7bed6
gnu: ocaml-zed: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-zed)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:32:04 +01:00
Ricardo Wurmus 04daa1ed72
gnu: ocaml-zarith: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-zarith)[arguments]: Use INVOKE.
 2019-01-25 13:31:29 +01:00
Ricardo Wurmus 2c0234e78e
gnu: camlp4-4.02: Use INVOKE. 
* gnu/packages/ocaml.scm (camlp4-4.02)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:26:24 +01:00
Ricardo Wurmus fa5d6e4c6f
gnu: ocaml-4.01: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-4.01)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:23:27 +01:00
Ricardo Wurmus bb29e855da
gnu: ocaml-4.02: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-4.02)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:22:34 +01:00
Ricardo Wurmus 20fe9728c4
gnu: tomsfastmath: Use INVOKE. 
* gnu/packages/multiprecision.scm (tomsfastmath)[arguments]: Use INVOKE in
"check" phase.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus 6542b2db5d
gnu: freetalk: Remove custom bootstrap phase. 
* gnu/packages/messaging.scm (freetalk)[arguments]: Remove "autogen" phase.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus 3fa013af78
gnu: perl-net-psyc: Update to 1.3. 
* gnu/packages/messaging.scm (perl-net-psyc): Update to 1.3.
[native-inputs]: Add unzip.
[arguments]: Use INVOKE in build phase.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus b11af07a29
gnu: dino: Update to 0.0-4.8e14ac6. 
* gnu/packages/messaging.scm (dino): Update to 0.0-4.8e14ac6.
[arguments]: Use INVOKE in build phases.
[inputs]: Add qrencode; replace sqlite with sqlite-with-column-metadata.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus e6a24cd08b
gnu: bitlbee-discord: Do not run autogen.sh in custom autogen phase. 
* gnu/packages/messaging.scm (bitlbee-discord)[arguments]: Rename "autogen"
phase to "patch-autogen"; don't invoke "autogen.sh" script as it is invoked in
the "bootstrap" phase; return #T from "patch-autogen" phase.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus bea06837a3
gnu: bitlbee: Use INVOKE. 
* gnu/packages/messaging.scm (bitlbee)[arguments]: Use INVOKE.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus 7d416066cd
gnu: ccl: Unconditionally return #T from build phases. 
* gnu/packages/lisp.scm (ccl)[arguments]: Use INVOKE and return #T from build
phases.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus 4c523c4535
gnu: python-lirc: Update to 1.2.1-2.c28708b. 
* gnu/packages/lirc.scm (python-lirc, python2-lirc): Update to
1.2.1-2.c28708b.
[arguments]: Use INVOKE.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus 9a425d68d4
gnu: python-pygpgme: Use INVOKE. 
* gnu/packages/gnupg.scm (python-pygpgme)[arguments]: Use INVOKE.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus cba8ba8b0d
gnu: brdf-explorer: Unconditionally return #T from build phases. 
* gnu/packages/graphics.scm (brdf-explorer)[arguments]: Use INVOKE and return #T.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus ec7245f0db
gnu: ncftp: Use INVOKE. 
* gnu/packages/ftp.scm (ncftp)[arguments]: Use INVOKE.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus 15dc8ed5f4
gnu: libxdg-basedir: Don't run autogen.sh manually. 
* gnu/packages/freedesktop.scm (libxdg-basedir)[arguments]: Rename "autogen"
phase to "patch-autogen"; remove invocation of "autogen.sh" script as it will
be executed in the "bootstrap" phase.
 2019-01-25 13:21:19 +01:00