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34120 Commits

Author SHA1 Message Date
Christopher Baines 26b8cd1a5a
gnu: Remove duplicated emacs-csv-mode. 
It was first added in 9faa46ee48, and then again
in 8bc8efc753.

* gnu/packages/emacs.scm (emacs-csv-mode): Remove duplicated package
definition.
 2018-07-29 17:57:52 +01:00
Ludovic Courtès 99b78ba498
linux-initrd: Report only missing modules, not all needed modules. 
Previously the warning would list all the required modules rather than
just those that are missing.

* gnu/system/mapped-devices.scm (check-device-initrd-modules): Compute
'missing' and report it.
 2018-07-29 18:50:28 +02:00
Ludovic Courtès fcd068e984
linux-initrd: Try several file names when looking up modules. 
Fixes <https://bugs.gnu.org/31714>.
Reported by Tonton <tonton@riseup.net>.

* gnu/build/linux-modules.scm (find-module-file): New procedure.
* gnu/system/linux-initrd.scm (flat-linux-module-directory)[build-exp]:
Remove 'lookup' procedure and use 'find-module-file' instead.
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Add
comment.
 2018-07-29 18:50:28 +02:00
Ludovic Courtès d2a1cf45f7
linux-initrd: Improve check of initrd modules. 
Previously we would not strip the ".ko" suffix if present.

* gnu/build/linux-modules.scm (file-name->module-name): Export.
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Use
'file-name->module-name' instead of 'normalize-module-name'.
 2018-07-29 18:50:28 +02:00
Eric Brown 5b68239072
services: openssh: Add forwarding options. 
* gnu/services/ssh.scm (<openssh-configuration>)[allow-agent-forwarding?]
[allow-tcp-forwarding?, gateway-ports?]: New fields.
(openssh-config-file): Handle them.
* doc/guix.texi (Networking Services): Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-07-29 18:50:28 +02:00
Ludovic Courtès b90d97ec2e
ssh: Display the size of the store items being sent. 
* guix/ssh.scm (send-files): Compute the size of MISSING and display
it.
 2018-07-29 18:50:28 +02:00
Ben Woodcroft 3f8c82e6d3
gnu: taxtastic: Add missing propagated-inputs. 
* gnu/packages/bioinformatics.scm (taxtastic)[propagated-inputs]: Add
python-psycopg2, python-fastalite, python-pyyaml, python-six, python-jinja2,
python-dendropy.
 2018-07-29 22:53:10 +10:00
Ben Woodcroft 9e0c135c39
gnu: python-dendropy: Update to 4.4.0. 
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy):
Update to 4.4.0.
[source]: Use GitHub URI. Remove patch.
[properties]: Remove field.
(python2-dendropy)[arguments]: Run tests with setup.py.
[native-inputs]: Remove 'python2-nose.
* gnu/packages/patches/python-dendropy-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete it.
 2018-07-29 22:53:10 +10:00
Ben Woodcroft 19601e895b
gnu: python2-psycopg2: Update to 2.7.5. 
* gnu/packages/bioinformatics.scm (python2-psycopg2): Update to 2.7.5.
 2018-07-29 22:53:10 +10:00
Ben Woodcroft 5d5a02dd4c
gnu: Add python-fastalite. 
* gnu/packages/bioinformatics.scm (python-fastalite, python2-fastalite):
New variables.
 2018-07-29 21:58:00 +10:00
Christopher Lemmer Webber 10d5315361
gnu: Add chroma. 
* gnu/packages/games.scm (chroma): New variable.
 2018-07-29 09:37:20 +02:00
Mark H Weaver f8e2df9851
gnu: linux-libre: Update to 4.17.11. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.11.
(%linux-libre-hash): Update hash.
 2018-07-29 03:32:03 -04:00
Mark H Weaver c85a76cc00
gnu: linux-libre@4.14: Update to 4.14.59. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.59.
(%linux-libre-4.14-hash): Update hash.
 2018-07-29 03:31:10 -04:00
Mark H Weaver 8b30bc82dc
gnu: linux-libre@4.9: Update to 4.9.116. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.116.
 2018-07-29 03:30:32 -04:00
Mark H Weaver 4262a491ce
gnu: linux-libre@4.4: Update to 4.4.145. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.145.
 2018-07-29 03:29:42 -04:00
Gábor Boskovits 6219685922
gnu: clojure: Fix index generation. 
* gnu/packages/java.scm (clojure)[arguments]: Add phase 'fix-manifest-classpath to remove
offending directory entry making indexing fail.
 2018-07-29 08:41:34 +02:00
Marius Bakke d37d975b74
gnu: python-pytest: Update to 3.6.4. 
* gnu/packages/check.scm (python-pytest): Update to 3.6.4.
[native-inputs]: Remove PYTHON-INVOKE.
 2018-07-28 23:39:00 +02:00
Marius Bakke 20b0aaf986
gnu: python-fonttools: Update license. 
This is a follow-up to commit 4696368108.

* gnu/packages/python.scm (python-fonttools)[license]: Change to EXPAT (since 3.21).
 2018-07-28 23:37:52 +02:00
Marius Bakke d0ab3c33b7
gnu: mesa: Update to 18.1.5. 
* gnu/packages/gl.scm (mesa): Update to 18.1.5.
 2018-07-28 21:35:07 +02:00
Marius Bakke 148df6052c
Revert "Revert "gnu: llvm: Update to 6.0.1."" 
This reverts commit bb8221d41c.
 2018-07-28 21:23:11 +02:00
Efraim Flashner a4b7a1cb4a
gnu: python-3.7: Update deleted tests. 
* gnu/packages/python.scm (python-3.7)[source]: Update the list of files
to be deleted in the snippet.
 2018-07-28 21:56:28 +03:00
Marius Bakke 0333582477
gnu: mariadb: Move GCC ICE patch to the usual location. 
* gnu/packages/databases.scm (mariadb)[source](patches): New field.
[arguments]: Don't disable semisync plugin.
[inputs]: Remove 'mariadb-gcc-ice.patch'.
 2018-07-28 18:37:37 +02:00
Marius Bakke 1af575f04d
Merge branch 'master' into staging 2018-07-28 18:34:59 +02:00
Marius Bakke 48d7ac175f
gnu: openlibm: Update to 0.6.0. 
* gnu/packages/maths.scm (openlibm): Update to 0.6.0.
 2018-07-28 18:12:13 +02:00
Marius Bakke 46bda5eb7a
gnu: glm: Update home page. 
* gnu/packages/maths.scm (glm)[home-page]: Use HTTPS.
 2018-07-28 17:56:59 +02:00
Marius Bakke 5ea4b5943d
gnu: glm: Update to 0.9.9.0. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.0.
[source](uri): Change to new download location.
 2018-07-28 17:55:04 +02:00
Marius Bakke 71de61c353
gnu: libjpeg-turbo: Update license. 
* gnu/packages/image.scm (libjpeg-turbo)[license]: Add ZLIB.
 2018-07-28 17:27:16 +02:00
Marius Bakke 6871121be0
gnu: libjpeg-turbo: Update to 2.0.0. 
* gnu/packages/image.scm (libjpeg-turbo): Update to 2.0.0.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
 2018-07-28 17:27:16 +02:00
Marius Bakke 0981ec1300
gnu: accountsservice: Update to 0.6.50. 
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.50.
[arguments]: Add "--enable-elogind" and "--disable-systemd" to #:configure-flags.
[inputs]: Add ELOGIND.
 2018-07-28 17:27:15 +02:00
Marius Bakke 35fa923d8b
gnu: dconf: Update to 0.28.0. 
* gnu/packages/gnome.scm (dconf): Update to 0.28.0.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
[native-inputs]: Add VALA and GLIB:BIN.
 2018-07-28 17:27:15 +02:00
Marius Bakke e20e6b4061
gnu: dconf: Update license. 
* gnu/packages/gnome.scm (dconf)[license]: Change from LGPL2.1 to LGPL2.1+.
 2018-07-28 17:27:15 +02:00
Marius Bakke 03676d6f35
gnu: dconf: Install GTK documentation. 
* gnu/packages/gnome.scm (dconf)[native-inputs]: Add GTK-DOC.
[arguments]: Adjust #:configure-flags accordingly.
 2018-07-28 17:27:15 +02:00
Marius Bakke bc036f4c99
gnu: dconf: Adjust inputs and remove obsolete workaround. 
* gnu/packages/gnome.scm (dconf)[inputs]: Remove GLIB and LIBXML2.
[propagated-inputs]: Add GLIB.
[native-inputs]: Add LIBXML2.  Remove INTLTOOL.
[arguments]: Remove #:phases.
 2018-07-28 17:27:15 +02:00
Marius Bakke 4696368108
gnu: python-fonttools: Update to 3.28.0. 
* gnu/packages/python.scm (python-fonttools): Update to 3.28.0.
[arguments]: Remove.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
 2018-07-28 15:52:30 +02:00
Marius Bakke fc8778e293
gnu: gdb: Fix build with Python >= 3.7. 
* gnu/packages/patches/gdb-python-3.7.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gdb.scm (gdb)[source](patches): New field.
 2018-07-28 15:52:30 +02:00
Marius Bakke 25ccb99347
gnu: python-pytest-mock: Update to 1.10.0. 
* gnu/packages/check.scm (python-pytest-mock): Update to 1.10.1.
 2018-07-28 15:52:30 +02:00
Marius Bakke a9ae30b78e
gnu: python-pytest: Update to 3.6.3. 
* gnu/packages/check.scm (python-pytest): Update to 3.6.3.
[propagated-inputs]: Add PYTHON-ATOMICWRITES.
[native-inputs]: Add PYTHON-INVOKE.
 2018-07-28 15:52:29 +02:00
Marius Bakke 1166b9c795
gnu: Add python-invoke. 
* gnu/packages/python.scm (python-invoke, python2-invoke): New public variables.
 2018-07-28 15:52:29 +02:00
Marius Bakke 9f585a528e
gnu: python-pytest-cov: Update to 2.5.1. 
* gnu/packages/check.scm (python-pytest-cov): Update to 2.5.1.
 2018-07-28 15:52:29 +02:00
Marius Bakke 85f1342f01
gnu: python-hypothesis: Update to 3.66.6. 
* gnu/packages/check.scm (python-hypothesis): Update to 3.66.6.
 2018-07-28 15:52:29 +02:00
Marius Bakke 153812ee0d
gnu: python-flake8: Update to 3.5.0. 
* gnu/packages/python.scm (python-flake8): Update to 3.5.0.
 2018-07-28 15:52:28 +02:00
Marius Bakke fb4c6115f5
gnu: python-pytest-runner: Update to 4.2. 
* gnu/packages/check.scm (python-pytest-runner): Update to 4.2.
[arguments]: Remove.
 2018-07-28 15:52:28 +02:00
Marius Bakke d0205dfd92
gnu: python-setuptools: Update to 40.0.0. 
* gnu/packages/python.scm (python-setuptools): Update to 40.0.0.
[source](uri): Adjust to zipball archive.
 2018-07-28 15:52:28 +02:00
Marius Bakke fdf5344a23
gnu: python-pycodestyle: Update to 2.4.0. 
* gnu/packages/python.scm (python-pycodestyle): Update to 2.4.0.
 2018-07-28 15:52:28 +02:00
Marius Bakke 9e7d6e818c
gnu: python-more-itertools: Update to 4.2.0. 
* gnu/packages/python.scm (python-more-itertools): Update to 4.2.0.
 2018-07-28 15:52:27 +02:00
Marius Bakke e8e7cd12c7
gnu: python-pyflakes: Update to 2.0.0. 
* gnu/packages/python.scm (python-pyflakes): Update to 2.0.0.
 2018-07-28 15:52:27 +02:00
Marius Bakke 3765c9c95b
gnu: python-py: Update home page. 
* gnu/packages/python.scm (python-py)[home-page]: Change to repository URL.
 2018-07-28 15:52:27 +02:00
Marius Bakke a0d77eba72
gnu: python-py: Update to 1.5.4. 
* gnu/packages/python.scm (python-py): Update to 1.5.4.
 2018-07-28 15:52:27 +02:00
Marius Bakke bc46a45ae7
gnu: python-py: Add missing dependency on setuptools-scm. 
* gnu/packages/python.scm (python-py)[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
 2018-07-28 15:52:26 +02:00
Marius Bakke a422e2478e
gnu: python: Build reproducibly. 
\o/

* gnu/packages/python.scm (python-3.7)[arguments]: Set PYTHONHASHSEED before
rebuilding all bytecode.  Adjust regex so that lib2to3_ex.py gets compiled.
 2018-07-28 15:52:26 +02:00