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19541 Commits

Author SHA1 Message Date
rennes 7fdca77e00
gnu: ustr: Fix build with GCC 5. 
* gnu/packages/patches/ustr-fix-build-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/textutils.scm (ustr)[source]: Use patch.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-23 14:34:09 -04:00
Sergei Trofimovich 096f008014
gnu: rcs: Fix build against gcc-5.4.0. 
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/patches/rcs-5.9.4-noreturn.patch: New file.
* gnu/packages/version-control.scm (rcs)[source]: Applied patch.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-23 19:26:27 +01:00
Ricardo Wurmus ce54f5db7d
gnu: gfortran-5: Move definition before "gfortran". 
This is a follow-up to commit cb4805e34c.

* gnu/packages/gcc.scm (gfortran-5): Move definition.
 2017-03-23 16:34:17 +01:00
Ricardo Wurmus cb4805e34c
gnu: gfortran: Change default version to gfortran-5. 
* gnu/packages/gcc.scm (gfortran): Point to gfortran-5.
 2017-03-23 15:37:24 +01:00
Efraim Flashner 0371b345e8
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-23 14:53:33 +02:00
Efraim Flashner 8be563a5a3
gnu: dtc: Build with flex-2.6.1. 
* gnu/packages/bootloaders.scm (dtc)[native-inputs]: Use flex-2.6.1 and
not flex.
 2017-03-23 14:40:40 +02:00
Peter Mikkelsen c53af0016e
gnu: idris: Update to 0.99.1. 
* gnu/packages/idris.scm (idris): Update to 0.99.1.
[inputs]: Add ghc-code-page.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-23 12:59:03 +01:00
Peter Mikkelsen df7309fc6e
gnu: Add ghc-code-page. 
* gnu/packages/haskell.scm (ghc-code-page): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-23 12:59:03 +01:00
Ricardo Wurmus 939b6b113b
gnu: star: Update to 2.5.3a. 
* gnu/packages/bioinformatics.scm (star): Update to 2.5.3a.
 2017-03-23 11:21:08 +01:00
Efraim Flashner d5ceeb5a2d
gnu: scotch: Build with flex-2.6.1. 
* gnu/packages/maths.scm (scotch)[native-inputs]: Use flex-2.6.1 and not
flex.
 2017-03-23 07:32:31 +02:00
Efraim Flashner 5302eba611
gnu: libffcall: Remove aarch64-linux from supported systems. 
* gnu/packages/libffcall.scm (libffcall)[supported-systems]: New field,
remove aarch64-linux.
[home-page]: Use https.
 2017-03-23 07:32:26 +02:00
Tobias Geerinckx-Rice b27bd0b057
gnu: youtube-dl: Update to 2017.03.22. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.22.
 2017-03-23 02:53:18 +01:00
Tobias Geerinckx-Rice a06cd95ab0
gnu: python-natsort: Update to 5.0.2. 
* gnu/packages/python.scm (python-natsort): Update to 5.0.2.
 2017-03-23 02:53:17 +01:00
Tobias Geerinckx-Rice e17a12482b
gnu: python2-futures: Update to 3.0.5. 
* gnu/packages/python.scm (python2-futures): Update to 3.0.5.
 2017-03-23 02:53:17 +01:00
Tobias Geerinckx-Rice 06fe79f263
gnu: python-rauth: Update to 0.7.3. 
* gnu/packages/python.scm (python-rauth): Update to 0.7.3.
 2017-03-23 02:53:17 +01:00
Tobias Geerinckx-Rice 36e0d9db90
gnu: python-ipaddress: Update to 1.0.18. 
* gnu/packages/python.scm (python-ipaddress): Update to 1.0.18.
 2017-03-23 02:53:16 +01:00
Tobias Geerinckx-Rice 543782e1ff
gnu: python-appdirs: Update to 1.4.3. 
* gnu/packages/python.scm (python-appdirs): Update to 1.4.3.
 2017-03-23 02:53:16 +01:00
Tobias Geerinckx-Rice 80e8d8517a
gnu: python-beautifulsoup4: Update to 4.5.3. 
* gnu/packages/python.scm (python-beautifulsoup4): Update to 4.5.3.
 2017-03-23 02:53:15 +01:00
Tobias Geerinckx-Rice 7c4279322e
gnu: python-drmaa: Update to 0.7.7. 
* gnu/packages/python.scm (python-drmaa): Update to 0.7.7.
 2017-03-23 02:53:15 +01:00
Tobias Geerinckx-Rice fd2662e950
gnu: python-sqlalchemy-utils: Update to 0.32.13. 
* gnu/packages/python.scm (python-sqlalchemy-utils): Update to 0.32.13.
 2017-03-23 02:53:15 +01:00
Tobias Geerinckx-Rice 745d85b7db
gnu: python-pafy: Update to 0.5.3.1. 
* gnu/packages/python.scm (python-pafy): Update to 0.5.3.1.
 2017-03-23 02:53:14 +01:00
Leo Famulari e20dafd0a1
gnu: gpsbabel: Fix a build failure with GCC 5. 
* gnu/packages/gps.scm (gpsbabel)[arguments]: Add -fPIC to #:configure-flags.
 2017-03-22 17:04:46 -04:00
Efraim Flashner 283f04b053
gnu: libffcall: Set source file-name. 
* gnu/packages/libffcall.scm (libffcall)[source]: Add file-name field.
[home-page]: Use https.
 2017-03-22 22:36:43 +02:00
Kei Kebreau 359e9c4215
gnu: chicken: Update to 4.12.0. 
* gnu/packages/scheme.scm (chicken): Update to 4.12.0.
 2017-03-22 15:31:17 -04:00
Efraim Flashner 44cba47e93
gnu: wine: Build with flex-2.6.1. 
* gnu/packages/wine.scm (wine)[native-inputs]: Use flex-2.6.1 and not
flex.
 2017-03-22 21:06:46 +02:00
Efraim Flashner 575a6f0f8a
gnu: binutils-vc4: Build with flex-2.6.1. 
* gnu/packages/embedded.scm (binutils-vc4)[native-inputs]: Use
flex-2.6.1 and not flex.
 2017-03-22 19:27:00 +02:00
Leo Famulari 112d645ffa
gnu: dovecot: Update to 2.2.28. 
* gnu/packages/mail.scm (dovecot): Update to 2.2.28.
 2017-03-22 13:04:29 -04:00
Danny Milosavljevic 9b7a9580d4
gnu: rustc: Honor max line length. 
* gnu/packages/rust.scm (rustc)[arguments]: patch-tests: Honor max line
length.
 2017-03-22 17:41:44 +01:00
Ludovic Courtès 61a3137bdd
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 73a4645.
 2017-03-22 16:05:46 +01:00
Efraim Flashner 493ae57eca
gnu: binutils-vc4: Set source file-name. 
* gnu/packages/embedded.scm (binutils-vc4)[source]: Add file-name field.
 2017-03-22 16:10:45 +02:00
Ludovic Courtès 73a46451af
build: 'test-driver.scm' prints Scheme values with 'write'. 
Previously it would print them with 'display', which was inconvenient.

* build-aux/test-driver.scm (test-display): Use ~S for VALUE.
(test-runner-gnu): Use 'format' instead of 'test-display' for the test
name, location, and result kind.
 2017-03-22 15:02:33 +01:00
Ludovic Courtès 50b4d3ac26
tests: Skip 'guix pack' test when networking is unavailable. 
* tests/pack.scm ("self-contained-tarball"): Skip unless (network-reachable?).
 2017-03-22 15:02:33 +01:00
Ludovic Courtès ed407f3ccc
tests: Fix 'cond-expand' clause for 2.2/2.0. 
Fixes a mistake in a9a0227c01.

* tests/store.scm ("current-build-output-port, UTF-8 + garbage"):
Inverse the 'cond-expand' clauses since the 'guile-2.0' feature doesn't
exist.
 2017-03-22 15:02:33 +01:00
Ricardo Wurmus dc8a34ed46
gnu: freeimage: Fix build with GCC 5. 
* gnu/packages/patches/freeimage-fix-build-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (freeimage)[source]: Add patch.
 2017-03-22 14:45:44 +01:00
Efraim Flashner aeb6fe5fa0
gnu: autoconf-archive: Update to 2017.03.21. 
* gnu/packages/autotools.scm (autoconf-archive): Update to 2017.03.21.
 2017-03-22 15:35:59 +02:00
Ludovic Courtès 4bb5e0aeb3
publish: Add '--nar-path'. 
* guix/scripts/publish.scm (show-help, %options): Add '--nar-path'.
(%default-options): Add 'nar-path'.
(guix-publish): Honor it.
 2017-03-22 14:05:59 +01:00
Ludovic Courtès cdd7a7d210
publish: Make the nar URL prefix a parameter. 
* guix/scripts/publish.scm (narinfo-string): Add #:nar-path and honor it.
(render-narinfo): Likewise.
(make-request-handler): Likewise.
(run-publish-server): Likewise.
* tests/publish.scm ("custom nar path"): New test.
 2017-03-22 14:05:59 +01:00
Ludovic Courtès 46f58390cb
publish: Add '--public-key' and '--private-key'. 
* guix/scripts/publish.scm (show-help, %options): Add --public-key and
--private-key.
* doc/guix.texi (Invoking guix publish): Document it.
 2017-03-22 14:05:59 +01:00
Ludovic Courtès ab2a74e4db
publish: The public and private keys are now SRFI-39 parameters. 
* guix/scripts/publish.scm (%default-options): Add 'public-key-file' and
'private-key-file'.
(lazy-read-file-sexp): Remove.
(%private-key, %public-key): Turn into SRFI-39 parameters.
(signed-string, render-narinfo): Adjust accordingly.
(guix-publish): Honor 'public-key-file' and 'private-key-file' from
OPTS.  Use 'parameterize'.
* guix/pk-crypto.scm (read-file-sexp): New procedure.
* tests/publish.scm: Initialize '%public-key' and '%private-key'.
 2017-03-22 14:05:59 +01:00
Ludovic Courtès 5cd074ea32
gnu: guile: Add 'guile-next' as a deprecated alias. 
This is a followup to f6396d862f.

* gnu/packages/guile.scm (guile-next): New variable.
 2017-03-22 14:05:58 +01:00
Danny Milosavljevic 326249bab8
gnu: rustc: End resultless phases in #t. 
* gnu/packages/rust.scm (rustc): End resultless phases in #t.
 2017-03-22 12:59:32 +01:00
Ricardo Wurmus 54262c5435
gnu: python-pysam: Run tests in parallel. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nose tests in
parallel.
 2017-03-22 12:33:28 +01:00
Ricardo Wurmus 71dbf592c4
gnu: python-pysam: Run tests before installation. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust check
phase to be run before installation.
 2017-03-22 12:33:28 +01:00
Ricardo Wurmus 879b521cd0
gnu: python-pysam: Update to 0.10.0. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.10.0.
 2017-03-22 12:33:24 +01:00
Ricardo Wurmus d553cd6015
gnu: python-pysam: Run tests in parallel. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nose tests in
parallel.
 2017-03-22 12:21:39 +01:00
Ricardo Wurmus 611154efc8
gnu: python-pysam: Run tests before installation. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust check
phase to be run before installation.
 2017-03-22 12:21:39 +01:00
Ricardo Wurmus 9488776a18
gnu: python-pysam: Update to 0.10.0. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.10.0.
 2017-03-22 12:21:38 +01:00
Efraim Flashner 378de69c59
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-22 12:57:37 +02:00
Efraim Flashner 0e7c3ba1c0
gnu: perl-mojolicious: Update to 7.29. 
* gnu/packages/perl-web.scm (perl-mojolicious): Update to 7.29.
 2017-03-22 12:56:23 +02:00
Efraim Flashner c70b50efb9
gnu: perl-io-compress: Update to 2.074. 
* gnu/packages/compression.scm (perl-io-compress): Update to 2.074.
[propagated-inputs]: Update minimum versions to 2.074.
 2017-03-22 12:50:36 +02:00