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32721 Commits

Author SHA1 Message Date
Ricardo Wurmus 624283a107
gnu: r-knitrbootstrap: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.2.
[propagated-inputs]: Add r-markdown.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 22cdc16fa4
gnu: r-pheatmap: Update to 1.0.10. 
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.10.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 99b225f3eb
gnu: r-bit: Update to 1.1-14. 
* gnu/packages/statistics.scm (r-bit): Update to 1.1-14.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 3c441be0f3
gnu: r-kernlab: Update to 0.9-26. 
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-26.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus ad016826c9
gnu: r-rmysql: Update to 0.10.15. 
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus aea3be250c
gnu: r-mice: Update to 3.0.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.0.0.
[propagated-inputs]: Add r-broom, r-dplyr, r-mitml, and r-rlang.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 6034a62a1b
gnu: r-callr: Update to 2.0.4. 
* gnu/packages/cran.scm (r-callr): Update to 2.0.4.
[propagated-inputs]: Add r-processx; remove r-assertthat, r-crayon, r-debugme,
and r-testthat.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus a8b4677b7c
gnu: r-openxlsx: Update to 4.1.0. 
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.
[propagated-inputs]: Add r-zip.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus e86d3cc501
gnu: r-shinyace: Update to 0.3.1. 
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.1.
[propagated-inputs]: Add r-jsonlite.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus a80606308a
gnu: r-processx: Update to 3.1.0. 
* gnu/packages/cran.scm (r-processx): Update to 3.1.0.
[propagated-inputs]: Remove r-debugme; add r-testthat.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9944399ae3
gnu: r-ggally: Update to 1.4.0. 
* gnu/packages/cran.scm (r-ggally): Update to 1.4.0.
[inputs]: Add libressl.
[propagated-inputs]: Add r-rlang.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 13079c143b
gnu: r-psych: Update to 1.8.4. 
* gnu/packages/cran.scm (r-psych): Update to 1.8.4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus aadb9ee6df
gnu: r-pillar: Update to 1.2.3. 
* gnu/packages/cran.scm (r-pillar): Update to 1.2.3.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 65ea783f6c
gnu: r-utf8: Update to 1.1.4. 
* gnu/packages/cran.scm (r-utf8): Update to 1.1.4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus c36745cf95
gnu: r-ggjoy: Update to 0.4.1. 
* gnu/packages/cran.scm (r-ggjoy): Update to 0.4.1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus cda93e8399
gnu: r-dtw: Update to 1.20-1. 
* gnu/packages/cran.scm (r-dtw): Update to 1.20-1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus fabf09934b
gnu: r-ica: Update to 1.0-2. 
* gnu/packages/cran.scm (r-ica): Update to 1.0-2.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 1e31e8bc74
gnu: r-sm: Update to 2.2-5.5. 
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.5.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus da5cca36b7
gnu: r-hardyweinberg: Update to 1.6.1. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 0759d87dfc
gnu: r-ggrepel: Update to 0.8.0. 
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.0.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus b13b56743b
gnu: r-cvst: Update to 0.2-2. 
* gnu/packages/cran.scm (r-cvst): Update to 0.2-2.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 975ea10d6f
gnu: r-energy: Update to 1.7-4. 
* gnu/packages/cran.scm (r-energy): Update to 1.7-4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 90f1ecb939
gnu: r-emdbook: Update to 1.3.10. 
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.10.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 0acbf8bbb7
gnu: r-inline: Update to 0.3.15. 
* gnu/packages/cran.scm (r-inline): Update to 0.3.15.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 207c497e14
gnu: r-ff: Update to 2.2-14. 
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus c81497b141
gnu: r-rcpp: Update to 0.12.17. 
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.17.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 5479e3e639
gnu: r-abbyyr: Update to 0.5.4. 
* gnu/packages/cran.scm (r-abbyyr): Update to 0.5.4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 11de8673d1
gnu: Add r-bibtex. 
* gnu/packages/cran.scm (r-bibtex): New variable.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9f56ceecf3
gnu: Add r-reticulate. 
* gnu/packages/cran.scm (r-reticulate): New variable.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus d182828f53
gnu: Add r-zip. 
* gnu/packages/cran.scm (r-zip): New variable.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 84e7147ae3
gnu: Add r-mitml. 
* gnu/packages/cran.scm (r-mitml): New variable.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 03e718fbb1
gnu: Add r-pan. 
* gnu/packages/cran.scm (r-pan): New variable.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus fe1495e35c
gnu: Add r-jomo. 
* gnu/packages/cran.scm (r-jomo): New variable.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 3ca317359c
gnu: r-vegan: Update to 2.5-2. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-2.
 2018-05-31 13:21:31 +02:00
Mark H Weaver 966e9575a3
gnu: linux-libre@4.14: Update to 4.14.47. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.47.
(%linux-libre-4.14-hash): Update hash.
(linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14)
(linux-libre-4.14): Remove patch.
 2018-05-31 04:17:22 -04:00
Mark H Weaver 55b68174aa
gnu: linux-libre@4.9: Update to 4.9.105. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.105.
Remove patch.
 2018-05-31 04:16:05 -04:00
Mark H Weaver 2aab213e36
gnu: linux-libre@4.4: Update to 4.4.135. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.135.
Remove patch.
 2018-05-31 04:14:57 -04:00
Ricardo Wurmus 1e341fa508
gnu: powertabeditor: Fix build with Qt 5.11. 
Fixes <https://bugs.gnu.org/31659>.

* gnu/packages/music.scm (powertabeditor)[arguments]: Add build phase
"add-missing-headers".
 2018-05-31 08:30:45 +02:00
Efraim Flashner d2dde99e99
gnu: mariadb: Update to 10.1.33. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.33.
 2018-05-31 08:45:58 +03:00
Mark H Weaver 0d6f84aab1
Merge branch 'master' into core-updates 2018-05-31 00:27:03 -04:00
Mark H Weaver 88a3465e4a
gnu: linux-libre: Revert bad upstream patch in 4.14/4.9/4.4 kernels. 
Apply the 1-line revert from upstream that was the sole fix in 4.14.47,
4.9.105, and 4.4.135.  Here we cherry-pick the patch until the corresponding
linux-libre versions are released.

* gnu/packages/linux.scm (linux-libre-4.14, linux-libre-4.9)
(linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14)
(linux-libre-4.4): Add the patch.
 2018-05-31 00:23:41 -04:00
Jonathan Brielmaier 706d6190ca
gnu: 0ad: Update to 0.0.23-alpha. 
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.23-alpha.
[source]: Use HTTPS URL.
[inputs]: Add libsodium.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-05-31 00:21:47 -04:00
Tobias Geerinckx-Rice e9ae846667
gnu: knot: Update to 2.6.7. 
* gnu/packages/dns.scm (knot): Update to 2.6.7.
 2018-05-31 04:54:58 +02:00
Tobias Geerinckx-Rice 51c4fb007a
gnu: duperemove: Update to 0.11. 
* gnu/packages/disk.scm (duperemove): Update to 0.11.
 2018-05-31 04:54:58 +02:00
Tobias Geerinckx-Rice 42d93a32ee
gnu: sakura: Update to 3.6.0. 
* gnu/packages/terminals.scm (sakura): Update to 3.6.0.
 2018-05-31 04:54:58 +02:00
Tobias Geerinckx-Rice 4ef1d9fd8b
gnu: stunnel: Update to 5.46. 
* gnu/packages/web.scm (stunnel): Update to 5.46.
 2018-05-31 04:54:57 +02:00
Tobias Geerinckx-Rice 6c4d1413f2
gnu: mkvtoolnix: Use INVOKE. 
* gnu/packages/video.scm (mkvtoolnix)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:57 +02:00
Tobias Geerinckx-Rice 8d5960d1b1
gnu: liba52: Use INVOKE. 
* gnu/packages/video.scm (liba52)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:57 +02:00
Tobias Geerinckx-Rice 3103101ec9
gnu: aalib: Use INVOKE. 
* gnu/packages/video.scm (aalib)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:56 +02:00
Tobias Geerinckx-Rice d840f6b98a
gnu: xapian: Use INVOKE. 
* gnu/packages/search.scm (xapian)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:56 +02:00