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34791 Commits

Author SHA1 Message Date
Marius Bakke 81bf0fd0d4
gnu: julia: Update objconv input. 
* gnu/packages/julia.scm (julia)[inputs]: Update the hash of "objconv", which
does not have a stable URL.  Add a file name and use HTTPS while at it.
 2018-09-09 16:43:10 +02:00
Tobias Geerinckx-Rice b64e67ad40
gnu: cloc: Update to 1.78. 
* gnu/packages/code.scm (cloc): Update to 1.78.
[source]: Update URI.
 2018-09-09 15:01:55 +02:00
Tobias Geerinckx-Rice c2311644a5
gnu: signify: Update to 24. 
* gnu/packages/crypto.scm (signify): Update to 24.
 2018-09-09 15:01:54 +02:00
Tobias Geerinckx-Rice bb105673b8
gnu: musl: Update to 1.1.20. 
* gnu/packages/musl.scm (musl): Update to 1.1.20.
 2018-09-09 15:01:54 +02:00
Tobias Geerinckx-Rice bb5e06a35e
gnu: perl-pegex: Update to 0.67. 
* gnu/packages/perl.scm (perl-pegex): Update to 0.67.
 2018-09-09 15:01:54 +02:00
Tobias Geerinckx-Rice 9ad80992d0
gnu: perl-config-autoconf: Update to 0.317. 
* gnu/packages/perl.scm (perl-config-autoconf): Update to 0.317.
 2018-09-09 15:01:53 +02:00
Tobias Geerinckx-Rice 15dbc911f6
gnu: perl-extutils-installpaths: Update to 0.012. 
* gnu/packages/perl.scm (perl-extutils-installpaths): Update to 0.012.
 2018-09-09 15:01:53 +02:00
Tobias Geerinckx-Rice 4e77b75e11
gnu: perl-extutils-helpers: Update to 0.026. 
* gnu/packages/perl.scm (perl-extutils-helpers): Update to 0.026.
 2018-09-09 15:01:53 +02:00
Tobias Geerinckx-Rice 748e6e1271
gnu: perl-getopt-long-descriptive: Update to 0.103. 
* gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.103.
 2018-09-09 15:01:53 +02:00
Tobias Geerinckx-Rice 04fc0b9489
gnu: perl-namespace-clean: Update to 0.27. 
* gnu/packages/perl.scm (perl-namespace-clean): Update to 0.27.
 2018-09-09 15:01:52 +02:00
Tobias Geerinckx-Rice 49e63e3884
gnu: perl-datetime: Update to 1.50. 
* gnu/packages/perl.scm (perl-datetime): Update to 1.50.
 2018-09-09 15:01:52 +02:00
Tobias Geerinckx-Rice 2d32a6572d
gnu: perl-params-validate: Update to 1.29. 
* gnu/packages/perl.scm (perl-params-validate): Update to 1.29.
 2018-09-09 15:01:52 +02:00
Tobias Geerinckx-Rice a0fad0374e
gnu: links: Update to 2.17. 
* gnu/packages/web-browsers.scm (links): Update to 2.17.
 2018-09-09 15:01:52 +02:00
Tobias Geerinckx-Rice b9114ccbad
gnu: aircrack-ng: Update to 1.3. 
* gnu/packages/networking.scm (aircrack-ng): Update to 1.3.
[native-inputs]: Add autoconf, automake, libtool, and which.
[inputs]: Add libpcap.
[arguments]: Use conventional --options in #:configure-flags.
Restore ‘configure’ phase. Add ‘patch-evalrev’ and customise ‘bootstrap’
phases. Simplify ‘absolutize-tools’ phase.
 2018-09-09 14:50:34 +02:00
Tobias Geerinckx-Rice 6930ea33c9
gnu: aircrack-ng: Use HTTPS. 
* gnu/packages/networking.scm (aircrack-ng)[source, home-page]: Use HTTPS.
 2018-09-09 14:50:34 +02:00
宋文武 d7f99b3b76
gnu: perl: Improve description. 
Fixes <https://bug.gnu.org/32650>.

* gnu/packages/perl.scm (perl)[description]: Use description from 'perlintro'.
 2018-09-09 19:11:52 +08:00
Ludovic Courtès 4ab6a2f23d
tests: base: Add Guile-Gcrypt & co. to the search path. 
Fixes a regression introduced in
ca71942445, whereby (gcrypt hash) would
not be found in the system under test, leading to a failure of the
"/run/current-system is a GC root" test.

* gnu/tests/base.scm (run-basic-test)[guix&co]: New variable.
[test]: Add all of GUIX&CO to %LOAD-PATH.
 2018-09-08 23:02:01 +02:00
Ludovic Courtès 5dec93bb8b
gexp: 'file-union' accepts directory names. 
* guix/gexp.scm (file-union): Import (guix build utils).  Make the
parent directories of TARGET.
* tests/gexp.scm ("file-union"): New test.
 2018-09-08 23:02:01 +02:00
Ludovic Courtès e80c725db7
services: nginx: 'stop' returns #f. 
Previously we'd return #t, which the Shepherd would consider a failure
to stop the service.

* gnu/services/web.scm (nginx-shepherd-service): In 'nginx-action',
return #f when stopping the service.
 2018-09-08 23:02:00 +02:00
Ludovic Courtès 985975ae80
services: nginx: Don't read PID file when passed a custom config file. 
Fixes <https://bugs.gnu.org/32665>.

* gnu/services/web.scm (nginx-shepherd-service): Check whether FILE is
true and don't read the PID file if it is; use 'read-pid-file' instead
of a potentially endless loop.
 2018-09-08 23:02:00 +02:00
Jan Nieuwenhuizen c665774a1c
gnu: mes: Update to 0.17.1. 
* gnu/packages/patches/mes-nyacc-0.86.0.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mes.scm (mes): Update to 0.17.1, depend on latest Nyacc 0.86.0.
(nyacc-for-mes): Remove.
 2018-09-08 20:36:30 +02:00
Jan Nieuwenhuizen 445ecce923
gnu: nyacc: Update to 0.86.0. 
* gnu/packages/patches/nyacc-binary-literals.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mes.scm (nyacc): Update to 0.86.0, add patch.
 2018-09-08 20:36:30 +02:00
Benjamin Slade 39b5d8fd9d
gnu: Add frotz, frotz-dumb-terminal, and frotz-sdl. 
* gnu/packages/games.scm (frotz, frotz-dumb-terminal, frotz-sdl): New
variables.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2018-09-08 13:41:10 -04:00
Mark H Weaver 090e3768e8
gnu: linux-libre: Update to 4.18.6. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.6.
(%linux-libre-hash): Update hash.
 2018-09-07 21:05:14 -04:00
Mark H Weaver 4be8fdd3cc
gnu: linux-libre@4.14: Update to 4.14.68. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.68.
(%linux-libre-4.14-hash): Update hash.
 2018-09-07 21:03:03 -04:00
Mark H Weaver ddb419ce04
gnu: linux-libre@4.9: Update to 4.9.125. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.125.
 2018-09-07 21:02:30 -04:00
Mark H Weaver 48d17ba1d3
gnu: linux-libre@4.4: Update to 4.4.154. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.154.
 2018-09-07 21:01:48 -04:00
Ludovic Courtès 9b6c435564
services: 'instantiate-missing-services' reaches fixed point. 
Fixes a bug whereby services indirectly depended on would not be
automatically instantiated.

* gnu/services.scm (instantiate-missing-services): Loop back when the
length of ADJUSTED is greater than that of INSTANCES.
* tests/services.scm ("instantiate-missing-services, indirect"): New test.
 2018-09-07 23:00:39 +02:00
Ludovic Courtès 9f1f200c04
gnu: diffoscope: Update to 100. 
* gnu/packages/package-management.scm (diffoscope): Update to 100.
 2018-09-07 17:59:16 +02:00
Ludovic Courtès afdd1555c4
gnu: indent: Add version 2.2.12. 
* gnu/packages/code.scm (indent-2.2.12): New variable.
 2018-09-07 17:57:04 +02:00
Ludovic Courtès 6b4f99102c
gnu: gdb: Update to 8.2. 
* gnu/packages/gdb.scm (gdb): Update to 8.2.
 2018-09-07 17:55:55 +02:00
Ludovic Courtès 15214828a5
gnu: guile-json: Update to 1.2.0. 
* gnu/packages/guile.scm (guile-json): Update to 1.2.0.
[license]: Change to GPL3+.
 2018-09-07 17:55:51 +02:00
Ludovic Courtès da34a19f3a
guix describe: Display information about the current generation. 
* guix/scripts/describe.scm (display-profile-info)[number]: Use the
current generation number instead of the last generation number.
 2018-09-07 14:19:42 +02:00
Ludovic Courtès 2b73d82830
guix package: Record package provenance in manifest entries. 
* guix/profiles.scm (package->manifest-entry): Add #:properties and
honor it.
* guix/scripts/package.scm (package-provenance)
(package->manifest-entry*): New procedures.
(transaction-upgrade-entry, options->installable): Use
'package->manifest-entry*' instead of 'package->manifest-entry'.
 2018-09-07 11:40:25 +02:00
Ludovic Courtès bd7470185b
Add 'guix describe'. 
* guix/scripts/describe.scm: New file.
* Makefile.am (MODULES): Add it.
(SH_TESTS): Add tests/guix-describe.sh.
* po/guix/POTFILES.in: Add it.
* guix/scripts/pull.scm (display-profile-content): Export.
* guix/describe.scm (current-profile, current-profile-entries): Export.
* tests/guix-describe.sh: New file.
* doc/guix.texi (Features): Mention 'guix pull' and provenance tracking.
(Invoking guix pull): Link to 'guix describe'.
(Channels): Likewise.
(Invoking guix describe): New node.
 2018-09-07 11:40:22 +02:00
Ludovic Courtès ee94cfeb99
pull: Add '--profile'. 
* guix/scripts/pull.scm (show-help, %options): Add '--profile'.
(build-and-install): Change 'config-dir' argument to 'profile'.
(guix-pull): Honor '--profile'.
* doc/guix.texi (Invoking guix pull): Document it.
 2018-09-07 11:40:18 +02:00
pimi 214452ffd3
gnu: Add r-ggformula. 
* gnu/packages/cran.scm (r-ggformula): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-07 11:40:06 +02:00
pimi c61f7bc543
gnu: Add r-mosaiccore. 
* gnu/packages/cran.scm (r-mosaiccore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-07 11:40:06 +02:00
pimi 77b33e0ede
gnu: Add r-ggstance. 
gnu/packages/cran.scm (r-ggstance): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-07 11:40:06 +02:00
pimi 12da2a5e58
gnu: Add r-abctools. 
* gnu/packages/cran.scm (r-abctools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-07 11:40:06 +02:00
pimi cadc10a513
gnu: Add r-abcrf. 
* gnu/packages/cran.scm (r-abcrf): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-07 11:40:06 +02:00
pimi 40c10917bc
gnu: Add r-abcp2. 
* gnu/packages/cran.scm (r-abcp2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-07 11:40:06 +02:00
Alex Branham 12498b59e7
gnu: emacs-ess: Update to 17.11. 
* gnu/packages/emacs.scm (emacs-ess): Update to 17.11
[url]: Use github for https
[snippet]: update julia-mode substitution, only build info doc, bypass failing test
[propagated-inputs]: Add emacs-julia-mode
[description]: Mention that ESS supports Julia and JAGS (which replaces OpenBUGS)
[arguments]: Remove 'set-home' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-07 11:40:06 +02:00
Ludovic Courtès 1540075c79
vm: Make UUID computation really deterministic. 
Fixes <https://bugs.gnu.org/32652>.

* gnu/system/vm.scm (operating-system-uuid)[service-name,
file-system-digest]: New procedures.
Map these over services and file systems and hash the result.
* tests/guix-system.sh: Add test.
 2018-09-07 11:40:05 +02:00
Tobias Geerinckx-Rice 0012e0dd56
gnu: knot: Update to 2.7.2. 
* gnu/packages/dns.scm (knot): Update to 2.7.2.
 2018-09-07 03:01:40 +02:00
Leo Famulari 91cc2a38de
gnu: Wireshark: Update to 2.6.3 [fixes CVE-2018-{14994,16056,16057,16058}]. 
* gnu/packages/networking.scm (wireshark): Update to 2.6.3.
 2018-09-06 17:05:42 -04:00
Leo Famulari 1e066f0706
gnu: curl: Update replacement to 7.61.1 [fixes CVE-2018-14618]. 
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.61.1.
(curl-7.61.0): Replace variable with ...
(curl-7.61.1): ... new variable.
 2018-09-06 17:02:52 -04:00
Kei Kebreau 21f5f351fb
gnu: libgme: Update to 0.6.2. 
* gnu/packages/music.scm (libgme): Update to 0.6.2.
[native-inputs]: Add gcc-4.9.
 2018-09-06 11:01:52 -04:00
Ludovic Courtès fd3a64335d
doc: Update hpcguix-web configuration documentation. 
* doc/guix.texi (Web Services): Document 'channels' and
'package-list-expiration'.
 2018-09-06 13:53:04 +02:00
Ludovic Courtès 7df945656c
services: hpcguix-web: Set SSL_CERT_DIR. 
Previously Git pulls over HTTPS would fail with:

  guix/git.scm:132:7: In procedure update-cached-checkout:
  Throw to key `git-error' with args `(#<<git-error> code: -17 message: "the SSL certificate is invalid" class: 16>)'.

* gnu/services/web.scm (hpcguix-web-shepherd-service): Pass
"SSL_CERT_DIR=/etc/ssl/certs".
* doc/guix.texi (Web Services): Mention certificates.
 2018-09-06 13:49:06 +02:00