81fe131e0f
build: emacs-build-system: Make the install phase more helpful.
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Modify the install phase to detect when nothing has been installed, and error
if this happens. This is preferable to continuing, and allowing the next phase
to fail.
Also, when nothing can be found to be installed, print out each file that was
considered, along with the regular expressions that were used to include and
exclude it.
* gnu/build/emacs-build-system.scm (install-file?): Add additional error
checking and logging.
2017-09-01 22:00:44 +01:00
ebbb6301a3
gnu: r-minimal: Update to 3.4.1.
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* gnu/packages/statistics.scm (r-minimal): Update to 3.4.1.
2017-09-01 22:05:39 +02:00
3bf0245bb8
gnu: vdirsyncer: Update to 0.16.2.
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* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.2.
2017-09-01 13:54:23 -04:00
3a91ac8378
gnu: python-click-log: Update to 0.2.0.
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* gnu/packages/python.scm (python-click-log): Update to 0.2.0.
2017-09-01 13:54:23 -04:00
19ecdbedd3
gnu: python-click-threading: Update to 0.4.3.
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* gnu/packages/python.scm (python-click-threading): Update to 0.4.3.
[source]: Use pypi-uri.
2017-09-01 13:54:20 -04:00
2da21e48a8
gnu: python-icalendar: Update to 3.11.7.
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* gnu/packages/python.scm (python-icalendar): Update to 3.11.7.
2017-09-01 13:41:39 -04:00
81195d139f
gnu: r-genomicalignments: Update to 1.12.2.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.2.
2017-09-01 15:11:58 +02:00
89b620e7ee
gnu: r-tidyr: Update to 0.7.0.
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* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0.
[propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and
r-tidyselect.
2017-09-01 15:11:58 +02:00
c4a4ef39ed
gnu: Add r-tidyselect.
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* gnu/packages/statistics.scm (r-tidyselect): New variable.
2017-09-01 15:11:58 +02:00
db2e43863c
gnu: r-vegan: Update to 2.4-4.
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* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-4.
[native-inputs]: Remove r-knitr.
2017-09-01 15:11:57 +02:00
7b92acdf52
gnu: r-maldiquant: Update to 1.16.4.
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* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.16.4.
2017-09-01 15:11:57 +02:00
6bd27981f6
gnu: r-bookdown: Update to 0.5.
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* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.5.
2017-09-01 15:11:56 +02:00
c62276b2fa
gnu: r-ksamples: Update to 1.2-7.
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* gnu/packages/cran.scm (r-ksamples): Update to 1.2-7.
2017-09-01 15:11:56 +02:00
28f2f89391
gnu: r-distillery: Update to 1.0-4.
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* gnu/packages/cran.scm (r-distillery): Update to 1.0-4.
2017-09-01 15:11:55 +02:00
f7b172187a
gnu: r-sp: Update to 1.2-5.
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* gnu/packages/cran.scm (r-sp): Update to 1.2-5.
2017-09-01 15:11:55 +02:00
bf958fcd63
gnu: r-ggally: Update to 1.3.2.
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* gnu/packages/cran.scm (r-ggally): Update to 1.3.2.
2017-09-01 15:11:55 +02:00
38ea6cfab4
gnu: r-reshape: Update to 0.8.7.
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* gnu/packages/cran.scm (r-reshape): Update to 0.8.7.
2017-09-01 15:11:54 +02:00
eeb5432802
gnu: r-powerlaw: Update to 0.70.1.
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* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.1.
2017-09-01 15:11:54 +02:00
a5c2980486
gnu: r-circlize: Update to 0.4.1.
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* gnu/packages/cran.scm (r-circlize): Update to 0.4.1.
2017-09-01 15:11:54 +02:00
ea4d4f7616
gnu: r-shape: Update to 1.4.3.
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* gnu/packages/cran.scm (r-shape): Update to 1.4.3.
2017-09-01 15:11:53 +02:00
9077f6d9aa
gnu: r-tclust: Update to 1.3-1.
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* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
2017-09-01 15:11:53 +02:00
347cab66b6
gnu: r-fastcluster: Update to 1.1.24.
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* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
2017-09-01 15:11:52 +02:00
d574d6bcc2
gnu: r-rcpparmadillo: Update to 0.7.960.1.2.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
2017-09-01 15:11:52 +02:00
2dda8fca6f
gnu: r-plotrix: Update to 3.6-6.
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* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
2017-09-01 15:11:51 +02:00
7d60652ebe
gnu: r-httr: Update to 1.3.1.
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* gnu/packages/statistics.scm (r-httr): Update to 1.3.1.
[propagated-inputs]: Remove r-digest and r-stringr.
2017-09-01 15:11:51 +02:00
e3323e0707
gnu: r-commonmark: Update to 1.4.
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* gnu/packages/statistics.scm (r-commonmark): Update to 1.4.
2017-09-01 15:11:51 +02:00
5d84369bda
gnu: r-ade4: Update to 1.7-8.
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* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8.
2017-09-01 15:11:50 +02:00
fb10c923b3
gnu: r-tibble: Update to 1.3.4.
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* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4.
2017-09-01 15:11:50 +02:00
edd5fd7208
gnu: r-rlang: Update to 0.1.2.
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* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2.
2017-09-01 15:11:49 +02:00
5a00ef0950
gnu: r-knitr: Update to 1.17.
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* gnu/packages/statistics.scm (r-knitr): Update to 1.17.
2017-09-01 15:11:49 +02:00
3949aef601
gnu: r-bh: Update to 1.65.0-1.
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* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1.
2017-09-01 15:11:49 +02:00
b93881b9c5
gnu: r-scales: Update to 0.5.0.
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* gnu/packages/statistics.scm (r-scales): Update to 0.5.0.
[propagated-inputs]: Add r-r6 and r-viridislite.
2017-09-01 15:11:48 +02:00
2d99a31607
gnu: r-mgcv: Update to 1.8-19.
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* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19.
2017-09-01 15:11:48 +02:00
fefe9f4753
gnu: r-matrix: Update to 1.2-11.
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* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11.
2017-09-01 15:11:48 +02:00
3c2a5bf299
gnu: r-servr: Update to 0.7.
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* gnu/packages/web.scm (r-servr): Update to 0.7.
2017-09-01 15:11:47 +02:00
1cf306639c
gnu: php: Update to 7.1.9.
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* gnu/packages/php.scm (php): Update to 7.1.9.
2017-09-01 14:17:46 +02:00
dcf7a8a660
gnu: java-slf4j-api: Fix tests.
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* gnu/packages/java.scm (java-slf4j-api)[arguments]: Enable tests
Adjust the jar content to prevent a test failure.
2017-09-01 14:17:24 +02:00
5fe2a139df
gnu: djvulibre: Remove timestamps from .svgz files.
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* gnu/packages/djvu.scm (djvulibre)[arguments]: New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01 11:05:32 +02:00
833ade67f1
gnu: Add emacs-tuareg.
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* gnu/packages/ocaml.scm (emacs-tuareg): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01 10:39:55 +02:00
4735393a76
gnu: emacs-ebuild-mode: Update to 1.37.
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* gnu/packages/emacs.scm (emacs-ebuild-mode): Update to 1.37.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01 10:34:50 +02:00
ab966b8f61
gnu: Add emacs-2048-game.
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* gnu/packages/emacs.scm (emacs-2048-game): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01 10:34:36 +02:00
5c5ae46c00
packages: 'fold-packages' takes an optional 'modules' parameter.
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Suggested by Christopher Baines <mail@cbaines.net>.
* gnu/packages.scm (fold-packages): Add optional 'modules' parameter and
honor it.
2017-09-01 10:29:39 +02:00
fe55199542
scripts: Remove 'max-silent-time' from the default options.
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Fixes <http://bugs.gnu.org/27157 >.
Having a finite default `max-silent-time' value for scripts such as 'guix
environment' could lead to timeouts when building subtitutes; this was
undesirable.
This change also fixes client behavior to match the documentation, which
is that by default the daemon's settings are honored.
* guix/scripts/archive.scm (%default-options): Remove max-silent-time entry.
* guix/scripts/copy.scm (%default-options): Likewise.
* guix/scripts/environment.scm (%default-options): Likewise.
* guix/scripts/pack.scm (%default-options): Likewise.
* guix/scripts/package.scm (%default-options): Likewise.
* guix/scripts/pull.scm (%default-options): Likewise.
* guix/scripts/system.scm (%default-options): Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01 10:29:39 +02:00
75690c9f6b
gnu: r-rcas: Correct license.
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* gnu/packages/bioinformatics.scm (r-rcas)[license]: Use correct license.
2017-09-01 10:26:31 +02:00
eda8f36cd6
gnu: r-rcas: Update to 1.3.3.
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* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.3.3.
2017-09-01 10:26:30 +02:00
7d099cbe13
gnu: mysql: Enable tests on aarch64.
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* gnu/packages/databases.scm (mysql)[arguments]: Remove logic disabling
the tests on aarch64-linux.
2017-09-01 10:50:39 +03:00
f4bf420c84
gnu: vsearch: Update to 2.4.4.
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* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.4.
2017-09-01 14:45:57 +08:00
25bd1fc1c1
gnu: metabat: Update to 2.12.1.
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* gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1.
[source]: Remove it. Use url-fetch.
2017-09-01 14:45:57 +08:00
43d01672a1
gnu: netcdf: Fix reproducibility issue; remove unneeded references.
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* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded
'Configured On' date; truncate reference to compiler store item.
2017-09-01 08:34:32 +02:00
e464b4550e
gnu: hdf4: Avoid unneeded store references to compilers.
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* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to
truncate hashes of compiler store items.
2017-09-01 08:34:32 +02:00
Christopher Baines