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10885 Commits

Author SHA1 Message Date
Leo Famulari 85267efb2a gnu: libssh: Update to 0.7.3 [fixes CVE-2016-0739]. 
* gnu/packages/patches/libssh-CVE-2014-0017.patch: Delete file.
* gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.7.3.
  (libssh-0.5): Rename to...
  (libssh-0.6): ... this.  Update to 0.6.5.
  [source]: Add patch for CVE-2016-0739.
  (guile-ssh)[inputs]: Use libssh-0.6.

Modified-By: Mark H Weaver <mhw@netris.org>
 2016-02-24 16:32:09 -05:00
Leo Famulari 78d80c5c6a gnu: libssh2: Update to 1.7.0 [fixes CVE-2016-0787]. 
* gnu/packages/ssh.scm (libssh2): Update to 1.7.0.
  (libssh2-1.4): New variable.
* gnu/packages/curl.scm (curl)[inputs]: Use libssh4-1.4.

Modified-By: Mark H Weaver <mhw@netris.org>
 2016-02-24 16:32:08 -05:00
George Clemmer c8e26887ed doc: Add details for binary installation. 
* doc/guix.texi (Binary Installation): Provide some more details for binary
  installation, in particular automatic starting of the daemon.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-02-24 22:00:07 +01:00
Chris Marusich a40424bd11 doc: Fix minor typos and add missing words. 
* doc/guix.texi (Shepherd Services): Add missing words.
  (Invoking guix system): Fix typo.
  (Service Types and Services): Fix typo.
* doc/contributing.texi (Submitting Patches): Fix typo.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-02-24 21:34:30 +01:00
Efraim Flashner a49332a0c0 gnu: gdb: Update to 7.11. 
* gnu/packages/gdb.scm (gdb): Update to 7.11.
 2016-02-24 20:52:12 +02:00
Efraim Flashner c73210d7a9 gnu: kde-frameworks: Update to 5.19.0. 
* gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.19.0.
(extra-cmake-modules): Update to 5.19.0.
 2016-02-24 20:25:25 +02:00
Ricardo Wurmus 6d415db23d gnu: r-topgo: Add missing input. 
* gnu/packages/bioinformatics.scm (r-topgo)[propagated-inputs]: Add
  "r-graph".
 2016-02-24 17:36:55 +01:00
Ricardo Wurmus d1dbde6ac1 gnu: Add r-graph. 
* gnu/packages/bioinformatics.scm (r-graph): New variable.
 2016-02-24 17:36:55 +01:00
Ricardo Wurmus e761beb9a9 gnu: Add r-org-mm-eg-db. 
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): New variable.
 2016-02-24 17:26:39 +01:00
Ricardo Wurmus 16c53a1e26 gnu: Add r-org-dm-eg-db. 
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): New variable.
 2016-02-24 17:26:39 +01:00
Ricardo Wurmus fefedf98cb gnu: Add r-org-ce-eg-db. 
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): New variable.
 2016-02-24 17:26:39 +01:00
Ricardo Wurmus 486da49143 gnu: Add r-org-hs-eg-db. 
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
 2016-02-24 17:26:39 +01:00
Alex Kost 6caa4dfa37 Do not check package freshness during upgrade. 
Fixes <http://bugs.gnu.org/22740>.
Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages.scm (waiting, ftp-open*, check-package-freshness): Remove.
* guix/scripts/package.scm (options->installable): Adjust accordingly.
* emacs/guix-main.scm (package->manifest-entry*): Likewise.
 2016-02-24 18:24:16 +03:00
Ludovic Courtès 4d459d8734 publish: Move 'query-path-info' call where it belongs. 
* guix/scripts/publish.scm (narinfo-string): Remove 'path-info'
parameter and add 'store' parameter.  Call 'query-path-info'.
(render-narinfo): Adjust accordingly.
 2016-02-24 13:11:50 +01:00
Ludovic Courtès da35acf91d gnu: lsh: lshd now supports X11 forwarding. 
Reported by myglc2 <myglc2@gmail.com>.

* gnu/packages/lsh.scm (lsh)[inputs]: Add XAUTH.
[arguments]: Modify 'XAUTH_PROGRAM' macro in 'server_x11.c'.
 2016-02-24 13:11:50 +01:00
Ludovic Courtès 03b93ed70e gnu: lsh: Use 'modify-phases'. 
* gnu/packages/lsh.scm (lsh)[arguments]: Use 'modify-phases' instead of
'alist-cons-before'.
 2016-02-24 13:11:50 +01:00
Andy Wingo ea84bd88da gnu: services: Install policies for polkit service. 
* gnu/services/desktop.scm (polkit-etc-files): Add the polkit package
  itself to the list of packages to scan for .policy files.  This add
  support for pkexec.
 2016-02-24 10:16:54 +01:00
Efraim Flashner ebde7c7a9b mplayer: Use 'modify-phases'. 
* gnu/packages/video.scm (mplayer)[arguments]: Use 'modify-phases'.
[source]: Use https.
[home-page]: Use https.
 2016-02-24 10:33:05 +02:00
Efraim Flashner 778a6a8bf0 gnu: mplayer: Add codecs. 
* gnu/packages/video.scm (mplayer)[inputs]: Add libass, libmpeg2,
  libvdpau, libx264, opus.
 2016-02-24 09:43:51 +02:00
Efraim Flashner dec3e015eb gnu: dropbear: Update to 2015.71. 
* gnu/packages/ssh.scm (dropbear): Update to 2015.71.
 2016-02-24 09:18:14 +02:00
David Thompson dd90ed892a gnu: guile-next: Set correct native search paths. 
* gnu/packages/guile.scm (guile-next): Use the "2.2" directory for the
  load paths.
 2016-02-23 19:39:56 -05:00
Ludovic Courtès f2d8faff04 services: herd: Add missing newlines in error messages. 
* gnu/services/herd.scm (report-action-error): Add missing newlines in
messages.
 2016-02-23 13:03:23 +01:00
Ludovic Courtès 305b58c05c refresh: Remove unneeded import. 
Reported by Leo Famulari <leo@famulari.name>
and Ben Woodcroft <b.woodcroft@uq.edu.au>
at <http://bugs.gnu.org/22752>.

* guix/scripts/refresh.scm: Remove unneeded and harmful import of (guix
import gem).
 2016-02-23 12:58:25 +01:00
Ludovic Courtès 561360a589 doc: Add example of VCS-snapshot version numbers. 
* doc/guix.texi (Version Numbers): Add example for VCS version numbers.
 2016-02-23 12:45:25 +01:00
Andreas Enge 5a179844e7 gnu: Add xfce4-xkb-plugin. 
* gnu/packages/xfce.scm (xfce4-xkb-plugin): New variable.
  (xfce)[propagated-inputs]: Add it.
 2016-02-23 11:53:03 +01:00
Leo Famulari 8758efe0b0 gnu: telepathy-logger: Disable parallel tests. 
* gnu/packages/freedesktop.scm (telepathy-logger)[arguments]: Disable parallel
tests.
 2016-02-23 01:53:47 -05:00
Roel Janssen c1fc7a67e4 gnu: Add rdmd. 
* gnu/packages/ldc.scm (rdmd): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-23 01:27:19 -05:00
Leo Famulari e9f68a647d gnu: modem-manager: Use HTTPS URL. 
* gnu/packages/freedesktop.scm (modem-manager)[source]: Use HTTPS URL.
 2016-02-23 00:15:05 -05:00
Leo Famulari fae58fe1d1 gnu: mpd: Update to 0.19.12. 
* gnu/packages/mpd.scm (mpd): Update t0 0.19.12.
 2016-02-22 20:16:25 -05:00
Leo Famulari a4c7c57c2c gnu: ncmpcpp: Udate to 0.7.3. 
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.3.
[inputs]: Add icu4c.
 2016-02-22 20:16:25 -05:00
Leo Famulari 9913c78a09 gnu: ncmpcpp: Use 'modify-phases'. 
* gnu/packages/mpd.scm (ncmpcpp)[arguments]: Use 'modify-phases'.
 2016-02-22 20:16:25 -05:00
Christopher Allan Webber 944d2b17b5 vm: Only pass "-enable-kvm" to qemu if /dev/kvm is present. 
Fixes <http://bugs.gnu.org/22633>.

* gnu/build/vm.scm (load-in-linux-vm): Only pass "-enable-kvm" flag to qemu
  if "/dev/kvm" is present.
* gnu/system/vm.scm (common-kvm-options): Same as above.
 2016-02-22 13:28:58 -08:00
Ludovic Courtès 8b16a5e199 gnu: pkg-config: Add non-HTTPS alternate URL. 
* gnu/packages/pkg-config.scm (%pkg-config)[source]: Add non-HTTPS URL.
 2016-02-22 22:11:37 +01:00
Ludovic Courtès b0fef4d660 grafts: 'name' parameter of 'graft-derivation' is now optional. 
* guix/grafts.scm (graft-derivation): Name 'name' a keyword parameter.
* guix/packages.scm (package-derivation, package-cross-derivation):
Adjust accordingly.
* tests/grafts.scm ("graft-derivation"): Likewise.
* tests/packages.scm ("package-derivation, indirect grafts"): Likewise.
 2016-02-22 22:11:37 +01:00
Ludovic Courtès 7adf9b8469 derivations: Move grafts to (guix grafts). 
* guix/derivations.scm (<graft>, graft-derivation, %graft?)
(set-grafting): Move to...
* guix/grafts.scm: ... here.  New file.
* guix/gexp.scm, guix/packages.scm, tests/packages.scm,
guix/scripts/build.scm: Use it.
* Makefile.am (MODULES): Add it.
(SCM_TESTS): Add tests/grafts.scm.
* tests/derivations.scm ("graft-derivation"): Move to...
* tests/grafts.scm: ... here.  New file.
 2016-02-22 22:11:37 +01:00
Andreas Enge 3297deedd1 gnu: Remove python2-pyqt-4. 
* gnu/packages/qt.scm (python2-pyqt-4): Delete variable. It depends on Qt 4,
  which does not receive security updates any more.
 2016-02-22 21:33:29 +01:00
Andreas Enge dbbb45dd73 gnu: Remove KDE 4. 
* gnu/packages/kde.scm (qjson): Move from here...
* gnu/packages/qt.scm (qjson): ...to here.
* gnu/packages/pumpio.scm: Drop inclusion of (gnu packages kde).
* gnu/packages/kde.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Unregister it.
* gnu/packages/rdf.scm (soprano): Delete variable.

KDE 4 relies on Qt 4, which does not receive security updates any more.
 2016-02-22 21:30:56 +01:00
Efraim Flashner 5ad87e5bb5 gnu: python-patsy: Define 'python2-variant'. 
* gnu/packages/statistics.scm (python-patsy)[properties]: New field.
(python2-patsy): Use 'strip-python2-variant'.
 2016-02-22 21:59:02 +02:00
Efraim Flashner f4cd2ceabd gnu: python-patsy: Update to 0.4.1. 
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Update to 0.4.1.
 2016-02-22 21:59:02 +02:00
Alex Kost 260795b736 emacs: Do not allow a user to modify system profiles. 
Fixes <http://bugs.gnu.org/22607>.
Reported by myglc2 <myglc2@gmail.com>.

Remove possibilities to install/delete packages to/from a system profile
both for "Package List" and "Package Info" buffers.

* emacs/guix-profiles.el (guix-system-profile-regexp): New variable.
(guix-system-profile?): New procedure.
* emacs/guix-ui-package.el (guix-package-info-insert-output): Do not
display "Install"/"Delete" button for a system profile.
(guix-package-assert-non-system-profile): New procedure.
(guix-package-execute-actions): Use it.
 2016-02-22 22:36:35 +03:00
Alex Kost 0338132e65 emacs: Set 'guix-buffer-item' before displaying entries. 
* emacs/guix-buffer.el (guix-buffer-set): Set 'guix-buffer-item' early,
  so that it can be used during displaying entries.  For example, this
  allows us to use a value of the current guix profile when package
  entries are inserted in a "List" or "Info" buffer.
 2016-02-22 22:29:56 +03:00
Alex Kost cfb1c62aa9 emacs: Add 'M-x guix-installed-{user/system}-packages'. 
* emacs/guix-ui-package.el (guix-installed-user-packages)
(guix-installed-system-packages): New commands.
* doc/emacs.texi (Emacs Commands): Document them.
 2016-02-22 22:17:16 +03:00
Mark H Weaver 5879f0d649 gnu: qemu: Add fixes for CVE-2015-8619, CVE-2016-1981, CVE-2016-2197. 
* gnu/packages/patches/qemu-CVE-2015-8619.patch,
  gnu/packages/patches/qemu-CVE-2016-1981.patch,
  gnu/packages/patches/qemu-CVE-2016-2197.patch,
  gnu/packages/patches/qemu-usb-ehci-oob-read.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
 2016-02-22 10:26:22 -05:00
Rene Saavedra b784b1a9ea gnu: Add gnome-screenshot. 
* gnu/packages/gnome.scm (gnome-screenshot): New variable.
 2016-02-22 19:57:35 +08:00
Roel Janssen 8b15f42c73 gnu: libotf: Use mirror:// URL. 
* gnu/packages/fontutils.scm (libotf): Use mirror://savannah URL.
 2016-02-22 19:57:35 +08:00
Efraim Flashner 066651d412 gnu: c-ares: Update to 1.11.0. 
* gnu/packages/adns.scm (c-ares): Update to 1.11.0.
 2016-02-22 10:43:17 +02:00
Leo Famulari 1034331a11 gnu: parallel: Update to 20160122. 
* gnu/packages/parallel.scm (parallel): Update to 20160122.
 2016-02-22 02:31:38 -05:00
Leo Famulari 50a7963aeb gnu: python-acme: Generate and install documentation. 
* gnu/packages/tls.scm (acme)[arguments]: Add 'docs' phase.
[native-inputs]: Add python-sphinx, python-sphinxcontrib-programoutput,
python-sphinx-rtd-theme, python-setuptools, texinfo.
 2016-02-22 00:40:25 -05:00
Leo Famulari f9263d9a90 gnu: letsencrypt: Generate and install documentation. 
* gnu/packages/tls.scm (letsencrypt)[arguments]: Add 'docs' phase.
[native-inputs]: Add python2-sphinx, python2-sphinx-rtd-theme,
python2-sphinx-repoze-autointerface,
python2-sphinxcontrib-programoutput, texinfo.
 2016-02-22 00:40:25 -05:00
Leo Famulari 548d716539 gnu: Add python-sphinx-repoze-autointerface. 
* gnu/packages/python.scm (python-sphinx-repoze-autointerface,
python2-sphinx-repoze-autointerface): New variables.
 2016-02-22 00:40:25 -05:00