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41361 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice 882d579d3f
gnu: dcmtk: Update to 3.6.4. 
* gnu/packages/image-processing.scm (dcmtk): Update to 3.6.4.
[inputs]: Add libjpeg.  Order alphabetically.  Move doxygen…
[native-inputs]: …here.  Remove perl.  Order alphabetically.
 2019-03-19 16:57:44 +01:00
Tobias Geerinckx-Rice d2ad4f2e00
gnu: dcmtk: Use HTTPS home page. 
* gnu/packages/image-processing.scm (dcmtk)[home-page]: Use HTTPS.
 2019-03-19 16:57:44 +01:00
Pierre Neidhardt c0aaca02c7
gnu: Add emacs-helm-wikipedia. 
* gnu/packages/emacs-xyz.scm (emacs-helm-wikipedia): New variable.
 2019-03-19 15:55:08 +01:00
Pierre Neidhardt 2390e0d4d6
gnu: emacs-evil-collection: Update to 20190319. 
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20190319.
 2019-03-19 14:55:06 +01:00
Rutger Helling f20c64ed0b
gnu: scanmem: Enable GUI frontend. 
* gnu/packages/debug.scm (scanmem): Enable GUI frontend.
[arguments]: Add "--enable-gui" configure flag and 'hardcode-python,
'wrap-gameconqueror phases.
[native-inputs]: Add python-wrapper, gobject-introspection, gtk+.
[propogated-inputs]: Add python-pygobject.
 2019-03-19 13:59:40 +01:00
Ricardo Wurmus c5542196d5
gnu: nanopolish: Use python-wrapper. 
* gnu/packages/bioinformatics.scm (nanopolish)[inputs]: Replace "python" with
"python-wrapper" as scripts require "python" executable.
 2019-03-19 13:30:41 +01:00
Ricardo Wurmus 7c1685e9d8
gnu: nanopolish: Remove bundled library sources. 
* gnu/packages/bioinformatics.scm (nanopolish)[source]: Add snippet to remove
bundled htslib sources.
 2019-03-19 13:30:41 +01:00
Tobias Geerinckx-Rice cf31179062
gnu: hyperledger-fabric: Use git tag. 
* gnu/packages/hyperledger.scm (hyperledger-fabric)[source]: Check out
the (supposedly immutable) tag instead of the (maintenance) branch.
 2019-03-19 12:22:18 +01:00
Clément Lassieur 3e0df6cd4a
gnu: Add emacs-org-re-reveal. 
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): New variable.
 2019-03-19 11:32:30 +01:00
Clément Lassieur dfb49d7820
gnu: emacs-org-reveal: Update to 1cdd088. 
* gnu/packages/emacs-xyz.scm (emacs-org-reveal): Update to 1cdd088.
 2019-03-19 11:32:30 +01:00
Clément Lassieur 6e4a5b9e37
gnu: emacs-org-reveal: Use git-version and git-file-name. 
* gnu/packages/emacs-xyz.scm (emacs-org-reveal)[version]: Use git-version.
[source]: Use git-file-name.
 2019-03-19 11:32:30 +01:00
nee 4790365308
gnu: Add edgar. 
* gnu/packages/games.scm (edgar): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-19 11:30:34 +01:00
Dan Frumin 718d358a72
gnu: coq-flocq: remove unnecessary return values 
* gnu/packages/coq.scm (coq-flocq)[arguments]: Add unnecessary return
values after 'invoke' calls.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-19 11:30:34 +01:00
Ludovic Courtès 6c5e618ca0
pack: Create an empty /home directory for '-f squashfs'. 
Fixes <https://bugs.gnu.org/34914>.

* guix/scripts/pack.scm (squashfs-image)[build]: Pass "-p /home d 555 0 0".
 2019-03-19 11:30:34 +01:00
Ludovic Courtès 427c87d0bd
pack: Produce relative symlinks when using '-f squashfs'. 
Fixes <https://bugs.gnu.org/34913>.

* guix/scripts/pack.scm (squashfs-image)[build]: Use
'relative-file-name' when creating SYMLINKS.
* guix/scripts/pack.scm (guix-pack): Pass #:relative-symlinks? #t when
PACK-FORMAT is 'squashfs.
 2019-03-19 11:30:34 +01:00
Andreas Enge 1d6589db81
gnu: Add python-flint. 
* gnu/packages/algebra.scm (python-flint): New variable.
* gnu/packages/patches/python-flint-includes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the patch.
 2019-03-19 10:45:17 +01:00
Efraim Flashner 835dada6e4
gnu: Add rtv. 
* gnu/packages/syndication.scm (rtv): New variable.
 2019-03-19 08:48:33 +02:00
Efraim Flashner 9569db373c
gnu: Add python-vcrpy. 
* gnu/packages/python-check.scm (python-vcrpy): New variable.
 2019-03-19 08:48:29 +02:00
Leo Famulari 5cfe7ad870
gnu: MPD: Update to 0.21.6. 
* gnu/packages/mpd.scm (mpd): Update to 0.21.6.
 2019-03-18 20:29:25 -04:00
Tobias Geerinckx-Rice 8f350d83a4
gnu: autorandr: Fix typo in synopsis. 
* gnu/packages/xdisorg.scm (autorandr)[synopsis]: Fix typo.
 2019-03-18 23:52:42 +01:00
Ricardo Wurmus 9e1d9a0a46
gnu: python-biom-format: Fix build. 
* gnu/packages/bioinformatics.scm (python-biom-format)[source]: Remove
generated C files.
[arguments]: Disable second broken test.
 2019-03-18 23:46:27 +01:00
Ricardo Wurmus 0fa926c2e5
gnu: python-pyarrow: Update to 0.10.0. 
* gnu/packages/databases.scm (python-pyarrow): Update to 0.10.0.
[arguments]: Delete "build" phase.
[native-inputs]: Add python-pytest-runner.
 2019-03-18 23:46:27 +01:00
Ricardo Wurmus e58d3a5926
gnu: apache-arrow: Update to 0.10.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 0.10.0.
[inputs]: Replace jemalloc-4.5.0 with jemalloc.
 2019-03-18 23:46:27 +01:00
Tobias Geerinckx-Rice cdfea208b8
gnu: dav1d: Update to 0.2.1. 
* gnu/packages/video.scm (dav1d): Update to 0.2.1.
 2019-03-18 23:42:49 +01:00
Tobias Geerinckx-Rice 362f5306e4
gnu: st: Update to 0.8.2. 
* gnu/packages/suckless.scm (st): Update to 0.8.2.
[arguments]: Re-indent.
 2019-03-18 23:42:48 +01:00
Tobias Geerinckx-Rice 4b886fb00c
gnu: darktable: Update to 2.6.1. 
* gnu/packages/photo.scm (darktable): Update to 2.6.1.
 2019-03-18 23:42:48 +01:00
Tobias Geerinckx-Rice 9081333bcd
gnu: cracklib: Update to 2.9.7. 
* gnu/packages/password-utils.scm (cracklib): Update to 2.9.7.
[source]: Remove patches.
* gnu/packages/patches/cracklib-CVE-2016-6318.patch,
gnu/packages/patches/cracklib-fix-buffer-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2019-03-18 23:42:48 +01:00
Tobias Geerinckx-Rice ef501bb105
gnu: speedtest-cli: Update to 2.1.1. 
* gnu/packages/networking.scm (speedtest-cli): Update to 2.1.1.
 2019-03-18 23:42:47 +01:00
Tobias Geerinckx-Rice 0a8c2c98fb
gnu: ntp: Update to 4.2.8p13. 
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p13.
 2019-03-18 23:42:47 +01:00
Tobias Geerinckx-Rice d7caf8b8cd
gnu: setbfree: Update to 0.8.8. 
* gnu/packages/music.scm (setbfree): Update to 0.8.8.
 2019-03-18 23:42:47 +01:00
Nicolas Goaziou 5dfbf5620c
gnu: Add emacs-xr. 
* gnu/packages/emacs-xyz.scm (emacs-xr): New variable.
 2019-03-18 23:35:32 +01:00
Andreas Enge 402db5113f
gnu: arb: Update to 2.16.0. 
* gnu/packages/algebra.scm (arb): Update to 2.16.0.
 2019-03-18 23:22:33 +01:00
Tobias Geerinckx-Rice 01d7cafeef
gnu: bwm-ng: Update to 0.6.2. 
* gnu/packages/networking.scm (bwm-ng): Update to 0.6.2.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
[arguments]: Add ‘disable-premature-./configure’ phase.
[native-inputs]: Add autoconf and automake.
 2019-03-18 22:17:37 +01:00
Tobias Geerinckx-Rice 223ef546df
gnu: proxychains-ng: Update to 4.14. 
* gnu/packages/networking.scm (proxychains-ng): Update to 4.14.
 2019-03-18 22:17:37 +01:00
Tobias Geerinckx-Rice 110387f894
gnu: proxychains-ng: Don't use NAME in source URI. 
* gnu/packages/networking.scm (proxychains-ng)[source]: Hard-code NAME.
 2019-03-18 22:17:37 +01:00
Tobias Geerinckx-Rice b2c52fc9ff
gnu: petsc: Update to 3.10.4. 
* gnu/packages/maths.scm (petsc): Update to 3.10.4.
 2019-03-18 22:17:37 +01:00
Tobias Geerinckx-Rice 886e97725d
gnu: bitlbee-discord: Update to 0.4.2. 
* gnu/packages/messaging.scm (bitlbee-discord): Update to 0.4.2.
 2019-03-18 22:17:36 +01:00
Tobias Geerinckx-Rice d1ef0e024f
gnu: bitlbee-discord: Don't use unstable tarball. 
* gnu/packages/messaging.scm (bitlbee-discord)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-18 22:17:36 +01:00
Tobias Geerinckx-Rice 0e36b2b7d0
gnu: gnuplot: Update to 5.2.6. 
* gnu/packages/maths.scm (gnuplot): Update to 5.2.6.
 2019-03-18 22:17:36 +01:00
Ricardo Wurmus 6e42cef0ab
gnu: Add bbmap. 
* gnu/packages/bioinformatics.scm (bbmap): New variable.
 2019-03-18 21:35:57 +01:00
Ricardo Wurmus 43ec3b68e5
gnu: padthv1: Update to 0.9.6. 
* gnu/packages/music.scm (padthv1): Update to 0.9.6.
 2019-03-18 21:35:57 +01:00
Ricardo Wurmus 1540d80d9f
gnu: samplv1: Update to 0.9.6. 
* gnu/packages/music.scm (samplv1): Update to 0.9.6.
 2019-03-18 21:35:56 +01:00
Ricardo Wurmus c0541ba822
gnu: drumkv1: Update to 0.9.6. 
* gnu/packages/music.scm (drumkv1): Update to 0.9.6.
 2019-03-18 21:35:56 +01:00
Ricardo Wurmus 1b80ed7d5b
gnu: synthv1: Update to 0.9.6. 
* gnu/packages/music.scm (synthv1): Update to 0.9.6.
 2019-03-18 21:35:56 +01:00
Tobias Geerinckx-Rice 31f6c6123b
gnu: ngircd: Update to 25. 
* gnu/packages/messaging.scm (ngircd): Update to 25.
 2019-03-18 21:20:32 +01:00
Tobias Geerinckx-Rice 98a5cd51b3
gnu: ipopt: Update to 3.12.12. 
* gnu/packages/maths.scm (ipopt): Update to 3.12.12.
 2019-03-18 21:20:31 +01:00
Tobias Geerinckx-Rice b520a00d32
gnu: lua-sec: Update to 0.7. 
* gnu/packages/lua.scm (lua-sec, lua5.1-sec, lua5.2-sec): Update to 0.7.
 2019-03-18 21:20:31 +01:00
Leo Famulari bf197dcda0
gnu: Go 1.11: Update to 1.11.6. 
* gnu/packages/golang.scm (go-1.11): Update to 1.11.6.
[arguments]: Remove the 'tarbomb-workaround' phase and inherit the 'chdir'
phase.
 2019-03-18 16:10:48 -04:00
Katherine Cox-Buday 18199da4b7
gnu: Add Go 1.12. 
* gnu/packages/golang.scm (go-1.12): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-18 16:10:44 -04:00
Tobias Geerinckx-Rice aef4c482a3
gnu: mailutils: Add SEARCH CHARSET support. 
* gnu/packages/mail.scm (mailutils)[inputs]: Add libiconv and libunistring.
 2019-03-18 21:08:20 +01:00