Commit Graph

8809 Commits

Author SHA1 Message Date
Efraim Flashner 05b9c00e59
gnu: qca: Build with qtbase.
* gnu/packages/kde.scm (qca)[inputs]: Remove qt, add qtbase.
2016-07-07 12:23:39 +03:00
Efraim Flashner 4742c4decc
gnu: Add qtscript.
* gnu/packages/qt.scm (qtscript): New variable.
2016-07-07 12:23:39 +03:00
Ricardo Wurmus 66cf0f054d
gnu: Add r-domc.
* gnu/packages/statistics.scm (r-domc): New variable.
2016-07-07 10:46:39 +02:00
Ricardo Wurmus 9003957e53
gnu: Add r-multitaper.
* gnu/packages/statistics.scm (r-multitaper): New variable.
2016-07-07 10:46:30 +02:00
Ricardo Wurmus 274da826f9
gnu: Add r-seqinr.
* gnu/packages/bioinformatics.scm (r-seqinr): New variable.
2016-07-07 10:46:17 +02:00
Ricardo Wurmus fdd0f7b2a3
gnu: Add r-ade4.
* gnu/packages/statistics.scm (r-ade4): New variable.
2016-07-07 10:46:05 +02:00
Efraim Flashner 939cf41c3f
gnu: python-oslosphinx: Update to 4.3.0.
* gnu/packages/openstack.scm (python-oslosphinx): Update to 4.3.0.
2016-07-07 06:54:06 +03:00
Efraim Flashner 8157af2e09
gnu: khmer: Limit to x86_64 systems only.
* gnu/packages/bioinformatics.scm (khmer)[supported-systems]: New field.
2016-07-07 06:33:28 +03:00
Leo Famulari 25a814ceab
gnu: httpd: Update to 2.4.23.
Fixes CVE-2016-4979.

* gnu/packages/web.scm (httpd): Update to 2.4.23.
2016-07-06 14:37:46 -04:00
Efraim Flashner 15ca556bbc
gnu: pumpa: Remove extra input.
* gnu/packages/pumpio.scm (pumpa)[inputs]: Remove qjson.
2016-07-06 21:22:36 +03:00
Roel Janssen 8f82641ac9
gnu: Add emacs-hl-todo.
* gnu/packages/emacs.scm (emacs-hl-todo): New variable.
2016-07-06 19:02:13 +02:00
Roel Janssen 41184943ae
gnu: Add emacs-ess.
* gnu/packages/emacs.scm (emacs-ess): New variable.
2016-07-06 13:25:50 +02:00
Ricardo Wurmus 26112c0abb
gnu: python-numexpr: Update to 2.6.0.
* gnu/packages/python.scm (python-numexpr): Update to 2.6.0.
2016-07-06 12:02:18 +02:00
Ben Woodcroft 975cd29a98
gnu: r-ggplot2: Add r-svglite to propagated-inputs.
* gnu/packages/statistics.scm (r-ggplot2)[propagated-inputs]: Add
r-svglite.
2016-07-06 15:17:29 +08:00
Ben Woodcroft 3aebedcc02
gnu: Add r-svglite.
* gnu/packages/statistics.scm (r-svglite): New variable.
2016-07-06 15:17:29 +08:00
Ben Woodcroft c5940b157e
gnu: Add r-gdtools.
* gnu/packages/statistics.scm (r-gdtools): New variable.
2016-07-06 15:17:29 +08:00
Efraim Flashner 6baa83d283
gnu: sudo: Update to 1.8.17p1.
* gnu/packages/admin.scm (sudo): Update to 1.8.17p1.
[source]: Remove patch.
* gnu/packages/patches/sudo-CVE-2015-5602.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-07-06 07:28:09 +03:00
Efraim Flashner fda746b198
gnu: menu-cache: Update to 1.0.1.
* gnu/packages/lxde.scm (menu-cache): Update to 1.0.1.
2016-07-05 22:36:13 +03:00
Efraim Flashner d78c952dfd
gnu: lxtask: Update to 0.1.7.
* gnu/packages/lxde.scm (lxtask): Update to 0.1.7.
2016-07-05 22:33:20 +03:00
Efraim Flashner d7ec759a7a
gnu: lxrandr: Update to 0.3.1.
* gnu/packages/lxde.scm (lxrandr): Update to 0.3.1.
2016-07-05 22:30:38 +03:00
Efraim Flashner 2c2a9ef79e
gnu: lxappearance: Update to 0.6.2.
* gnu/packages/lxde.scm (lxappearance): Update to 0.6.2.
2016-07-05 22:27:11 +03:00
Ricardo Wurmus 5fb5dffbd4
gnu: Add multiqc.
* gnu/packages/bioinformatics.scm (multiqc): New variable.
2016-07-05 16:32:37 +02:00
Roel Janssen 091963c69b
gnu: Add perltidy.
* gnu/packages/perl.scm (perltidy): New variable.
2016-07-05 16:12:23 +02:00
Ricardo Wurmus 1f1b20b8be
gnu: Add bits.
* gnu/packages/bioinformatics.scm (bits): New variable.
2016-07-05 15:43:36 +02:00
Ricardo Wurmus 66e40e0065
gnu: Add EMBOSS.
* gnu/packages/bioinformatics.scm (emboss): New variable.
2016-07-05 12:32:12 +02:00
Ricardo Wurmus aae8ba4746
gnu: Add libharu.
* gnu/packages/pdf.scm (libharu): New variable.
2016-07-05 12:26:38 +02:00
Alex Sassmannshausen 5082eac957
gnu: Add perl-list-someutils.
* gnu/packages/perl.scm (perl-list-someutils): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-05 11:12:35 +02:00
Alex Sassmannshausen 8bcafb7440
gnu: Add perl-list-compare.
* gnu/packages/perl.scm (perl-list-compare): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-05 11:12:22 +02:00
Alex Sassmannshausen 056575421e
gnu: Add perl-io-captureoutput.
* gnu/packages/perl.scm (perl-io-captureoutput): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-05 11:12:04 +02:00
Ricardo Wurmus cf91cfc0c4
gnu: testdisk: Update to 7.0.
* gnu/packages/admin.scm (testdisk): Update to 7.0.
2016-07-05 08:54:47 +02:00
Ricardo Wurmus d6a08ec0c6
gnu: testdisk: Add NTFS support.
* gnu/packages/admin.scm (testdisk)[inputs]: Add ntfs-3g.
2016-07-05 08:54:39 +02:00
Efraim Flashner 0adc21c293
gnu: Add python2-pytest-cache.
* gnu/packages/python.scm (python2-pytest-cache): New variable.
(python-pytest-cache)[properties]: New field.
2016-07-04 22:47:15 +03:00
Roel Janssen fa8af53e99
gnu: Add scrollkeeper.
* gnu/packages/documentation.scm (scrollkeeper): New variable.
2016-07-04 21:32:31 +02:00
ng0 42c4b24646
gnu: python2-pythondialog: Update to 3.4.0.
* gnu/packages/python.scm (python2-pythondialog): Update to 3.4.0.
[source]: Use pypi-uri.

Co-authored-by: Leo Famulari <leo@famulari.name>
2016-07-04 14:35:24 -04:00
Kei Kebreau 35e2e49577
gnu: Add chromium-bsu.
* gnu/packages/games.scm (chromium-bsu): New variable.
2016-07-04 11:36:38 -04:00
Roel Janssen 744004a31f
gnu: Add r-edger.
* gnu/packages/bioinformatics.scm (r-edger): New variable.
2016-07-04 14:49:07 +02:00
Roel Janssen 7d4224d794
gnu: Add r-limma.
* gnu/packages/bioinformatics.scm (r-limma):  New variable.
2016-07-04 14:39:16 +02:00
Roel Janssen 7034791aa2
gnu: Add emacs-eprime.
* gnu/packages/emacs.scm (emacs-eprime): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2016-07-04 10:14:18 +03:00
Alex Kost e446182e38
gnu: guix: Add emacs-magit-popup to propagated-inputs.
* gnu/packages/package-management.scm (guix-0.10.0): Add
'emacs-magit-popup' to make it possible to use "M-x guix" command.
2016-07-04 10:14:18 +03:00
Alex Kost c1562e3de1
gnu: Add emacs-magit-popup.
* gnu/packages/emacs.scm (emacs-magit-popup): New variable.
2016-07-04 10:14:18 +03:00
ng0 7012e2c716
gnurl: Update to 7.48.0.
* gnu/packages/gnunet.scm (gnurl): Update to 7.48.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-07-04 10:01:12 +03:00
ng0 679b535b03
Update name for ng0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-03 23:48:32 +02:00
David Craven 9b0942c1b0
gnu: Add rng-tools.
* gnu/packages/linux.scm (rng-tools): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-03 17:29:12 -04:00
David Craven 75750abbbc
gnu: Order module imports in (gnu packages linux) alphabetically.
* gnu/packages/linux.scm: Order module imports alphabetically.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-03 17:29:12 -04:00
Troy Sankey a2cb16b0c6
gnu: Add alot.
* gnu/packages/mail.scm (alot): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-03 16:52:19 -04:00
Troy Sankey 47d0b29269
gnu: Add python-urwidtrees.
* gnu/packages/python.scm (python-urwidtrees, python2-urwidtrees):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-03 16:52:19 -04:00
Efraim Flashner b58c1b2d9b
gnu: sshfs-fuse: Update to 2.8.
* gnu/packages/linux.scm (sshfs-fuse): Update to 2.8.
2016-07-03 22:09:21 +03:00
Leo Famulari df32099104
gnu: font-gnu-unifont: Update to 9.0.01.
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 9.0.01.
2016-07-03 14:16:48 -04:00
John J Foerch 3fa3151f8c
gnu: conkeror: Update to 1.0.3
* gnu/packages/conkeror.scm (conkeror): Update to 1.0.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-07-03 20:30:08 +03:00
Ricardo Wurmus 2bb006121e
gnu: Add Amsynth.
* gnu/packages/music.scm (amsynth): New variable.
2016-07-03 19:02:49 +02:00
Ricardo Wurmus 1095bd1db0
gnu: Add emacs-emms-player-mpv.
* gnu/packages/emacs.scm (emacs-emms-player-mpv): New variable.
2016-07-03 18:31:39 +02:00
Ricardo Wurmus d06d4d7b2a
gnu: emms: Rename package to "emacs-emms".
* gnu/packages/emacs.scm (emms): Rename to "emacs-emms".
2016-07-03 18:31:39 +02:00
Efraim Flashner 0c9df45755
gnu: smalltalk: Don't use bundled libraries.
* gnu/packages/smalltalk.scm (smalltalk)[native-inputs]: Add libffi,
libltdl, libsigsegv, pkg-config.
[home-page]: Update to new home-page.
2016-07-03 14:56:37 +03:00
Efraim Flashner 569d9efe3a
gnu: cgit: Update to 1.0.
* gnu/packages/version-control.scm (cgit): Update to 1.0.
2016-07-03 14:15:08 +03:00
Efraim Flashner 94d8726bfb
gnu: mercurial: Update to 3.8.4.
* gnu/packages/version-control.scm (mercurial): Update to 3.8.4.
2016-07-03 14:08:26 +03:00
Efraim Flashner 4dc9dcc272
gnu: exiv2: Update to 0.25.
* gnu/packages/geeqie.scm (exiv2): Update to 0.25.
[native-inputs]: Add intltool.
2016-07-03 12:55:02 +03:00
Efraim Flashner da6383b3ea
gnu: geeqie: Update to 1.3.
* gnu/packages/geeqie.scm (geeqie): Update to 1.3.
[arguments]: Add autogen phase.
[native-inputs]: Add autoconf, automake, glib.
2016-07-03 12:32:50 +03:00
Efraim Flashner dbd6bc5cc6
gnu: ninja: Update to 1.7.1.
* gnu/packages/ninja.scm (ninja): Update to 1.7.1.
* gnu/packages/patches/ninja-tests.patch: Update patch.
2016-07-03 12:00:25 +03:00
Efraim Flashner fa6a082ea8
gnu: emacs-helm: Update to 1.9.8.
* gnu/packages/emacs.scm (emacs-helm): Update to 1.9.8.
2016-07-03 11:15:15 +03:00
Efraim Flashner 54055e9ff9
gnu: emacs-slime: Update to 2.18.
* gnu/packages/emacs.scm (emacs-slime): Update to 2.18.
2016-07-03 11:12:43 +03:00
Efraim Flashner afb6fdaa5d
gnu: flycheck: Update to 28.
* gnu/packages/emacs.scm (flycheck): Update to 28.
2016-07-03 11:10:28 +03:00
Efraim Flashner 49f54a7454
gnu: openspecfun: Update to 0.5.2.
* gnu/packages/maths.scm (openspecfun): Update to 0.5.2.
2016-07-03 10:14:16 +03:00
Efraim Flashner 26f6e565a9
gnu: openlibm: Update to 0.5.1.
* gnu/packages/maths.scm (openlibm): Update to 0.5.1.
2016-07-03 10:07:17 +03:00
Efraim Flashner d7d7f99c48
gnu: librecad: Update to 2.1.1.
* gnu/packages/engineering.scm (librecad): Update to 2.1.1.
2016-07-03 09:56:45 +03:00
Efraim Flashner 0562a81eae
gnu: pugixml: Update to 1.7.
* gnu/packages/xml.scm (pugixml): Update to 1.7.
2016-07-03 08:28:51 +03:00
Efraim Flashner c17489124e
gnu: libetpan: Update to 1.7.2.
* gnu/packages/mail.scm (libetpan): Update to 1.7.2.
[inputs]: Add zlib.
2016-07-03 07:21:56 +03:00
Efraim Flashner 6a628e8ba7
gnu: openimageio: Update to 1.6.15.
* gnu/packages/graphics.scm (openimageio): Update to 1.6.15.
[source]: Remove patch.
* gnu/packages/patches/openimageio-boost-1.60.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-07-03 06:44:49 +03:00
Efraim Flashner 0a7fc756fe
gnu: cgal: Update to 4.8.1.
* gnu/packages/graphics.scm (cgal): Update to 4.8.1.
[source]: Release tarballs now at Github.
2016-07-03 03:28:03 +03:00
Efraim Flashner fbb060fec8
gnu: ffmpeg-2.8: Update to 2.8.7.
* gnu/packages/video.scm (ffmpeg): Update to 2.8.7.
2016-07-03 00:40:24 +03:00
Efraim Flashner cb764dc838
gnu: xorriso: Update to 1.4.4.
* gnu/packages/cdrom.scm (xorriso): Update to 1.4.4.
[home-page]: Use https.
2016-07-03 00:39:21 +03:00
Efraim Flashner 8ffa5a5798
gnu: ffmpeg: Update to 3.1.1.
* gnu/packages/video.scm (ffmpeg): Update to 3.1.1.
2016-07-02 23:14:06 +03:00
Efraim Flashner c5795adf61
gnu: enlightenment: Update to 0.21.0.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.0.
2016-07-02 22:15:32 +03:00
Alex Sassmannshausen abf18075ca
gnu: Add perl-ipc-system-simple.
* gnu/packages/perl.scm (perl-ipc-system-simple): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen 2dca669e45
gnu: Add perl-guard.
* gnu/packages/perl.scm (perl-guard): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen 7640c62dd2
gnu: Add perl-file-zglob.
* gnu/packages/perl.scm (perl-file-zglob): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen d209710bd4
gnu: Add perl-config-ini.
* gnu/packages/perl.scm (perl-config-ini): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen 4ca06e4c87
gnu: Add perl-mixin-linewise.
* gnu/packages/perl.scm (perl-mixin-linewise): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen 77ff12c987
gnu: Add perl-perlio-utf8-strict.
* gnu/packages/perl.scm (perl-perlio-utf8_strict): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen a65d0fdb7c
gnu: Add perl-test-class-most.
* gnu/packages/perl.scm (perl-test-class-most): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen d2d6cd67c2
gnu: Add perl-test-class.
* gnu/packages/perl.scm (perl-test-class): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen e957060ccb
gnu: perl-text-diff: Update perl-text-diff.
* gnu/packages/perl.scm (perl-text-diff): Correct URL, update to 1.44.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
John J. Foerch 6d3ef286b1
gnu: Add midicsv.
* gnu/packages/music.scm (midicsv): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Leo Famulari 9996ab16e6
gnu: gimp: Fix CVE-2016-4994.
* gnu/packages/patches/gimp-CVE-2016-4994.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gimp.scm (gimp): Use it.
2016-07-02 10:13:55 -04:00
Leo Famulari 328ae34112
gnu: python-sphinx-repoze-autointerface: Update to 0.8.
* gnu/packages/python.scm (python-sphinx-repoze-autointerface,
python2-sphinx-repoze-autointerface): Update to 0.8.
2016-07-01 20:55:53 -04:00
Leo Famulari 07abcc2e73
gnu: imagemagick: Update to 6.9.5-0.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-0.
2016-07-01 20:27:09 -04:00
Leo Famulari 9c509ca9a6
gnu: python-cryptography, python-cryptography-vectors: Update to 1.3.4.
* gnu/packages/python.scm (python-cryptography, python2-cryptography):
Update to 1.3.4.
[source]: Use pypi-uri.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.3.4.
[source]: Use pypi-uri.
2016-07-01 20:23:07 -04:00
Efraim Flashner d5da7ee418
gnu: rofi: Update to 1.1.0.
* gnu/packages/xdisorg.scm (rofi): Update to 1.1.0.
2016-07-01 17:30:16 +03:00
Efraim Flashner 5bf834225a
gnu: libreoffice: Update to 5.1.4.2 [fixes CVE-2016-4324].
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.4.2.
[native-inputs]: Switch python to python-wrapper.
[arguments]: Add '--without-doxygen' and '--disable-gtk3'.
2016-07-01 15:53:08 +03:00
Efraim Flashner 2638ec61e0
gnu: orcus: Update to 0.9.2.
* gnu/packages/libreoffice.scm (orcus): Update to 0.9.2.
2016-07-01 15:51:32 +03:00
Ben Woodcroft 71830f0e49
gnu: vsearch: Update to 2.0.1.
*  gnu/packages/bioinformatics.scm (vsearch): Update to 2.0.1.
2016-07-01 09:01:28 +10:00
Ben Woodcroft c7f04517a6
gnu: Add r-glmnet.
* gnu/packages/statistics.scm (r-glmnet): New variable.
2016-07-01 09:01:20 +10:00
Efraim Flashner 84d08af653
gnu: busybox: Use 'modify-phases'.
* gnu/packages/busybox.scm (busybox)[arguments]: Use 'modify-phases'.
2016-06-30 19:11:45 +03:00
Efraim Flashner 2e5505e5ea
gnu: busybox: Update to 1.25.0.
* gnu/packages/busybox.scm (busybox): Update to 1.25.0.
[native-inputs]: Add which.
2016-06-30 19:11:27 +03:00
Efraim Flashner 5fc4df0cb5
gnu: owncloud-client: Remove some bundled libs.
* gnu/packages/owncloud.scm (owncloud-client)[source]: Add a snippet
removing some of the 3rd party projects.
2016-06-30 10:56:57 +03:00
Efraim Flashner 9b1c1ea129
gnu: owncloud-client: Update to 2.2.2.
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.2.
2016-06-30 09:55:18 +03:00
Danny Milosavljevic f4155188c3
gnu: Add python-prompt-toolkit.
* gnu/packages/python.scm (python-prompt-toolkit, python2-prompt-toolkit):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-06-29 22:31:05 -04:00
Leo Famulari e4875826d8
gnu: python-wcwidth: Add missing 'properties' field.
This is a followup to commit a44fd439dc.

* gnu/packages/python.scm (python-wcwidth)[properties]: New field.
2016-06-29 22:25:44 -04:00
Ludovic Courtès 468e0b18d1
gnu: ceres-solver: Propagate GLOG.
* gnu/packages/maths.scm (ceres)[inputs]: Move GLOG to...
[propagated-inputs]: ... here.  New field.
2016-06-29 16:08:46 +02:00
Ben Woodcroft 8dec2229a2
gnu: blast+: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (blast+): Update to 2.4.0.
2016-06-29 22:42:47 +10:00
Ludovic Courtès bc3a2e3503
gnu: ceres-solver: Depend on glog.
* gnu/packages/maths.scm (ceres)[arguments]: Remove -DMINIGLOG=ON.
[inputs]: Add GLOG.
2016-06-29 12:01:05 +02:00
Ludovic Courtès 53d159f843
gnu: Add glog.
* gnu/packages/logging.scm (glog): New variable.
2016-06-29 11:13:03 +02:00
Ludovic Courtès 2de091f0c8
gnu: node: Make sure 'npm' remains a symlink after 'patch-shebangs'.
Fixes <http://bugs.gnu.org/23744>.
Reported by Jovany Leandro G.C <bit4bit@riseup.net>
and Jelle Licht <jlicht@fsfe.org>.

* gnu/packages/node.scm (node)[arguments]: Replace 'patch-shebangs'
phase.
2016-06-29 10:06:18 +02:00
Ludovic Courtès c2c36f5fab
gnu: openexr: Install 'ImfStdIO.h'.
* gnu/packages/graphics.scm (openexr)[source](snippet): Modify
IlmImf/Makefile.in so that it installs 'ImfStdIO.h'.
2016-06-29 10:06:18 +02:00
Ricardo Wurmus b0069a6777
gnu: avrdude: Use libusb-compat.
* gnu/packages/patches/avrdude-fix-libusb.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/flashing-tools.scm (avrdude)[source]: Remove patch.
[inputs]: Replace "libusb" with "libusb-compat".
2016-06-29 07:15:33 +02:00
Ben Woodcroft 3bce0f14b2
gnu: star: Update to 2.5.2a.
* gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
2016-06-29 10:14:22 +10:00
Ben Woodcroft 6c737963f6
gnu: htslib: Update to 1.3.1.
* gnu/packages/bioinformatics.scm (htslib): Update to 1.3.1.
2016-06-29 10:14:22 +10:00
Ricardo Wurmus ec9466388e
gnu: Add SEEK.
* gnu/packages/bioinformatics.scm (seek): New variable.
2016-06-28 22:49:05 +02:00
Ben Woodcroft d6e374a0d9
gnu: mafft: Update to 7.299.
* gnu/packages/bioinformatics.scm (mafft): Update to 7.299.
2016-06-28 21:42:15 +10:00
Efraim Flashner 48d4ce6ea3
Revert "gnu: qtbase: Don't propagate mesa."
This reverts commit 763a8e6e23.
2016-06-28 14:33:37 +03:00
Ben Woodcroft 45469ebe52
gnu: metabat: Update to 0.26.3.
* gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3.
[arguments]: Update include and linking paths accordingly.
2016-06-28 21:28:06 +10:00
Ben Woodcroft af45244e36
gnu: diamond: Update to 0.8.9.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.9.
2016-06-28 19:31:25 +10:00
Ricardo Wurmus 05e9f30f1e
gnu: r: Add pango to inputs.
* gnu/packages/statistics.scm (r)[inputs]: Remove cairo, add pango.
2016-06-28 09:36:00 +02:00
Kei Kebreau aea7d1d516
gnu: Add orage.
* gnu/packages/xfce.scm (orage): New variable.
2016-06-27 12:58:06 -04:00
宋文武 06961617a1
gnu: python2-orator: Rearrange inputs.
* gnu/packages/python.scm (python2-orator)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 b26760302a
gnu: python-orator: Rearrange inputs.
* gnu/packages/python.scm (python-orator)[native-inputs]: Move
python-arrow, python-blinker, python-cleo, python-fake-factory,
python-inflection, python-lazy-object-proxy, python-pyaml,
python-simplejson, python-wrapt ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 24c9aa1810
gnu: python2-fake-factory: Rearrange inputs.
* gnu/packages/python.scm (python2-fake-factory)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 bbcd729791
gnu: python-fake-factory: Rearrange inputs.
* gnu/packages/python.scm (python-fake-factory)[native-inputs]: Move
python-dateutil-2, python-six ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 d42560bdfa
gnu: python-email-validator: Rearrange inputs.
* gnu/packages/python.scm (python-email-validator)[native-inputs]: Move
python-dnspython, python-idna ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 9403150a96
gnu: python-cleo: Rearrange inputs.
* gnu/packages/python.scm (python-cleo)[native-inputs]: Move
python-psutil, python-pylev ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 36aed73648
gnu: python-arrow: Rearrange inputs.
* gnu/packages/python.scm (python-arrow)[native-inputs]: Move
python-dateutil-2 ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 c8fa3d9b73
gnu: python-pykafka: Rearrange inputs.
* gnu/packages/python.scm (python-pykafka)[native-inputs]: Move
python-gevent, python-kazoo, python-tabulate ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 c18899e8cf
gnu: python-kazoo: Rearrange inputs.
* gnu/packages/python.scm (python-kazoo)[native-inputs]: Move
six ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 4591217058
gnu: python-twisted: Rearrange inputs.
* gnu/packages/python.scm (python-twisted)[native-inputs]: Move
python-zope-interface ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
Matthew Jordan 7a2941a83e
gnu: Add Go 1.4.
* gnu/local.mk: Modified file.
* gnu/packages/golang.scm: New file.

Co-authored-by: Efraim Flashner <efraim@flashner.co.il>
Co-authored-by: Andy Wingo <wingo@igalia.com>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-06-27 14:09:10 +02:00
Ben Woodcroft 94ff31572d
gnu: Add khmer.
* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer-use-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-06-27 21:35:16 +10:00
Ben Woodcroft 9ded145717
gnu: Add python-screed.
* gnu/packages/bioinformatics.scm (python-screed, python2-screed):
New variables.
2016-06-27 21:16:39 +10:00
Efraim Flashner 095b7fea44
gnu: qttools: Update to 5.6.1-1.
* gnu/packages/qt.scm (qttools): Update to 5.6.1-1.
2016-06-27 05:25:32 +03:00
Efraim Flashner 677b98ae68
gnu: qtlocation: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtlocation): Update to 5.6.1-1.
2016-06-27 05:25:30 +03:00
Efraim Flashner a2a256562f
gnu: qtwebchannel: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtwebchannel): Update to 5.6.1-1.
2016-06-27 05:25:27 +03:00
Efraim Flashner 33741e16f4
gnu: qtserialport: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtserialport): Update to 5.6.1-1.
[inputs]: Add eudev.
2016-06-27 05:25:10 +03:00
Efraim Flashner 66f26a35f1
gnu: qtwayland: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtwayland): Update to 5.6.1-1.
2016-06-27 05:25:05 +03:00
Efraim Flashner 99f6f56f4f
gnu: qtmultimedia: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtmultimedia): Update to 5.6.1-1.
2016-06-27 05:25:02 +03:00
Efraim Flashner 2743daffab
gnu: qtsensors: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtsensors): Update to 5.6.1-1.
2016-06-27 05:25:00 +03:00
Efraim Flashner fb767debee
gnu: qtwebsockets: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtwebsockets): Update to 5.6.1-1.
2016-06-27 05:24:58 +03:00
Efraim Flashner 4254b206b4
gnu: qtconnectivity: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtconnectivity): Update to 5.6.1-1.
2016-06-27 05:24:56 +03:00
Efraim Flashner f3a3210cfd
gnu: qtdeclarative: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtdeclarative): Update to 5.6.1-1.
2016-06-27 05:24:53 +03:00
Efraim Flashner d547a1970d
gnu: qtxmlpatterns: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtxmlpatterns): Update to 5.6.1-1.
2016-06-27 05:24:51 +03:00
Efraim Flashner 0835e22816
gnu: qtx11extras: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtx11extras): Update to 5.6.1-1.
2016-06-27 05:24:49 +03:00
Efraim Flashner 1c16029b7f
gnu: qtimageformats: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtimageformats): Update to 5.6.1-1.
2016-06-27 05:24:46 +03:00
Efraim Flashner 7de7d8a639
gnu: qtsvg: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtsvg): Update to 5.6.1-1.
2016-06-27 05:24:44 +03:00
Efraim Flashner c7386f4e0c
gnu: qtbase: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtbase): Update to 5.6.1-1.
2016-06-27 05:24:42 +03:00
Efraim Flashner f66970a7ed
gnu: qtbase: Add eudev and libinput support.
* gnu/packages/qt.scm (qtbase)[inputs]: Add eudev, libinput.
2016-06-27 05:24:40 +03:00
Efraim Flashner 763a8e6e23
gnu: qtbase: Don't propagate mesa.
* gnu/packages/qt.scm (qtbase)[propagated-inputs]: Move mesa ...
[inputs]: ... to here.
(qtsvg)[propagated-inputs]: No need to clear propagated-inputs.
2016-06-27 05:24:33 +03:00
David Craven 9dd674db01
daemon: Rename 'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'.
Partly fixes <http://bugs.gnu.org/22459>.
Reported by Jeff Mickey <j@codemac.net> and David Craven <david@craven.ch>.

* nix/libstore/globals.cc (Settings::processEnvironment()): Change
'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'.
* nix/local.mk (libstore_a_CPPFLAGS): Likewise.
* guix/config.scm.in (%config-directory): Likewise.
* build-aux/test-env.in: Likewise.
* gnu/packages/patches/hydra-automake-1.15.patch: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-06-26 23:11:07 +02:00
宋文武 4b67053962
gnu: Add starfighter.
* gnu/packages/games.scm (starfighter): New variable.
2016-06-26 20:31:55 +08:00
Efraim Flashner 66fd9858f3
gnu: mpv: Update to 0.18.0.
* gnu/packages/video.scm (mpv): Update to 0.18.0.
[arguments]: Remove disabled '--enable-gpl3' configure flag.
2016-06-26 07:21:07 +03:00
Ben Woodcroft c2e575185b
gnu: vsearch: Update to 2.0.0.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.0.0.
2016-06-26 12:43:39 +10:00
Mark H Weaver 36c6919c93
gnu: linux-libre: Update to 4.6.3.
* gnu/packages/linux.scm (linux-libre): Update to 4.6.3.
2016-06-25 13:13:36 -04:00
Mark H Weaver 18c658f966
gnu: linux-libre-4.4: Update to 4.4.14.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.14.
2016-06-25 13:12:12 -04:00
Lukas Gradl 893d963ae3
gnu: Add opendht.
* gnu/packages/crypto.scm (opendht): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-06-25 11:28:53 -04:00
Lukas Gradl d1ef573dec
gnu: Add msgpack.
* gnu/packages/serialization.scm (msgpack): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-06-25 11:28:53 -04:00
宋文武 5a7441910d
gnu: Add python-orator and python2-orator.
* gnu/packages/python.scm (python-orator, python2-orator): New variables.
2016-06-25 22:52:57 +08:00
宋文武 347175a27c
gnu: Add python-flexmock and python2-flexmock.
* gnu/packages/python.scm (python-flexmock, python2-flexmock): New variables.
2016-06-25 22:52:57 +08:00
宋文武 b49504fd8c
gnu: Add python-pyaml and python2-pyaml.
* gnu/packages/python.scm (python-pyaml, python2-pyaml): New variables.
2016-06-25 22:52:57 +08:00
宋文武 ea92ae01c2
gnu: Add python-fake-factory and python2-fake-factory.
* gnu/packages/python.scm (python-fake-factory, python2-fake-factory):
New variables.
2016-06-25 20:49:59 +08:00
宋文武 8987d91e7f
gnu: Add python-ukpostcodeparser and python2-ukpostcodeparser.
* gnu/packages/python.scm (python-ukpostcodeparser)
(python2-ukpostcodeparser): New variables.
2016-06-25 20:49:59 +08:00
宋文武 22711e2585
gnu: Add python-email-validator and python2-email-validator.
* gnu/packages/python.scm (python-email-validator)
(python2-email-validator): New variables.
2016-06-25 20:49:59 +08:00
宋文武 5477e05f01
gnu: Add python-dnspython and python2-dnspython.
* gnu/packages/python.scm (python-dnspython, python2-dnspython):
New variables.
2016-06-25 20:49:59 +08:00
宋文武 77cadb436b
gnu: Add python-lazy-object-proxy and python2-lazy-object-proxy.
* gnu/packages/python.scm (python-lazy-object-proxy)
(python2-lazy-object-proxy): New variables.
2016-06-25 20:49:59 +08:00
宋文武 f5deff7a03
gnu: Add python-cleo and python2-cleo.
* gnu/packages/python.scm (python-cleo, python2-cleo): New variables.
2016-06-25 20:49:59 +08:00
宋文武 1899556655
gnu: Add python-pylev and python2-pylev.
* gnu/packages/python.scm (python-pylev, python2-pylev): New variables.
2016-06-25 20:49:59 +08:00
宋文武 1f2b62a4fa
gnu: Add python-inflection and python2-inflection.
* gnu/packages/python.scm (python-inflection, python2-inflection):
New variables.
2016-06-25 20:49:59 +08:00
宋文武 ae43baa890
gnu: Add python-arrow and python2-arrow.
* gnu/packages/python.scm (python-arrow, python2-arrow): New variables.
2016-06-25 20:49:59 +08:00
宋文武 9250b0f3bf
gnu: Add python-chai and python2-chai.
* gnu/packages/python.scm (python-chai, python2-chai): New variables.
2016-06-25 20:49:59 +08:00
宋文武 8ea8e8d3c3
guix: python-build-system: Change pypi-uri to use https://pypi.io.
* guix/build-system/python.scm (pypi-uri): Use https://pypi.io.
* gnu/packages/python.scm (python-twisted)[uri]: Remove https://pypi.io.
2016-06-25 20:49:59 +08:00
Mark H Weaver 9f25019095
gnu: linux-libre-4.1: Update to 4.1.27.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.27.
2016-06-24 18:33:50 -04:00
Steve Sprang 3c6e42b3bc
gnu: Add erlang.
* gnu/packages/erlang.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored by: Leo Famulari <leo@famulari.name>
Co-authored by: Pjotr Prins <pjotr.public12@thebird.nl>
2016-06-24 10:45:26 -04:00
Andreas Enge b8a680f778
gnu: java-swt: Update to 4.6.
* gnu/packages/java.scm (java-swt): Update to 4.6.
2016-06-24 16:21:54 +02:00
Andreas Enge c19a61bb3e
gnu: pari-gp: Update to 2.7.6.
* gnu/packages/algebra.scm (pari-gp): Update to 2.7.6.
2016-06-24 13:56:07 +02:00
Ludovic Courtès a9fbe94edc
gnu: Add emacs-writegood-mode.
* gnu/packages/emacs.scm (emacs-writegood-mode): New variable.
2016-06-24 09:01:22 +02:00
Ludovic Courtès af4569095f
gnu: Add GNU Diction.
* gnu/packages/dictionaries.scm (diction): New variable.
2016-06-24 09:01:22 +02:00
Leo Famulari 11f2582b81
gnu: imagemagick: Update to 6.9.4-10.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4.10.
2016-06-24 00:51:14 -04:00
Ludovic Courtès 159daace2f
gnu: Add mcron2.
* gnu/packages/guile.scm (mcron2): New variable.
2016-06-22 22:56:06 +02:00
ng0 c5eef242ce
gnu: xorg.scm: Replace http with https in URLs.
* gnu/packages/xorg.scm: Use https for cgit.freedesktop.org,
www.x.org/wiki/, anongit.freedesktop.org.
2016-06-22 21:59:55 +03:00
ng0 612fddec34
gnu: haskell.scm: Replace http with https in Hackage, Github.
* gnu/packages/haskell.scm: Use https for Hackage, Github urls.
2016-06-22 21:59:44 +03:00
Efraim Flashner 7cc2e1e7e6
gnu: efl: Update to 1.17.2.
* gnu/packages/enlightenment.scm (efl): Update to 1.17.2.
2016-06-22 17:42:38 +03:00
Alex Kost da0cef6a2d
gnu: lightning: Fix typo.
This is a followup to commit c283b22e93.

* gnu/packages/assembly.scm (lightning): Add 'license' prefix.
2016-06-22 11:43:41 +03:00
ng0 384bc22ad8
gnu: perl-test-harness: Update to 3.36.
* gnu/packages/perl.scm (perl-test-harness): Update to 3.36.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-06-22 11:34:04 +03:00
Alex Kost c283b22e93
gnu: lightning: Move to (gnu packages assembly).
* gnu/packages/lightning.scm: Remove.  Move 'lightning' to...
* gnu/packages/assembly.scm (lightning): ... here.  New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2016-06-22 11:16:05 +03:00
Leo Famulari b3470031df
gnu: beets: Move propagated-inputs to inputs.
* gnu/packages/music.scm (beets)[propagated-inputs]: Replace with ...
[inputs]: ... new field.
2016-06-22 02:38:46 -04:00
Leo Famulari 88c8d72f3c
gnu: beets: Update to 1.3.18.
* gnu/packages/patches/beets-image-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/music.scm (beets): Update to 1.3.18.
[source]: Use patch.
2016-06-22 02:38:46 -04:00
Ben Woodcroft 69af462496
gnu: vsearch: Update to 0.11.2.
* gnu/packages/bioinformatics.scm (vsearch): Update to 0.11.2.
2016-06-22 07:51:12 +10:00
Jan Nieuwenhuizen a837997cab
gnu: nasm: Make build bit-reproducible.
* gnu/packages/patches/nasm-no-ps-pdf.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/assembly.scm (nasm): Use it.  Remove ghostscript, do not
build PS or PDF docs.  Makes build bit-reproducible.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-06-21 23:14:05 +02:00
Ben Woodcroft 9270298f75
gnu: Add ruby-puma.
gnu/packages/ruby.scm (ruby-puma): New variable.
gnu/packages/patches/ruby-puma-ignore-broken-test.patch: New file.
gnu/local.mk (dist_patch_DATA): Add it.
2016-06-21 21:46:45 +10:00
Ben Woodcroft b08134907d
gnu: Add ruby-hoe-git.
* gnu/packages/ruby.scm (ruby-hoe-git): New variable.
2016-06-21 21:46:45 +10:00
Ben Woodcroft 7b3df1e56e
gnu: Add r-vegan.
* gnu/packages/bioinformatics.scm (r-vegan): New variable.
2016-06-21 21:29:17 +10:00
Ben Woodcroft 0846620803
gnu: Add r-mgcv.
* gnu/packages/statistics.scm (r-mgcv): New variable.
2016-06-21 21:29:17 +10:00
Ben Woodcroft de682e6f0f
gnu: Add r-permute.
* gnu/packages/statistics.scm (r-permute): New variable.
2016-06-21 21:29:17 +10:00
Efraim Flashner 7a15a68f75
gnu: texlive: Update to 2016.
* gnu/packages/tex.scm (texlive-extra-src, texlive-texmf-src,
texlive-bin, texlive-texmf, texlive): Update to 2016.
(texlive-texmf)[properies]: Add max-silent-time so grafts don't time out.
2016-06-21 13:49:20 +03:00
Ludovic Courtès 09b87aff46
gnu: Adjust to yasm change of module.
This is a followup to 15a3fffc59.

* gnu/packages/gnuzilla.scm,
gnu/packages/gstreamer.scm, gnu/packages/kodi.scm,
gnu/packages/video.scm: Adjust import list to yasm move.
2016-06-21 12:27:50 +02:00
Ludovic Courtès 15a3fffc59
gnu: yasm: Move to (gnu packages assembly).
* gnu/packages/yasm.scm: Remove.  Move 'yasm' to...
* gnu/packages/assembly.scm (yasm): ... here.  New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2016-06-21 12:25:56 +02:00
Jan Nieuwenhuizen 8472bdecb6
gnu: Add nasm.
* gnu/packages/assembly.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-06-21 12:23:34 +02:00
Ben Woodcroft cec2653bb4
gnu: diamond: Update to 0.8.7.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.7.
2016-06-21 20:00:38 +10:00
Eric Bavier 2f046a0d7e
gnu: Update american-fuzzy-lop to 2.15b.
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.15b.
2016-06-21 00:02:02 -05:00
Eric Bavier 0405e5f491
gnu: Add thefuck.
* gnu/packages/admin.scm (thefuck): New variable.
2016-06-20 23:54:20 -05:00
Eric Bavier 7108425c37
gnu: shotwell: Update to 0.23.1.
Addresses DWF-2016-89001: validate TLS certificates.

* gnu/packages/gnome.scm (shotwell): Update to 0.23.1.
[inputs]: replace webkitgtk-2.4 with webkitgtk.
2016-06-20 23:43:37 -05:00
Leo Famulari 909fbd2bf0
gnu: python-wsgi-intercept: Update to 1.2.2.
* gnu/packages/python.scm (python-wsgi-intercept, python2-wsgi-intercept):
Update to 1.2.2.
2016-06-20 18:51:44 -04:00
Leo Famulari c02af1c82a
gnu: python-requests-toolbelt: Update to 0.6.2.
* gnu/packages/python.scm (python-requests-toolbelt,
python2-requests-toolbelt): Update to 0.6.2.
2016-06-20 18:51:44 -04:00
Leo Famulari 0b942744eb
gnu: vdirsyncer: Update to 0.11.2.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.11.2.
2016-06-20 18:51:44 -04:00
Leo Famulari 3d2e0dbcea
gnu: python-click-threading: Update to 0.2.0.
* gnu/packages/python.scm (python-click-threading, python2-click-threading):
Update to 0.2.0.
2016-06-20 18:51:44 -04:00