8dec2229a2
gnu: blast+: Update to 2.4.0.
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* gnu/packages/bioinformatics.scm (blast+): Update to 2.4.0.
2016-06-29 22:42:47 +10:00
bc3a2e3503
gnu: ceres-solver: Depend on glog.
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* gnu/packages/maths.scm (ceres)[arguments]: Remove -DMINIGLOG=ON.
[inputs]: Add GLOG.
2016-06-29 12:01:05 +02:00
53d159f843
gnu: Add glog.
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* gnu/packages/logging.scm (glog): New variable.
2016-06-29 11:13:03 +02:00
2de091f0c8
gnu: node: Make sure 'npm' remains a symlink after 'patch-shebangs'.
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Fixes <http://bugs.gnu.org/23744 >.
Reported by Jovany Leandro G.C <bit4bit@riseup.net>
and Jelle Licht <jlicht@fsfe.org>.
* gnu/packages/node.scm (node)[arguments]: Replace 'patch-shebangs'
phase.
2016-06-29 10:06:18 +02:00
c2c36f5fab
gnu: openexr: Install 'ImfStdIO.h'.
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* gnu/packages/graphics.scm (openexr)[source](snippet): Modify
IlmImf/Makefile.in so that it installs 'ImfStdIO.h'.
2016-06-29 10:06:18 +02:00
b0069a6777
gnu: avrdude: Use libusb-compat.
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* gnu/packages/patches/avrdude-fix-libusb.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/flashing-tools.scm (avrdude)[source]: Remove patch.
[inputs]: Replace "libusb" with "libusb-compat".
2016-06-29 07:15:33 +02:00
3bce0f14b2
gnu: star: Update to 2.5.2a.
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* gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
2016-06-29 10:14:22 +10:00
6c737963f6
gnu: htslib: Update to 1.3.1.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.3.1.
2016-06-29 10:14:22 +10:00
ec9466388e
gnu: Add SEEK.
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* gnu/packages/bioinformatics.scm (seek): New variable.
2016-06-28 22:49:05 +02:00
d6e374a0d9
gnu: mafft: Update to 7.299.
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* gnu/packages/bioinformatics.scm (mafft): Update to 7.299.
2016-06-28 21:42:15 +10:00
48d4ce6ea3
Revert "gnu: qtbase: Don't propagate mesa."
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This reverts commit 763a8e6e23
2016-06-28 14:33:37 +03:00
45469ebe52
gnu: metabat: Update to 0.26.3.
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* gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3.
[arguments]: Update include and linking paths accordingly.
2016-06-28 21:28:06 +10:00
af45244e36
gnu: diamond: Update to 0.8.9.
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* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.9.
2016-06-28 19:31:25 +10:00
05e9f30f1e
gnu: r: Add pango to inputs.
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* gnu/packages/statistics.scm (r)[inputs]: Remove cairo, add pango.
2016-06-28 09:36:00 +02:00
d2fa61bc35
tests: Add Avahi and NSS-mDNS test.
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* gnu/tests/base.scm (%avahi-os): New variable.
(run-nss-mdns-test): New procedure.
(%test-nss-mdns): New variable.
2016-06-27 21:41:38 +02:00
c8695f325d
services: avahi: Add #:debug? parameter.
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* gnu/services/avahi.scm (<avahi-configuration>)[debug?]: New field.
(avahi-shepherd-service): Honor it.
(avahi-service): Add #:debug? and honor it.
* doc/guix.texi (Networking Services): Adjust accordingly.
2016-06-27 21:41:38 +02:00
194ccecf77
services: avahi: Pass --daemonize and check for the PID file.
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This makes sure the service's 'start' finishes when avahi-daemon is
ready to process requests.
* gnu/services/avahi.scm (avahi-shepherd-service): Use --daemonize
instead of --syslog and add #:pid-file.
2016-06-27 21:41:38 +02:00
037f9e07cd
tests: 'marionette-service-type' nows takes a <marionette-configuration>.
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* gnu/tests.scm (<marionette-configuration>): New record type.
(marionette-shepherd-service): Argument now is a <marionette-configuration>.
(marionette-operating-system): Adjust accordingly. Add #:requirements
parameter and honor it.
2016-06-27 21:41:38 +02:00
858d372c98
tests: base: Add host name resolution tests.
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* gnu/tests/base.scm (run-basic-test)["host name resolution",
"host not found"]: New tests.
2016-06-27 21:41:38 +02:00
9009538d84
services: Export more service types.
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* gnu/services/base.scm (syslog-service-type): Export.
(urandom-seed-service-type): Export.
2016-06-27 21:41:38 +02:00
04101d99ee
services: nscd: Wait for the PID file.
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* gnu/services/base.scm (nscd-shepherd-service): Pass #:pid-file.
2016-06-27 21:41:38 +02:00
b6683f1507
doc: Fix typo for 'static-networking-service'.
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* doc/guix.texi (Networking Services): Change #:name-services to
#:name-servers.
2016-06-27 21:41:38 +02:00
aea7d1d516
gnu: Add orage.
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* gnu/packages/xfce.scm (orage): New variable.
2016-06-27 12:58:06 -04:00
06961617a1
gnu: python2-orator: Rearrange inputs.
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* gnu/packages/python.scm (python2-orator)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
b26760302a
gnu: python-orator: Rearrange inputs.
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* gnu/packages/python.scm (python-orator)[native-inputs]: Move
python-arrow, python-blinker, python-cleo, python-fake-factory,
python-inflection, python-lazy-object-proxy, python-pyaml,
python-simplejson, python-wrapt ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
24c9aa1810
gnu: python2-fake-factory: Rearrange inputs.
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* gnu/packages/python.scm (python2-fake-factory)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
bbcd729791
gnu: python-fake-factory: Rearrange inputs.
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* gnu/packages/python.scm (python-fake-factory)[native-inputs]: Move
python-dateutil-2, python-six ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
d42560bdfa
gnu: python-email-validator: Rearrange inputs.
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* gnu/packages/python.scm (python-email-validator)[native-inputs]: Move
python-dnspython, python-idna ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
9403150a96
gnu: python-cleo: Rearrange inputs.
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* gnu/packages/python.scm (python-cleo)[native-inputs]: Move
python-psutil, python-pylev ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
36aed73648
gnu: python-arrow: Rearrange inputs.
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* gnu/packages/python.scm (python-arrow)[native-inputs]: Move
python-dateutil-2 ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
c8fa3d9b73
gnu: python-pykafka: Rearrange inputs.
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* gnu/packages/python.scm (python-pykafka)[native-inputs]: Move
python-gevent, python-kazoo, python-tabulate ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
c18899e8cf
gnu: python-kazoo: Rearrange inputs.
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* gnu/packages/python.scm (python-kazoo)[native-inputs]: Move
six ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
4591217058
gnu: python-twisted: Rearrange inputs.
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* gnu/packages/python.scm (python-twisted)[native-inputs]: Move
python-zope-interface ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
7a2941a83e
gnu: Add Go 1.4.
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* gnu/local.mk: Modified file.
* gnu/packages/golang.scm: New file.
Co-authored-by: Efraim Flashner <efraim@flashner.co.il>
Co-authored-by: Andy Wingo <wingo@igalia.com>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-06-27 14:09:10 +02:00
94ff31572d
gnu: Add khmer.
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* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer-use-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-06-27 21:35:16 +10:00
9ded145717
gnu: Add python-screed.
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* gnu/packages/bioinformatics.scm (python-screed, python2-screed):
New variables.
2016-06-27 21:16:39 +10:00
095b7fea44
gnu: qttools: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qttools): Update to 5.6.1-1.
2016-06-27 05:25:32 +03:00
677b98ae68
gnu: qtlocation: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtlocation): Update to 5.6.1-1.
2016-06-27 05:25:30 +03:00
a2a256562f
gnu: qtwebchannel: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtwebchannel): Update to 5.6.1-1.
2016-06-27 05:25:27 +03:00
33741e16f4
gnu: qtserialport: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtserialport): Update to 5.6.1-1.
[inputs]: Add eudev.
2016-06-27 05:25:10 +03:00
66f26a35f1
gnu: qtwayland: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtwayland): Update to 5.6.1-1.
2016-06-27 05:25:05 +03:00
99f6f56f4f
gnu: qtmultimedia: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtmultimedia): Update to 5.6.1-1.
2016-06-27 05:25:02 +03:00
2743daffab
gnu: qtsensors: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtsensors): Update to 5.6.1-1.
2016-06-27 05:25:00 +03:00
fb767debee
gnu: qtwebsockets: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtwebsockets): Update to 5.6.1-1.
2016-06-27 05:24:58 +03:00
4254b206b4
gnu: qtconnectivity: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtconnectivity): Update to 5.6.1-1.
2016-06-27 05:24:56 +03:00
f3a3210cfd
gnu: qtdeclarative: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtdeclarative): Update to 5.6.1-1.
2016-06-27 05:24:53 +03:00
d547a1970d
gnu: qtxmlpatterns: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtxmlpatterns): Update to 5.6.1-1.
2016-06-27 05:24:51 +03:00
0835e22816
gnu: qtx11extras: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtx11extras): Update to 5.6.1-1.
2016-06-27 05:24:49 +03:00
1c16029b7f
gnu: qtimageformats: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtimageformats): Update to 5.6.1-1.
2016-06-27 05:24:46 +03:00
7de7d8a639
gnu: qtsvg: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtsvg): Update to 5.6.1-1.
2016-06-27 05:24:44 +03:00
Ben Woodcroft