1400776f52
Update NEWS.
2018-07-05 17:19:09 +02:00
5149aeb7e6
gnu: pigx: Update to 0.0.3.
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* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.3.
2018-07-05 16:02:48 +02:00
fe44e654b4
gnu: arb: Update to 2.13.0.
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* gnu/packages/algebra.scm (arb): Update to 2.13.0.
2018-07-05 15:25:37 +02:00
aa388dc7b9
gnu: Add r-rots.
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* gnu/packages/bioconductor.scm (r-rots): New variable.
2018-07-05 15:08:44 +02:00
f4235c0eca
gnu: Add r-glimma.
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* gnu/packages/bioconductor.scm (r-glimma): New variable.
2018-07-05 15:08:44 +02:00
5da0e14285
gnu: Add r-goseq.
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* gnu/packages/bioconductor.scm (r-goseq): New variable.
2018-07-05 15:08:44 +02:00
27c51606ae
gnu: Add r-ctc.
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* gnu/packages/bioconductor.scm (r-ctc): New variable.
2018-07-05 15:08:44 +02:00
2cc5110832
gnu: Add r-genelendatabase.
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* gnu/packages/bioconductor.scm (r-genelendatabase): New variable.
2018-07-05 15:08:44 +02:00
fa69759963
gnu: Add r-argparse.
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* gnu/packages/cran.scm (r-argparse): New variable.
2018-07-05 15:08:44 +02:00
3629622bc8
gnu: Add r-findpython.
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* gnu/packages/cran.scm (r-findpython): New variable.
2018-07-05 15:08:44 +02:00
aec7d6be70
gnu: r-getopt: Move from bioinformatics to cran.
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* gnu/packages/bioinformatics.scm (r-getopt): Move from here...
* gnu/packages/cran.scm (r-getopt): ...to here.
2018-07-05 15:08:44 +02:00
87ba9508e9
gnu: Add r-goplot.
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* gnu/packages/cran.scm (r-goplot): New variable.
2018-07-05 15:08:44 +02:00
64abd24517
gnu: Add r-biasedurn.
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* gnu/packages/cran.scm (r-biasedurn): New variable.
2018-07-05 15:08:44 +02:00
5adb2df0a2
pack: Use guile-for-build for the target system.
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Until now, running "guix pack -s i686-linux" on an x86_64-linux machine,
for instance, would use an x86_64 guile for module derivations. This
was OK until now, but would break when passing "--localstatedir" due to
the introduction of guile-sqlite3: we'd be using the i686 guile-sqlite3
along with the x86_64 guile.
* guix/scripts/pack.scm (guix-pack): Pass the 'system option from OPTS
to 'package-derivation'.
2018-07-05 13:35:21 +02:00
633b6b6197
nls: Update 'fr' translation.
2018-07-05 11:56:17 +02:00
63899cc774
doc: Update package count.
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* doc/guix.texi (Limitations): Update number.
2018-07-05 11:54:23 +02:00
900e6d4051
doc: Mention ARM and AArch64 bootloaders.
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* doc/guix.texi (Bootloader Configuration): Mention ARM and AArch64.
Add missing uses of @code.
2018-07-05 11:53:36 +02:00
fc0e663f78
doc: Improve UEFI/BIOS bootloader documentation.
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Partly fixes <https://bugs.gnu.org/30312 >.
* doc/guix.texi (Preparing for Installation): Add note on how to choose
between UEFI and BIOS.
(Using the Configuration System)[Bootloader]: New subsubsection.
(Bootloader Configuration): Expound on the bootloader type and target.
* gnu/system/examples/desktop.tmpl: Switch to UEFI.
* gnu/system/examples/bare-bones.tmpl: Explicitly mention "legacy" and
"BIOS" in the comments.
2018-07-05 11:44:46 +02:00
0a562e46ff
gnu: qtox: Update to 1.16.1.
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* gnu/packages/messaging.scm (qtox): Update to 1.16.1.
2018-07-05 08:35:01 +02:00
ac3accd44b
gnu: emacs-async: Update to 1.9.3.
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* gnu/packages/emacs.scm (emacs-async): Update to 1.9.3.
[source]: Update URI.
2018-07-05 02:35:04 +02:00
41770337d0
gnu: nml: Update to 0.4.5.
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* gnu/packages/game-development.scm (nml): Update to 0.4.5.
2018-07-05 02:35:04 +02:00
df0fd7bfe0
gnu: nml: Use HTTPS home page.
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* gnu/packages/game-development.scm (nml)[home-page]: Use HTTPS.
2018-07-05 02:35:04 +02:00
4294f7dfea
gnu: r-lava: Update to 1.6.2.
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* gnu/packages/cran.scm (r-lava): Update to 1.6.2.
2018-07-05 02:35:03 +02:00
8144badc76
gnu: r-broom: Update to 0.4.5.
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* gnu/packages/cran.scm (r-broom): Update to 0.4.5.
2018-07-05 02:35:03 +02:00
6e19d50e32
gnu: r-broom: Use HTTPS home page.
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* gnu/packages/cran.scm (r-broom)[home-page]: Use HTTPS.
2018-07-05 02:35:03 +02:00
142869f80f
Don't force colour in aliases.
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* gnu/system/shadow.scm (default-skeletons): Substitute ‘--color=auto’
for ‘--color’ (which implies ‘=always’) in aliases.
* doc/guix.texi (G-Expressions): Also adjust examples as that makes
more sense.
2018-07-05 02:35:03 +02:00
1e6191bb55
gnu: gtkwave: Mark up description.
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* gnu/packages/fpga.scm (gtkwave)[description]: Use @dfn.
2018-07-05 02:35:02 +02:00
0b04259184
gnu: exempi: Mark up description.
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* gnu/packages/freedesktop.scm (exempi)[description]: Use @dfn.
2018-07-05 02:35:02 +02:00
fef7f8f692
gnu: keepalived: Update to 2.0.5.
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* gnu/packages/cluster.scm (keepalived): Update to 2.0.5.
2018-07-05 02:35:02 +02:00
ba8528e759
gnu: inxi: Update to 3.0.14-1.
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* gnu/packages/admin.scm (inxi-minimal): Update to 3.0.14-1.
2018-07-05 02:35:02 +02:00
d0d0f17768
gnu: linux-libre: Update to 4.17.4.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.4.
(%linux-libre-hash): Update hash.
2018-07-04 19:30:19 -04:00
75b27002eb
gnu: linux-libre@4.14: Update to 4.14.53.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.53.
(%linux-libre-4.14-hash): Update hash.
2018-07-04 19:30:17 -04:00
d1b2611d22
gnu: linux-libre@4.9: Update to 4.9.111.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.111.
2018-07-04 19:30:14 -04:00
a6a252e01d
gnu: linux-libre@4.4: Update to 4.4.139.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.139.
2018-07-04 19:30:12 -04:00
cc78392923
gnu: Remove linux-libre@4.1.
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* gnu/packages/linux.scm (linux-libre-4.1): Remove variable.
* gnu/packages/aux-files/linux-libre/4.1-i686.conf,
gnu/packages/aux-files/linux-libre/4.1-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove them.
2018-07-04 19:30:06 -04:00
08d1a8b138
gnu: pigx-scrnaseq: Update to 0.0.6.
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* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.6.
[arguments]: Remove "wrap-executable" phase.
2018-07-05 00:52:31 +02:00
a043b5b81a
services: mingetty: Use '--nohangup'.
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See the discussion at
<https://lists.gnu.org/archive/html/guix-devel/2018-07/msg00049.html >.
* gnu/services/base.scm (mingetty-shepherd-service): Pass "--nohangup"
to mingetty.
2018-07-05 00:14:01 +02:00
9fd877247d
system: Default .bashrc uses '--color=auto' for grep and ls.
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Reported by Tobias Geerinckx-Rice <me@tobias.gr>
and Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.
* gnu/system/shadow.scm (default-skeletons)["bashrc"]: Use
'--color=auto' instead of '--color'.
2018-07-04 21:52:23 +02:00
137bd98353
gnu: maven: Fix maven crash when compiling java8 code.
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* gnu/packages/maven.scm (maven)[arguments]: Configure classloading
properly instead of adding jars to maven's classpath.
2018-07-04 21:29:23 +02:00
892a5647de
gnu: maven-compat: Fix test failure.
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* gnu/packages/maven.scm (maven-compat)[arguments]: Add
recreate-removed-jar phase.
2018-07-04 21:09:56 +02:00
d440df618d
gnu: maven-artifact: Update to 3.5.4.
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* gnu/packages/maven.scm (maven-artifact): Update to 3.5.4.
(maven-core)[arguments]: Use new version.
2018-07-04 21:08:08 +02:00
8d66cda690
gnu: maven-wagon-provider-api: Update to 3.1.0.
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* gnu/packages/maven.scm (maven-wagon-provider-api): Update to 3.1.0.
2018-07-04 21:06:24 +02:00
a70182b099
gnu: java-plexus-compiler-api: Update to 2.8.4.
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* gnu/packages/java.scm (java-plexus-compiler-api): Update to 2.8.4.
2018-07-04 21:05:36 +02:00
ff5cd137ef
nls: Update 'fr' translation.
2018-07-04 21:03:10 +02:00
42226063f6
vm: Disable KVM on i386.
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* gnu/build/vm.scm (load-in-linux-vm): Disable KVM on i386.
2018-07-04 15:26:21 +02:00
b53a0c882d
gnu: ledger: Use HTTPS home page URI.
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* gnu/packages/finance.scm (ledger)[home-page]: Use HTTPS URI.
2018-07-04 18:16:34 +05:30
1f3c4ba8f3
gnu: ledger: Use invoke and fix #t return.
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* gnu/packages/finance.scm (ledger)[arguments]: Replace system* with invoke in
build-doc phase. Remove #t return from relocate-elisp phase since
emacs-generate-autoloads already returns #t.
2018-07-04 18:13:31 +05:30
948e888d3a
gnu: ledger: Skip failing test.
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* gnu/packages/finance.scm (ledger)[arguments]: Set #:make-flags to skip
failing test BaselineTest_cmd-org. Replace check phase with the check phase
from gnu-build-system.
2018-07-04 18:11:30 +05:30
0207768fc9
doc: Mention the build environment.
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* doc/contributing.texi (Running Guix Before It Is Installed): Add a
note about having the dependencies available.
2018-07-04 14:36:07 +02:00
5b0c648a7c
profiles: 'info-dir-file' hook now produces 'dir.LANG' files.
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Previously, entries for 'guix.fr.info' would end up in 'dir', above the
'guix.info' entries; consequently, running 'info guix' would actually
open 'guix.fr.info', which was confusing for non-French readers.
* guix/profiles.scm (info-dir-file)[glibc-utf8-locales]: New variable.
[build](info-file-language): New procedure.
(install-info): Use it, to create 'dir.LANG' files.
Set GUIX_LOCPATH.
2018-07-04 10:52:59 +02:00
Ludovic Courtès