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Author SHA1 Message Date
David Thompson 2b2f2fc179 gnu: Add python-colorama. 
* gnu/packages/python.scm (python-colorama, python2-colorama): New
  variables.
 2016-02-02 09:23:00 -05:00
Ben J. Woodcroft ce294c0445 gnu: Update sortmerna to 2.1. 
* gnu/packages/bioinformatics.scm (sortmerna): Update to 2.1.
 2016-02-02 22:42:38 +10:00
Leo Famulari 0889321b5e gnu: ntp: Update to 4.2.8p6. 
Fixes CVE-2015-{7973, 7974, 7975, 7976, 7977, 7978, 7979, 8138, 8158}.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p6.
 2016-02-02 03:14:41 -05:00
Mark H Weaver adddd5ba3b gnu: Add linux-libre-4.1. 
* gnu/packages/linux-libre-4.1-i686.conf,
  gnu/packages/linux-libre-4.1-x86_64.conf: New files.
* Makefile.am (KCONFIGS): Add them.
* gnu/packages/linux.scm (linux-libre-4.1): New variable.
 2016-02-02 03:12:29 -05:00
Mark H Weaver 17db07061f gnu: linux-libre: Generalize 'kernel-config' to support variants. 
* gnu/packages/linux.scm (kernel-config): Rewrite to support optional
  #:variant keyword argument.
 2016-02-02 03:12:29 -05:00
Mark H Weaver 5e764e2b6f gnu: linux-libre: Update to 4.4.1. 
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.1.
  [source]: Remove patch.
 2016-02-01 23:47:35 -05:00
Leo Famulari 4efc8eb275 gnu: Update socat to 1.7.3.1. 
* gnu/packages/networking.scm (socat): Update to 1.7.3.1.
 2016-02-01 19:00:39 -05:00
Leo Famulari 2c5e497672 gnu: keepassx: Update to 2.0.1. 
* gnu/packages/password-utils.scm (keepassx): Update to 2.0.1.
 2016-02-01 18:26:41 -05:00
Eric Bavier 6009df6391 gnu: ccache: Update to 3.2.4. 
* gnu/packages/ccache.scm (ccache): Update to 3.2.4.
 2016-02-01 15:01:20 -06:00
Ludovic Courtès efdcb6f29c install: Make it clear that we refer to the root by label. 
* gnu/system/install.scm (installation-os): Use (title 'label) for the
root file system.
 2016-02-01 08:59:13 +01:00
Eric Bavier e3f755f44c gnu: Add pinball. 
* gnu/packages/games.scm (pinball): New variable.
* gnu/packages/patches/pinball-const-fix.patch,
  gnu/packages/patches/pinball-cstddef.patch,
  gnu/packages/patches/pinball-missing-separators.patch,
  gnu/packages/patches/pinball-src-deps.patch,
  gnu/packages/patches/pinball-system-ltdl.patch: New patches.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-01-31 23:46:30 -06:00
Efraim Flashner 917708c276 gnu: python-apsw: Update to 3.9.2-r1. 
* gnu/packages/python.scm (python-apsw): Update to 3.9.2-r1.
[source]: Change to pypi uri syntax.
 2016-02-01 06:18:58 +02:00
Efraim Flashner 55ba649dfb gnu: wayland: Build documentation. 
* gnu/packages/freedesktop.scm (wayland)[native-inputs]: Add graphviz.
 2016-02-01 06:18:58 +02:00
Efraim Flashner f1d9231d9a gnu: python-pillow: Update to 3.1.0. 
* gnu/packages/python.scm (python-pillow): Update to 3.1.0.
[source]: Change to pypi uri syntax.
 2016-02-01 06:18:58 +02:00
David Thompson 2a068aecbf gnu: Add aseprite. 
* gnu/packages/game-development.scm (aseprite): New variable.
 2016-01-31 15:44:20 -05:00
David Thompson 154f6156c0 gnu: Add allegro-4. 
* gnu/packages/game-development.scm (allegro-4): New variable.
 2016-01-31 15:44:19 -05:00
David Thompson d1a0bba029 gnu: obs: Update to 0.13.0. 
* gnu/packages/video.scm (obs): Upgrade to 0.13.0.
 2016-01-31 15:32:18 -05:00
Efraim Flashner e5a2edeba0 gnu: perl-tk: Update to 804.033. 
* gnu/packages/tcl.scm (perl-tk): Update to 804.033.
[source]: Remove patch.
* gnu/packages/patches/perl-tk-x11-discover.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch.
 2016-01-31 14:36:08 +02:00
宋文武 39eefcee97 gnu: weechat: Update to 1.4. 
* gnu/packages/weechat.scm (weechat): Update to 1.4.
 2016-01-31 17:12:46 +08:00
Efraim Flashner 692bb77da9 gnu: pumpa: Update to 0.9.2. 
* gnu/packages/pumpio.scm (pumpa): Update to 0.9.2.
[source]: Add 'file-name' field.
 2016-01-30 22:39:05 +02:00
Alex Kost 171a0a13a4 Rename 'dmd' to 'shepherd' in comments and strings. 
* build-aux/hydra/demo-os.scm (operating-system)[issue]: Point to
  shepherd instead of dmd.
* ROADMAP: Likewise.
* gnu/build/install.scm (directives): Adjust comment.
 2016-01-29 20:21:54 +03:00
Alex Kost d4053c710b services: Rename 'dmd' services to 'shepherd'. 
* gnu/services/shepherd.scm (dmd-root-service-type, %dmd-root-service)
  (dmd-service-type, <dmd-service>, dmd-service, dmd-service?)
  (make-dmd-service, dmd-service-documentation, dmd-service-provision)
  (dmd-service-requirement, dmd-service-respawn, dmd-service-start)
  (dmd-service-stop, dmd-service-auto-start?, dmd-service-modules)
  (dmd-service-imported-modules, dmd-service-file-name, dmd-service-file)
  (dmd-service-back-edges): Rename to...
  (shepherd-root-service-type, %shepherd-root-service, shepherd-service-type)
  (<shepherd-service>, shepherd-service, shepherd-service?)
  (make-shepherd-service, shepherd-service-documentation)
  (shepherd-service-provision, shepherd-service-requirement)
  (shepherd-service-respawn, shepherd-service-start)
  (shepherd-service-stop, shepherd-service-auto-start?)
  (shepherd-service-modules, shepherd-service-imported-modules)
  (shepherd-service-file-name, shepherd-service-file)
  (shepherd-service-back-edges): ...this
* gnu/services.scm: Adjust comments.
* gnu/services/avahi.scm (avahi-dmd-service): Rename to...
  (avahi-shepherd-service): ... this.
* gnu/services/base.scm (%root-file-system-dmd-service)
  (file-system->dmd-service-name, mapped-device->dmd-service-name)
  (dependency->dmd-service-name, file-system-dmd-service)
  (mingetty-dmd-service, nscd-dmd-service, guix-dmd-service)
  (guix-publish-dmd-service, udev-dmd-service, gpm-dmd-service): Rename to...
  (%root-file-system-shepherd-service)
  (file-system->shepherd-service-name, mapped-device->shepherd-service-name)
  (dependency->shepherd-service-name, file-system-shepherd-service)
  (mingetty-shepherd-service, nscd-shepherd-service, guix-shepherd-service)
  (guix-publish-shepherd-service, udev-shepherd-service)
  (gpm-shepherd-service): ... this.
* gnu/services/databases.scm (postgresql-dmd-service): Rename to...
  (postgresql-shepherd-service): ... this.
* gnu/services/desktop.scm (upower-dmd-service, elogind-dmd-service):
  Rename to...
  (upower-shepherd-service, elogind-shepherd-service): ... this.
* gnu/services/dbus.scm (dbus-dmd-service): Rename to...
  (dbus-shepherd-service): ... this.
* gnu/services/lirc.scm (lirc-dmd-service): Rename to...
  (lirc-shepherd-service): ... this.
* gnu/services/mail.scm (dovecot-dmd-service): Rename to...
  (dovecot-shepherd-service): ... this.
* gnu/services/networking.scm (ntp-dmd-service, tor-dmd-service)
  (bitlbee-dmd-service, wicd-dmd-service, network-manager-dmd-service): Rename to...
  (dbus-shepherd-service): ... this.
* gnu/services/ssh.scm (lsh-dmd-service): Rename to...
  (lsh-shepherd-service): ... this.
* gnu/services/web.scm (nginx-dmd-service): Rename to...
  (nginx-shepherd-service): ... this.
* gnu/services/xorg.scm (slim-dmd-service): Rename to...
  (slim-shepherd-service): ... this.
* gnu/system.scm (essential-services): Use '%shepherd-root-service'.
* gnu/system/install.scm (cow-store-service-type): Adjust accordingly.
* guix/scripts/system.scm (dmd-service-node-label, dmd-service-node-type)
  (export-dmd-graph): Likewise.
* tests/guix-system.sh: Likewise.
* tests/services.scm ("dmd-service-back-edges"): Rename to...
  ("shepherd-service-back-edges"): Adjust accordingly.
* doc/guix.texi: Likewise.
* doc/images/service-graph.dot: Use 'shepherd' service name.
 2016-01-29 20:21:53 +03:00
Alex Kost 26b94866ad services: xorg: Use 'shepherd' instead of 'dmd'. 
* gnu/services/xorg.scm (slim-configuration-dmd): Rename to...
  (slim-configuration-shepherd): ... this.
  (slim-shepherd-service): Adjust accordingly.
  (slim-service): Take 'shepherd' keyword argument.
 2016-01-29 20:21:53 +03:00
Alex Kost fe1ad5f5db services: shepherd: Rename shepherd configuration file. 
* gnu/services/shepherd.scm (dmd-configuration-file): Rename to...
  (shepherd-configuration-file): ... this.  Use "shepherd.conf" name.
  (dmd-boot-gexp): Use it.
 2016-01-29 20:21:53 +03:00
Alex Kost 0190c1c02f Rename (gnu services dmd) to (gnu services shepherd). 
* gnu/services/dmd.scm: Rename to...
* gnu/services/shepherd.scm: ... this.
* gnu/system.scm: Use it.
* gnu/system/install.scm: Likewise.
* gnu/services/xorg.scm: Likewise.
* gnu/services/web.scm: Likewise.
* gnu/services/ssh.scm: Likewise.
* gnu/services/networking.scm: Likewise.
* gnu/services/mail.scm: Likewise.
* gnu/services/lirc.scm: Likewise.
* gnu/services/desktop.scm: Likewise.
* gnu/services/dbus.scm: Likewise.
* gnu/services/databases.scm: Likewise.
* gnu/services/base.scm: Likewise.
* gnu/services/avahi.scm: Likewise.
* guix/scripts/system.scm: Likewise.
* tests/services.scm: Likewise.
* tests/guix-system.sh: Likewise.
* doc/guix.texi (Shepherd Services): Adjust accordingly.
* gnu-system.am (GNU_SYSTEM_MODULES): Likewise.
* po/guix/POTFILES.in: Likewise.
 2016-01-29 20:21:53 +03:00
Alex Kost b8c02c18b4 Rename '/root/etc/dmd' directory and 'do-not-kill' file. 
* gnu/services/base.scm (%do-not-kill-file): Rename to
  "/etc/shepherd/do-not-kill".
* gnu/build/linux-boot.scm (mount-root-file-system): Rename
  "/root/etc/dmd" to "/root/etc/shepherd".
 2016-01-29 20:20:19 +03:00
Alex Kost 34044d551f Use 'shepherd' instead of 'dmd' as init system. 
* gnu/services/dmd.scm (dmd-boot-gexp): Use binary from 'shepherd' package.
  (dmd-root-service-type): Use 'shepherd' package.
  (%default-modules): Use (shepherd service) module.
* gnu/services/base.scm (%root-file-system-dmd-service): Use
  'stop-logging' procedure to close shepherd log.
 2016-01-29 12:07:32 +03:00
Alex Kost d312a8328d gnu: elogind: Use 'shepherd' input. 
* gnu/packages/freedesktop.scm (elogind)[inputs]: Replace 'dmd' with
  'shepherd'.
 2016-01-29 12:07:32 +03:00
Federico Beffa 13fe4891fa gnu: emacs: Find packages in "~/.guix-profile". 
* gnu/packages/emacs.scm (emacs)[inputs]: Add 'guix-src' input.
  [arguments]: Add 'install-site-start' phase.

Co-authored-by: Alex Kost <alezost@gmail.com>
 2016-01-29 11:13:15 +03:00
Alex Kost 2c776157ad gnu: guix: Update development snapshot to c3f29bc. 
* gnu/packages/package-management.scm (guix-devel): Update to c3f29bc.
 2016-01-29 11:13:15 +03:00
Rene Saavedra c3f29bc928 gnu: Add gtk-vnc. 
* gnu/packages/gnome.scm (gtk-vnc): New variable.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
 2016-01-29 08:36:07 +08:00
Efraim Flashner f88f0d20e4 gnu: ffmpeg: Add hardware acceleration, opengl support. 
* gnu/packages/video.scm (ffmpeg)[inputs]: Add libvdpau, libx11, mesa.
[arguments]: Add configure-flags '--enable-opengl' '--enable-x11grab'.
 2016-01-28 18:14:58 +02:00
Leo Famulari 03675cad53 gnu: icedtea-7: Update to 2.6.4. 
Fixes CVE-2015-{7575, 8126, 8472} and CVE-2016-{0402, 0448, 0466, 0483,
0494}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.4.
 2016-01-28 08:48:35 -05:00
Leo Famulari 559239af7a gnu: icedtea-6: Update to 1.13.10. 
Fixes CVE-2015-{8126, 8472} and CVE-2016-{0402, 0448, 0466, 0483, 0494}.

* gnu/packages/java.scm (icedtea-6): Update to 1.13.10.
 2016-01-28 08:48:35 -05:00
Mark H Weaver 593c366bde Merge branch 'core-updates' 2016-01-28 07:29:13 -05:00
Ludovic Courtès 133056bd74 gnu: shepherd: Update to 0.3. 
* gnu/packages/admin.scm (shepherd): Update to 0.3.
 2016-01-28 11:45:03 +01:00
Mark H Weaver 29a780147d gnu: icecat: Add fixes for CVE-2016-{1930,1935} and other bugs. 
* gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch,
  gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch: New
  files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-01-28 00:34:20 -05:00
Ludovic Courtès 9a8b9eb8de services: guix: Provide Guix via 'profile-service-type'. 
* gnu/services/base.scm (guix-service-type): Extend
PROFILE-SERVICE-TYPE.
* gnu/system.scm (%base-packages): Remove GUIX.
 2016-01-27 15:48:35 +01:00
Ludovic Courtès c273d81bfa services: dmd: Provide dmd via 'profile-service-type'. 
* gnu/services/dmd.scm (dmd-root-service-type): Extend
PROFILE-SERVICE-TYPE.
* gnu/system.scm (%base-packages): Remove dmd.
 2016-01-27 15:48:35 +01:00
Ludovic Courtès e932d371e5 gnu: Add snapshot of the GNU Shepherd. 
* gnu/packages/admin.scm (shepherd): New variable.
 2016-01-27 15:48:35 +01:00
Ben Woodcroft d114ceebac gnu: Add ruby-http-cookie. 
* gnu/packages/ruby.scm (ruby-http-cookie): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 5799aadde4 gnu: Add ruby-domain-name. 
* gnu/packages/ruby.scm (ruby-domain-name): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 3b44bcdfcd gnu: Add ruby-unf. 
* gnu/packages/ruby.scm (ruby-unf): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 6f390716b6 gnu: Add ruby-shoulda. 
* gnu/packages/ruby.scm (ruby-shoulda): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 3885c58b25 gnu: Add ruby-shoulda-matchers-2. 
* gnu/packages/ruby.scm (ruby-shoulda-matchers-2): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft e4fea00896 gnu: Add ruby-shoulda-matchers. 
* gnu/packages/ruby.scm (ruby-shoulda-matchers): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 4dfa39cc67 gnu: Add ruby-shoulda-context. 
* gnu/packages/ruby.scm (ruby-shoulda-context): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 4fea500bb1 gnu: Add ruby-sqlite3. 
* gnu/packages/ruby.scm (ruby-sqlite3): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft d39b606c88 gnu: Add ruby-mime-types. 
* gnu/packages/ruby.scm (ruby-mime-types): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft eb5e0bd96e gnu: Add ruby-fivemat. 
* gnu/packages/ruby.scm (ruby-fivemat): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 32d1c06ffa gnu: Add ruby-mime-types-data. 
* gnu/packages/ruby.scm (ruby-mime-types-data): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft e582fa93a8 gnu: Add ruby-minitest-rg. 
* gnu/packages/ruby.scm (ruby-minitest-rg): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft e07ef1d625 gnu: Add ruby-minitest-bonus-assertions. 
* gnu/packages/ruby.scm (ruby-minitest-bonus-assertions): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 685d0d2fbe gnu: Add ruby-minitest-moar. 
* gnu/packages/ruby.scm (ruby-minitest-moar): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 99fc5cd577 gnu: Add ruby-minitest-pretty-diff. 
* gnu/packages/ruby.scm (ruby-minitest-pretty-diff): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 39dc0eb502 gnu: Add ruby-minitest-focus. 
* gnu/packages/ruby.scm (ruby-minitest-focus): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft 8092e33376 gnu: Add ruby-turn. 
* gnu/packages/ruby.scm (ruby-turn): New variable.
 2016-01-28 00:08:32 +10:00
Efraim Flashner f66842dccc gnu: Add aria2. 
* gnu/packages/bittorrent.scm (aria2): New variable.
 2016-01-27 14:39:31 +02:00
Efraim Flashner cd44f1c1b0 gnu: c-ares: Move to adns.scm. 
* gnu/packages/aria2.scm (c-ares): Move to...
* gnu/packages/adns.scm (c-ares): ... here.
* gnu/packages/aria2.scm: Remove file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove aria2.scm.
 2016-01-27 14:13:45 +02:00
Andreas Enge bb2120cd1d gnu: libressl: Update to 2.2.5. 
* gnu/packages/tls.scm (libressl): Update to 2.2.5.
 2016-01-26 21:40:35 +01:00
Leo Famulari 7432386adb gnu: nginx: Update to 1.8.1 [fixes CVE-2016-{0742,0746,0747}]. 
* gnu/packages/web.scm (nginx): Update to 1.8.1.
 2016-01-26 15:27:58 -05:00
Ricardo Wurmus 61eecd71cc gnu: alsa-modular-synth: Update to 2.1.2. 
* gnu/packages/audio.scm (alsa-modular-synth): Update to 2.1.2.
 2016-01-26 18:46:54 +01:00
Andreas Enge a394c60aa3 gnu: hop: Add input avahi. 
gnu/packages/scheme.scm (hop)[inputs]: Add avahi.
 2016-01-26 15:10:23 +01:00
Ben Woodcroft edf8caae6d gnu: Add ruby-ttfunk. 
* gnu/packages/ruby.scm (ruby-ttfunk): New variable.
 2016-01-26 16:27:40 +10:00
Ben Woodcroft acb6be4298 gnu: Add ruby-ascii85. 
* gnu/packages/ruby.scm (ruby-ascii85): New variable.
 2016-01-26 16:25:11 +10:00
Ben Woodcroft f3e085a8d5 gnu: Add ruby-afm. 
* gnu/packages/ruby.scm (ruby-afm): New variable.
 2016-01-26 16:22:17 +10:00
Ben Woodcroft 1f1d71e09f gnu: Add ruby-rc4. 
* gnu/packages/ruby.scm (ruby-rc4): New variable.
 2016-01-26 16:21:05 +10:00
Ben Woodcroft 72ccbfe314 gnu: Add ruby-hashery. 
* gnu/packages/ruby.scm (ruby-hashery): New variable.
 2016-01-26 16:19:41 +10:00
Ben Woodcroft 0832804ed5 gnu: Add ruby-rubytest-cli. 
* gnu/packages/ruby.scm (ruby-rubytest-cli): New variable.
 2016-01-26 16:17:01 +10:00
Ben Woodcroft 78bb471f37 gnu: Add ruby-lemon. 
* gnu/packages/ruby.scm (ruby-lemon): New variable.
 2016-01-26 16:15:24 +10:00
Ben Woodcroft 9273ee8f44 gnu: Add ruby-ae. 
* gnu/packages/ruby.scm (ruby-ae): New variable.
 2016-01-26 16:11:49 +10:00
Ben Woodcroft 120fc74b21 gnu: Add ruby-qed. 
* gnu/packages/ruby.scm (ruby-qed): New variable.
 2016-01-26 16:06:10 +10:00
Ben Woodcroft 90fcedf220 gnu: Add ruby-brass. 
* gnu/packages/ruby.scm (ruby-brass): New variable.
 2016-01-26 16:02:15 +10:00
Ben Woodcroft 7c8131c76b gnu: Add ruby-rubytest. 
* gnu/packages/ruby.scm (ruby-rubytest): New variable.
 2016-01-26 15:59:39 +10:00
Ben Woodcroft a78d62f432 gnu: sra-tools: Update to 2.5.7. 
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.7.
 2016-01-26 10:59:13 +10:00
Ben Woodcroft fe91666b79 gnu: ncbi-vdb: Update to 2.5.7. 
gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.7.
 2016-01-26 10:59:13 +10:00
Ben Woodcroft d3b39bc231 gnu: ngs-sdk: Update to 1.2.3. 
gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.3.
 2016-01-26 10:59:13 +10:00
Andreas Enge 46854e99ca gnu: webkitgtk-2.4, webkitgtk/gtk+-2, qt: Disable parallel builds. 
* gnu/packages/webkit.scm (webkitgtk-2.4, webkitgtk/gtk+-2):
  Disable parallel builds as suggested in
  https://lists.gnu.org/archive/html/guix-devel/2016-01/msg00837.html .
* gnu/packages/qt.scm (qt): Likewise.
 2016-01-25 23:33:54 +01:00
Alex Kost 0833d0c025 gnu: aspell-dict-en: Update to 2016.01.19-0. 
* gnu/packages/aspell.scm (aspell-dict-en): Update to 2016.01.19-0.
 2016-01-25 22:11:47 +03:00
Efraim Flashner 8581f4c195 gnu: Add python-efl. 
* gnu/packages/enlightenment.scm (python-efl, python2-efl): New variables.
 2016-01-25 11:41:23 +02:00
Efraim Flashner 2259442b15 gnu: cmocka: New variable. 
* gnu/packages/check.scm (cmocka): New variable.
 2016-01-25 11:39:42 +02:00
Ben Woodcroft 23f3cbb8de gnu: Add pixz. 
* gnu/packages/compression.scm (pixz): New variable.
 2016-01-25 18:45:33 +10:00
Mark H Weaver 412bee5e29 Merge branch 'master' into core-updates 2016-01-24 21:04:54 -05:00
Ludovic Courtès f6afc48008 gnu: grue-hunter: Use 'https' URL. 
* gnu/packages/grue-hunter.scm (grue-hunter): Use 'https' URL.
 2016-01-25 00:11:22 +01:00
Ben Woodcroft bcadaf0050 gnu: Add sortmerna. 
* gnu/packages/bioinformatics.scm (sortmerna): New variable.
 2016-01-25 08:35:11 +10:00
Andreas Enge 447f3ae7c1 gnu: calibre: Update to 2.49.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.49.0.
 2016-01-24 20:12:05 +01:00
Ricardo Wurmus 541ed7b030 gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3. 
* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable
  building libstdc++-v3 and enable building C++ compiler.
 2016-01-24 14:25:20 +01:00
Ricardo Wurmus a763ce7da9 gnu: Add Qtractor. 
* gnu/packages/music.scm (qtractor): New variable.
 2016-01-24 14:20:52 +01:00
Ricardo Wurmus 8ddc5d5723 gnu: yoshimi: Update to 1.3.8.2. 
* gnu/packages/music.scm (yoshimi): Update to 1.3.8.2.
 2016-01-24 14:19:29 +01:00
Efraim Flashner 6b6a62dd05 gnu: privoxy: Update to 3.0.24. 
* gnu/packages/tor.scm (privoxy): Update to 3.0.24.
 2016-01-24 09:20:55 +02:00
Efraim Flashner be866fb13e gnu: tor: Update to 0.2.7.6. 
* gnu/packages/tor.scm (tor): Update to 0.2.7.6.
 2016-01-24 07:21:33 +02:00
Efraim Flashner 17206f72ed gnu: myrepos: Update to 1.20160123. 
* gnu/packages/version-control.scm (myrepos): Update to 1.20160123.
 2016-01-24 07:04:05 +02:00
Efraim Flashner 4c73302739 gnu: nano: Update to 2.5.1. 
* gnu/packages/nano.scm (nano): Update to 2.5.1.
 2016-01-24 06:46:01 +02:00
Mark H Weaver c5184468f5 build: container: Make 'unprivileged-user-namespace-supported?' more robust. 
* gnu/build/linux-container.scm (unprivileged-user-namespace-supported?): Only
  read and check the first character, to cope with a possible newline in the
  (pseudo-)file.
 2016-01-23 18:44:03 -05:00
Leo Famulari fe17fb4a2c gnu: letsencrypt and acme: Update to 0.2.0. 
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.2.0.
(acme): Update to 0.2.0.
 2016-01-23 17:39:08 -05:00
Efraim Flashner 21565719e5 gnu: claws-mail: Update to 3.13.2. 
* gnu/packages/mail.scm (claws-mail): Update to 3.13.2.
 2016-01-23 20:13:31 +02:00
Ricardo Wurmus 3a40a92c73 gnu: Add cufflinks. 
* gnu/packages/bioinformatics.scm (cufflinks): New variable.
 2016-01-23 09:15:11 +01:00
Ricardo Wurmus 94ce537eac gnu: Add TopHat. 
* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-23 08:53:10 +01:00
Ricardo Wurmus 3062d750b4 gnu: star: Update to 2.5.1b. 
* gnu/packages/bioinformatics.scm (star): Update to 2.5.1b.
[source]: Remove bundled htslib sources and pre-built binaries.
[arguments]: Add phase "do-not-use-bundled-htslib".
[inputs]: Add "htslib".
 2016-01-23 08:40:14 +01:00
Ricardo Wurmus c0266e8d03 gnu: star: Use "modify-phases" syntax. 
* gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phases"
  syntax.
 2016-01-23 08:40:14 +01:00