Reported by Carlos Carleos <carleos@uniovi.es>.
* gnu/packages/skribilo.scm (skribilo)[inputs]: Move
GUILE-READER/GUILE-2.0 and GUILE-LIB to...
[propagated-inputs]: ... here. New field.
* gnu/packages/base.scm (coreutils)[arguments] <patch-shell-references>:
Leave src/split.c unpatched. Set $SHELL. Use .../bin/sh and not
.../bin/bash in tests.
This fixes a top-level circular dependency between linux.scm and
base.scm introduced in 2e92375.
* gnu/packages/base.scm (glibc-final): Remove call to
'package-with-restricted-references', and use an 'arguments' field
instead.
This fixes a bug whereby the bootstrap-glibc headers could be picked up
when building libc.so, which could be noticed by the fact that the
.debug files contained references to bootstrap-glibc.
* gnu/packages/base.scm (glibc-final-with-bootstrap-bash)[arguments]:
Add 'pre-configure' phase.
[inputs]: Remove 'alist-delete' call.
This fixes a bug whereby Findutils' 'updatedb' script would retain a
reference to the bootstrap binaries ('sort', etc.)
* gnu/packages/base.scm (coreutils-final, %boot5-inputs): New variables.
(%final-inputs): Use them.
* gnu/packages/gettext.scm (gnu-gettext): Upgrade to 0.19.
[arguments] <phases>: Remove now unneeded 'link-expat' phase. Patch
lang-sh and msgfilter test scripts; patch msginit.c and project-id.
Add #:make-flags.
This partly reverts commit 185f669 ("services: Make sure the store's
group is the build group.")
* gnu/services/base.scm (guix-service)[activate]: Remove 'chown' call.
Add 'id' field to 'user-group' form.
* guix/build/install.scm (directives): Set the store's GID to 30000.
* gnu/services/base.scm (guix-service)[activate]: New variable. Add
'chown' call for (%store-prefix). Set the 'activate' field to
ACTIVATE.
* guix/build/install.scm (directives): Add comment about STORE's group.
* gnu/packages/linux.scm (module-init-tools)[source](patches): New
field.
* gnu/packages/patches/module-init-tools-moduledir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/system.scm (etc-directory): Add #:kernel parameter. Set
'LINUX_MODULE_DIRECTORY' in bashrc.
(operating-system-etc-directory): Pass #:kernel to 'etc-directory'.
* gnu/system.scm (<operating-system>)[packages]: Change default value to
%BASE-PACKAGES.
(%base-packages): New variable.
* gnu/system/install.scm (installation-os): Use it when defining the
'packages' field.
* doc/guix.texi (Using the Configuration System): Use %BASE-PACKAGES in
example. Remove now unneeded module imports. Explain this.
* gnu/system/file-systems.scm (<file-system>)[title]: New field.
* gnu/services/base.scm (file-system-service): Add #:title parameter.
In 'start' gexp, use 'canonicalize-device-spec' and honor TITLE.
* gnu/system.scm (other-file-system-services,
operating-system-root-file-system, operating-system-initrd-file):
Adjust accordingly.
* gnu/system/linux-initrd.scm (file-system->spec): Likewise.
* gnu/system/vm.scm (system-disk-image): Add 'title' field for the root
file system.
* guix/build/linux-initrd.scm (mount-file-system): Expect the second
element of SPEC to be the title.
(boot-system)[root-mount-point?, root-fs-type]: Likewise.
* gnu/services/dmd.scm (dmd-configuration-file): Select
'canonicalize-device-spec'.
* gnu/packages/linux.scm (util-linux)[source](patches): New field.
* gnu/packages/patches/util-linux-perl.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/system/vm.scm (system-disk-image)[root-label]: New variable.
Use it for the root file system, and pass it as #:file-system-label to
'qemu-image'.
* guix/build/vm.scm (format-partition): Add #:label parameter, and honor
it.
(initialize-hard-disk): Add #:file-system-label parameter, and pass it
to 'format-partition'.
* gnu/system/vm.scm (qemu-image): Add #:file-system-label parameter and
pass it to 'initialize-hard-disk'.
* gnu/packages/version-control.scm (cssc): New variable.
* gnu/packages/patches/cssc-gets-undeclared.patch: New file
* gnu/packages/patches/cssc-missing-include.patch: New file
* gnu-system.am: Add gnu/packages/patches/cssc-gets-undeclared.patch
and gnu/packages/patches/cssc-missing-include.patch
* gnu/packages/maths.scm (hdf5): Use "release" directory and not the "current"
directory for the source, which does not break on new upstream releases.
* gnu/services.scm (<service>)[activate]: New field.
* gnu/system.scm (operating-system-activation-script)[service-activations]:
New procedure. Use it, and primitive-load each activation.
* gnu/system.scm (operating-system-activation-script): New procedure,
containing most of the former 'operating-system-boot-script'.
(operating-system-boot-script): Call it, and 'primitive-load' its
result.
* guix/build/activation.scm (%booted-system): Remove.
(activate-current-system): Remove #:boot? parameter and related code.
* guix/build/vm.scm (load-in-linux-vm): When MAKE-DISK-IMAGE?, use
'-drive ...,if=virtio' for better performance.
* gnu/system/vm.scm (qemu-image): Use /dev/vda instead of /dev/sda.
This fixes a circular dependency between (gnu system) and (gnu system
linux-initrd), where the latter could end up being compiled before
'file-system-type' was defined as a macro.
* gnu/system.scm (<file-system>, %fuse-control-file-system,
%binary-format-file-system): Move to...
* gnu/system/file-systems.scm: ... here. New file.
* build-aux/hydra/demo-os.scm, gnu/system/linux-initrd.scm,
gnu/system/vm.scm: Use it.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/maths.scm (superlu-dist): New variable.
* gnu/packages/patches/superlu-dist-scotchmetis.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (scotch): New variable.
* gnu/packages/patches/scotch-test-threading.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/system/grub.scm (<grub-configuration>): New record type.
(grub-configuration-file): Add 'config' parameter; remove
#:default-entry and #:timeout. Honor CONFIG.
* gnu/system.scm (<operating-system>): Remove 'bootloader-entries'
field; remove default value for 'bootloader' field.
(operating-system-grub.cfg): Pass the 'bootloader' field to
'grub-configuration-file'.
* build-aux/hydra/demo-os.scm (bootloader): New field.
* gnu/system.scm (etc-directory): Change default value of #:profile.
Change contents of SHELLS. Use /run/current-system/profile/{s,}bin in
BASHRC.
(operating-system-boot-script)[%modules]: Add (guix build
linux-initrd). Add call to 'activate-current-system' in gexp.
(operating-system-initrd-file, operating-system-grub.cfg): New
procedures.
(operating-system-derivation): Don't build grub.cfg here and remove it
from the file union.
* gnu/system/vm.scm (qemu-image): Remove #:populate.
(operating-system-build-gid, operating-system-default-contents):
Remove.
(system-qemu-image): Remove call to
'operating-system-default-contents'. Use 'operating-system-grub.cfg'
to get grub.cfg. Add GRUB.CFG to #:inputs.
(system-qemu-image/shared-store): Likewise, but don't add GRUB.CFG to
#:inputs.
(system-qemu-image/shared-store-script): Pass --system kernel option.
* guix/build/activation.scm (%booted-system, %current-system): New
variables.
(boot-time-system, activate-current-system): New procedures.
* guix/build/install.scm (evaluate-populate-directive): Add case
for ('directory name uid gid mode).
(directives, populate-root-file-system): New procedures.
* guix/build/vm.scm (initialize-hard-disk): Replace calls to
'evaluate-populate-directive' by a call to
'populate-root-file-system'.
* gnu/services/dmd.scm (dmd-configuration-file): Use
/run/current-system/profile/bin.
* gnu/services/xorg.scm (slim-service): Likewise.
* gnu/system/vm.scm (qemu-image): Rename #:inputs-to-copy to #:inputs,
and #:initialize-store? to #:register-closures?. Add #:copy-inputs?.
Adjust build gexp accordingly.
(system-qemu-image): Remove #:initialize-store? argument and add
#:copy-inputs?.
(system-qemu-image/shared-store): Add #:inputs, #:register-closures?,
and #:copy-inputs? arguments.
* guix/build/vm.scm (register-closure): New procedure.
(MS_BIND): New variable.
(initialize-hard-disk): Rename #:initialize-store? to
#:register-closures?, #:closures-to-copy to #:closures, and add
#:copy-closures?.
Add 'target-directory' and 'target-store' variables.
Call 'populate-store' only when COPY-CLOSURES?.
Bind-mount the store to TARGET-STORE when REGISTER-CLOSURES? and not
COPY-CLOSURES?. Add call to 'register-closure'.
* gnu/system/vm.scm (virtualized-operating-system): Instead of
completely overriding 'file-systems', use 'remove' to filter out some
of those declared in OS.
(system-qemu-image): Likewise.
* guix/build/linux-initrd.scm (pidof): New procedure.
(mount-root-file-system)[mark-as-not-killable]: New procedure.
Use it for unionfs when VOLATILE-ROOT?.
* gnu/services/base.scm (%do-not-kill-file): New variable.
(user-processes-service)[stop]: Honor it.
* gnu/system.scm (<operating-system>)[skeletons]: New field.
(default-skeletons, skeleton-directory): New procedures.
(etc-directory): Add #:skeletons parameter. Call
'skeleton-directory', and produce the 'skel' sub-directory.
(operating-system-etc-directory): Pass #:skeletons to
'etc-directory'.
* gnu/packages/patches/perl-tk-x11-discover.patch: New patch.
* gnu-system.am [dist_patch_DATA]: Add it.
* gnu/packages/tcl.scm (perl-tk)[origin]: Use it.
* gnu/services/base.scm (file-system-service): New procedure.
(user-processes-service): Add 'requirements' parameter.
* gnu/services/dmd.scm (dmd-configuration-file): Use (guix build
linux-initrd).
* guix/build/linux-initrd.scm (guix): Export 'check-file-system'.
* gnu/system.scm (file-union): New procedure.
(essential-services): Use it. Add that to the returned list.
* gnu/services/dmd.scm (dmd-configuration-file): Add derivations for
the (guix build syscalls) module, and add that to the load path of
dmd.conf.
* gnu/services/base.scm (root-file-system-service): Rewrite using the
'sync' and 'mount' procedures.
* gnu/packages/gtk.scm (atk, pango, gdk-pixbuf, gtk+): Move
gobject-introspection to 'native-inputs' since it's only used at build
time.
* gnu/packages/gnome.scm (libpeas): Move pkg-config,
gobject-introspection, and intltool to 'native-inputs'.
* guix/build/linux-initrd.scm (switch-root): Delete file from the old
root. Chdir to / after 'chroot' call. Re-open file descriptors 0, 1,
and 2.
(boot-system): Move 'loading' message after the 'switch-root' call.
* gnu/system.scm (operating-system-boot-script): Add loop that closes
file descriptor before calling 'execl'.
* gnu/system.scm (operating-system-derivation)[boot-file-systems]: Keep "/".
* gnu/system/linux-initrd.scm (file-system->spec): Keep the 'check?'
flag.
(qemu-initrd)[helper-packages]: New variable. Pass it as #:to-copy.
<gexp>: Add 'set-path-environment-variable' call. Remove #:unionfs
argument for 'boot-system'.
* gnu/system/vm.scm (%linux-vm-file-systems): Add 'check?' field/
(virtualized-operating-system): Likewise for the "9p" file system.
* guix/build/linux-initrd.scm (mount-root-file-system): Change #:unionfs
default. Call 'check-file-system' before mounting ROOT, when
VOLATILE-ROOT? is false.
(check-file-system): New procedure.
(mount-file-system): Honor 'check?' element in list; add
'check-file-system' call.
(boot-system): Remove #:root-fs-type and #:unionfs parameters.
[root-mount-point?, root-fs-type]: New variables.
Call 'mount-file-system' on all MOUNTS but "/".
Fixes a regression introduced in 83bcd0b.
* gnu/system/vm.scm (system-qemu-image): Override the 'file-systems'
field of OS. Add #:file-system-type parameter and honor it.
* gnu/system.scm (<operating-system>)[initrd]: Default to
'qemu-initrd'.
(<file-system>): New record type.
(operating-system-root-file-system): New procedure.
(operating-system-derivation): Take the device name for GRUB from
'operating-system-root-file-system'. Pass the
'operating-system-initrd' procedure the list of boot file systems.
* gnu/system/linux-initrd.scm (file-system->spec): New procedure.
(qemu-initrd): Add 'file-systems' parameter, and remove #:mounts
parameter.
[file-system-type-predicate]: New procedure.
[linux-modules]: Use it.
Adjust #:mounts argument in 'boot-system' call.
(gnu-system-initrd): Remove.
* gnu/system/vm.scm (%linux-vm-file-systems): New variable.
(expression->derivation-in-linux-vm): Adjust call to 'qemu-initrd'.
(virtualized-operating-system): New procedure.
(system-qemu-image/shared-store-script)[initrd]: Remove. Use
'virtualized-operating-system'. Get the 'initrd' file from OS-DRV.
* guix/build/linux-initrd.scm (mount-qemu-smb-share, mount-qemu-9p):
Remove.
(MS_RDONLY, MS_BIND): New global variables.
(bind-mount): Remove local 'MS_BIND' definition.
(mount-root-file-system): New procedure, with code formerly in
'boot-system'.
(mount-file-system): New procedure.
(boot-system): Add #:root-fs-type parameter. Remove 'MS_RDONLY' local
variable. Use 'mount-root-file-system' and 'mount-file-system'.
* doc/guix.texi (Using the Configuration System): Add 'file-system'
declaration.
* gnu/system.scm (<operating-system>)[groups]: Change default to just
the 'root' group.
[sudoers]: New field.
(etc-directory): Add #:sudoers parameter. Add 'sudoers' to the
file union.
(operating-system-etc-directory): Pass #:sudoers to 'etc-directory'.
(%setuid-programs): Add 'sudo'.
(%sudoers-specification): New variable.
* gnu/system/linux.scm (base-pam-services): Add 'sudo'.
* build-aux/hydra/demo-os.scm: Add 'groups' field; add 'guest' to the
'wheel' group.
* gnu/packages/maths.scm (petsc): New variable.
(petsc-complex): New variable.
* gnu/packages/patches/petsc-fix-threadcomm.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/system.scm (<operating-system>)[pam-services, setuid-programs]:
New fields.
(etc-directory)[bashrc]: Prepend /run/setuid-programs to $PATH.
(operating-system-etc-directory): Honor
'operating-system-pam-services'.
(%setuid-programs): New variable.
(operating-system-boot-script): Add (guix build utils) to the set of
imported modules. Call 'activate-setuid-programs' in boot script.
* gnu/system/linux.scm (base-pam-services): New procedure.
* guix/build/activation.scm (%setuid-directory): New variable.
(activate-setuid-programs): New procedure.
* build-aux/hydra/demo-os.scm: Add 'pam-services' field.
* gnu/system/linux-initrd.scm (expression->initrd): Rename 'inputs'
parameter to 'to-copy'. Remove 'files-to-copy'. Rewrite 'builder' as
a gexp, and use 'gexp->derivation'.
(qemu-initrd): Adjust accordingly.
* gnu/system.scm (file-union): Make 'name' the first parameter; remove
'inputs' parameter. Rewrite using 'gexp->derivation'.
(etc-directory): Adjust accordingly.
(operating-system-derivation): Ditto.
* gnu/services.scm (<service>)[inputs]: Remove.
* gnu/system.scm (links): Remove.
(etc-directory): Add PASSWD and SHADOW to #:inputs.
(operating-system-boot-script): Pass ETC to 'dmd-configuration-file'.
(operating-system-derivation): Remove EXTRAS from the union.
* gnu/system/linux.scm (pam-service->configuration): Rewrite in terms of
'gexp->derivation'. Compute the contents on the build side. Expect
'arguments' to contain a list of gexps.
(pam-services->directory): Rewrite in terms of 'gexp->derivation'.
(unix-pam-service): Change 'arguments' to a list of one gexp.
* gnu/system/shadow.scm (<user-account>)[inputs]: Remove.
[shell]: Change default value to a gexp.
(passwd-file): Rewrite in terms of 'gexp->derivation'. Compute
contents on the build side.
* gnu/services/base.scm (host-name-service, mingetty-service,
nscd-service, syslog-service, guix-service): Change 'start' and 'stop'
to gexps; remove 'inputs' field.
(guix-build-accounts): Change 'shell' field to a gexp.
* gnu/services/networking.scm (static-networking-service): Change
'start' and 'stop' to gexps; remove 'inputs' field.
* gnu/services/xorg.scm (slim-service): Likewise.
* gnu/services/dmd.scm (dmd-configuration-file): Expect ETC to be a
derivation. Change 'config' to a gexp. Use 'gexp->file' instead of
'text-file'.
* doc/guix.texi (Defining Services): Update nscd example with gexps, and
without 'inputs'. Add xref to "G-Expressions".
* gnu/system.scm (operating-system-boot-script): Use 'gexp->file'
instead of 'text-file*'.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Likewise.
(system-qemu-image/shared-store-script)[builder]: Turn into a gexp.
Use 'gexp->derivation' instead of 'derivation-expression'.
* gnu/packages/rdf.scm (soprano): Add input clucene and patch the cmake
file looking for it.
* gnu/packages/patches/soprano-find-clucene.patch: New file.
* gnu-system.am (dist_patch_DATA): Register the patch.
definitions accordingly.
* guix/build/cmake-build-system.scm (configure): Add flags.
* gnu/packages/maths.scm (lapack): Drop special code.
* gnu/packages/ssh.scm (libssh): Drop special code.
* gnu/packages/slim.scm (slim): Drop special code and enable shared library.
Co-authored-by: Eric Bavier <bavier@member.fsf.org>
and make input qjson native.
* gnu/packages/kde.scm (libdbusmenu-qt): Add native input doxygen for
building the documentation.
Make input qjson native, as it is needed only for the tests.
* gnu/packages/doxygen.scm: New file.
* gnu/packages/patches/doxygen-test.patch,
gnu/packages/patches/doxygen-tmake.patch: New files.
* gnu-system.am (GNU_SYSTEM_MODULES, dist_patch_DATA): Register the new files.
* gnu/system/vm.scm (system-qemu-image/shared-store-script): Move
'initrd' definition to the top-level. Have a single definition of
'initrd', 'image', and 'os-drv'.
* gnu/system.scm (operating-system-boot-script): New procedure.
(operating-system-derivation): Use it. Remove DMD-CONF from the
file union. Add BOOT-DRV to the inputs.
* gnu/packages/multiprecision.scm (gmp): Upgrade to 6.0.0a.
* gnu/packages/base.scm (gcc-boot0): Modify symbolic link to point to
gmp-6.0.0 instead of the non-existing gmp-6.0.0a.
* guix/build/linux-initrd.scm (make-essential-device-nodes): Make
/dev/fuse.
(boot-system): Add #:unionfs parameter. Invoke UNIONFS instead of
copying files over when VOLATILE-ROOT? is true.
* gnu/system/linux-initrd.scm (expression->initrd): Add #:inputs
parameter.
[files-to-copy]: New procedure.
[builder]: Add 'to-copy' parameter; honor it.
(qemu-initrd)[linux-modules]: Add 'fuse.ko' when VOLATILE-ROOT?.
Pass UNIONFS-FUSE/STATIC as #:inputs; change builder to pass #:unionfs
to 'boot-system'.
* gnu/system/vm.scm (input->name+output): New procedure.
(expression->derivation-in-linux-vm): Use it for 'input-alist'.
(qemu-image)[input->name+derivation]: Remove. Use
'input->name+output' instead.
* gnu/system/vm.scm (system-qemu-image/shared-store-script): Change
#:qemu to default to QEMU. Change INITRD to use a 9p mount for the
store. Change command-line to use -virtfs.
John Darrington