97507ebedc
derivations: 'derivation' sorts items in the resulting object.
...
* guix/derivations.scm (derivation-input<?): New procedure.
(write-derivation)[coalesce-duplicate-inputs]: Remove.
Remove calls to 'sort'.
(coalesce-duplicate-inputs): New procedure.
(derivation-hash): Sort INPUTS and use 'coalesce-duplicate-inputs'.
(derivation)[input->derivation-input]
[coalesce-duplicate-inputs]: New procedures.
Sort OUTPUTS, INPUTS, and ENV-VARS.
* tests/derivations.scm ("read-derivation vs. derivation"): New test.
2016-05-21 01:35:14 +02:00
3cabdead6f
graph: Use absolute file name canonicalization.
...
* guix/scripts/graph.scm (guix-graph): Wrap in 'with-fluids'.
2016-05-21 01:35:14 +02:00
3c9a7185e4
gnu: linux-libre: Update to 4.5.5.
...
* gnu/packages/linux.scm (linux-libre): Update to 4.5.5.
2016-05-20 18:58:15 -04:00
4483a1185d
gnu: linux-libre-4.4: Update to 4.4.11.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11.
2016-05-20 18:58:06 -04:00
932f2b70a6
ant-build-system: Add unpack phase.
...
* guix/build/ant-build-system.scm (unpack): New procedure.
(%standard-phases): Use it.
2016-05-20 15:24:32 +02:00
987a118334
gnu: Add default gcc-objc++.
...
* gnu/packages/gcc.scm (gcc-objc++): New variable.
2016-05-20 15:19:48 +02:00
a5948c0d41
gnu: Add gcc-objc++-4.9.
...
* gnu/packages/gcc.scm (gcc-objc++-4.9): New variable.
2016-05-20 15:19:48 +02:00
8b196ad208
gnu: Add default gcc-objc.
...
* gnu/packages/gcc.scm (gcc-objc): New variable.
2016-05-20 15:19:48 +02:00
2d69c1616d
gnu: Add gcc-objc-4.9.
...
* gnu/packages/gcc.scm (gcc-objc-4.9): New variable.
2016-05-20 15:19:33 +02:00
813efdded1
gnu: r-rcpparmadillo: Update to 0.6.700.6.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.
2016-05-20 15:18:23 +02:00
945eef85c5
gnu: armadillo: Update to 6.700.7.
...
* gnu/packages/maths.scm (armadillo): Update to 6.700.7.
2016-05-20 15:18:23 +02:00
7740f58128
gnu: r-genomation: Update to 1.4.2.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
2016-05-20 15:18:23 +02:00
f6225d135c
gnu: r-jsonlite: Update to 0.9.20.
...
* gnu/packages/web.scm (r-jsonlite): Update to 0.9.20.
2016-05-20 15:18:23 +02:00
c969453e1c
gnu: r-plotly: Update to 3.6.0.
...
* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.
2016-05-20 15:18:23 +02:00
95513f284f
gnu: r-matrixstats: Update to 0.50.2.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.
2016-05-20 15:18:23 +02:00
b8f6a97ebd
gnu: r-r-rsp: Update to 0.30.0.
...
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.
2016-05-20 15:18:23 +02:00
f0c56a2411
gnu: r-rmarkdown: Update to 0.9.6.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.
2016-05-20 15:18:23 +02:00
2f7ac060ff
gnu: r-plotrix: Update to 3.6-2.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.
2016-05-20 15:18:23 +02:00
133f27b06a
gnu: r-devtools: Update to 1.11.1.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.
2016-05-20 15:18:23 +02:00
3624ad7150
gnu: r-git2r: Update to 0.15.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0.
2016-05-20 15:18:23 +02:00
c1e2c9d41a
gnu: r-openssl: Update to 0.9.3.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3.
2016-05-20 15:18:23 +02:00
383f6337a0
gnu: r-testthat: Update to 1.0.2.
...
* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2.
2016-05-20 15:18:23 +02:00
1b206aeb00
gnu: r-knitr: Update to 1.13.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.13.
2016-05-20 15:18:23 +02:00
d5130e6345
gnu: r-highr: Update to 0.6.
...
* gnu/packages/statistics.scm (r-highr): Update to 0.6.
2016-05-20 15:18:23 +02:00
df25b0048a
gnu: r-formatr: Update to 1.4.
...
* gnu/packages/statistics.scm (r-formatr): Update to 1.4.
2016-05-20 15:18:23 +02:00
84e5368719
gnu: r-evaluate: Update to 0.9.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.9.
2016-05-20 15:18:23 +02:00
9a0ccf43cc
gnu: r-bh: Update to 1.60.0-2.
...
* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2.
2016-05-20 15:18:23 +02:00
a76b3f6914
gnu: r-dbi: Update to 0.4-1.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.4-1.
2016-05-20 15:18:23 +02:00
eb1a5b65c0
gnu: r-rcpp: Update to 0.12.5.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5.
2016-05-20 15:18:23 +02:00
8ede249e0a
gnu: r-genomicfeatures: Update to 1.24.2.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2.
2016-05-20 15:18:23 +02:00
192e1ea8d1
gnu: r-summarizedexperiment: Update to 1.2.2.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2.
2016-05-20 15:18:23 +02:00
d7420566a9
gnu: r-biocparallel: Update to 1.6.2.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2.
2016-05-20 15:18:23 +02:00
73af676feb
gnu: r-annotationdbi: Update to 1.34.2.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2.
2016-05-20 15:18:23 +02:00
679e670b36
gnu: r-variantannotation: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.1.
2016-05-20 15:18:23 +02:00
186ed87337
gnu: r-genomeinfodb: Update to 1.8.1.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.1.
2016-05-20 15:18:23 +02:00
0fc4a8afba
gnu: btrfs-progs: Update to 4.5.3.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.5.3.
2016-05-19 21:04:22 -04:00
0e40755d35
gnu: jemalloc: Update to 4.2.0.
...
* gnu/packages/jemalloc.scm (jemalloc): Update to 4.2.0.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-05-19 20:43:13 +03:00
119b83989d
gnu: expat: Fix CVE-2016-0718. Improve fix for CVE-2015-1283.
...
* gnu/packages/patches/expat-CVE-2015-1283-refix.patch,
gnu/packages/patches/expat-CVE-2016-0718.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
[source]: Use new patches.
2016-05-19 10:27:18 -04:00
9684e30b9b
gnu: flann: Do not install .a files.
...
* gnu/packages/maths.scm (flann)[arguments]: Add #:phases.
2016-05-19 14:51:21 +02:00
458480235b
gnu: python: Add 'python' variables for different major/minor versions.
...
* gnu/packages/python.scm (python-2): Rename variable to...
(python-2.7): ...this.
(python-2): Refer to "python-2.7".
(python): Rename variable to...
(python-3.4): ...this.
(python-3): Refer to "python-3.4".
(python): Refer to "python-3".
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-05-19 14:51:21 +02:00
39b3033731
gnu: flann: Strip .mex file.
...
* gnu/packages/maths.scm (flann)[arguments]: Add #:strip-directories.
2016-05-19 14:51:21 +02:00
0947698c42
gnu: Add r-biased-urn.
...
* gnu/packages/statistics.scm (r-biased-urn): New variable.
2016-05-19 22:13:43 +10:00
44c5f0258d
gnu: giflib: Use 'modify-phases'.
...
* gnu/packages/image.scm (giflib)[arguments]: Use 'modify-phases'.
2016-05-19 13:06:49 +03:00
3fdb2a84be
gnu: giflib: Update to 5.1.4 [fixes CVE-2015-7555, CVE-2016-3977].
...
* gnu/packages/image.scm (giflib): Update to 5.1.4.
2016-05-19 13:01:55 +03:00
5c447e280e
gnu: Add emacs-smartparens.
...
* gnu/packages/emacs.scm (emacs-smartparens): New variable.
Signed-off-by: Alex Kost <alezost@gmail.com>
2016-05-19 11:45:15 +03:00
21f05134fc
Update name for Kei Kebreau.
...
* .mailmap: Add Kei Kebreau.
* gnu/local.mk: Replace "Kei Yamashita" with "Kei Kebreau".
* gnu/packages/calendar.scm: Likewise.
* gnu/packages/dillo.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/game-development.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
Signed-off-by: Alex Kost <alezost@gmail.com>
2016-05-19 11:42:03 +03:00
b7b27a8f28
gnu: octave: Update to 4.0.2.
...
* gnu/packages/maths.scm (octave): Update to 4.0.2.
[inputs]: Added cyrus-sasl, openssl.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-05-19 04:32:23 +03:00
91231156ce
gnu: Add ntfs-3g.
...
* gnu/packages/linux.scm (ntfs-3g): New variable.
2016-05-18 23:41:03 +02:00
64851f4a23
gnu: wmbattery: Fix UPower-related memory leak.
...
* gnu/packages/gnustep.scm (wmbattery)[source](snippet): New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-05-18 23:41:03 +02:00
65e46ca0ed
gnu: qtkeychain: Update to 0.6.2.
...
* gnu/packages/qt.scm (qtkeychain): Update to 0.6.2.
2016-05-18 18:06:47 +03:00
Ludovic Courtès