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Author SHA1 Message Date
David Craven d8e0a08c26
gnu: Use 'license:' prefix in (gnu packages ocaml). 
* gnu/packages/ocaml.scm (ocaml, opam, camlp4, camlp5, hevea, coq,
  proof-general, ocaml-menhir, lablgtk, unison, ocaml-findlib)[license]:
  Add prefix.
 2017-01-04 14:07:56 +01:00
David Craven 3254e1aba9
gnu: Add idris-lens. 
* gnu/packages/idris.scm (idris-lens): New variable.
 2017-01-04 12:11:14 +01:00
David Craven 5a16d828b3
gnu: Add idris-bifunctors. 
* gnu/packages/idris.scm (idris-bifunctors): New variable.
 2017-01-04 12:11:14 +01:00
David Craven 4e17fff386
gnu: Add idris-wl-pprint. 
* gnu/packages/idris.scm (idris-wl-pprint): New variable.
 2017-01-04 12:11:14 +01:00
David Craven ea3b38f1e1
gnu: Add idris-lightyear. 
* gnu/packages/idris.scm (idris-lightyear, idris-default-arguments):
  New variables.
 2017-01-04 12:11:14 +01:00
David Craven ae482ce12d
gnu: idris: Move to (gnu packages idris). 
* gnu/packages/haskell.scm: Move 'idris' to...
* gnu/packages/idris.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add idris.scm.
 2017-01-04 11:51:36 +01:00
David Craven c7a7129c5a
gnu: idris: Update to 0.99. 
* gnu/packages/haskell.scm (idris): Update to 0.99.
 2017-01-04 11:44:07 +01:00
David Craven c0d5b6452b
gnu: Order module imports in (gnu packages haskell) alphabetically. 
* gnu/packages/haskell.scm: Order module imports alphabetically.
 2017-01-04 11:44:07 +01:00
Ricardo Wurmus de793e9a5a
gnu: ghc-language-c: Fix up. 
* gnu/packages/haskell.scm (ghc-language-c): Fix up indentation and
description.
 2017-01-04 11:41:43 +01:00
David Craven 3b7ccbe94c
build-system: cargo: Use correct cargo. 
* gnu/packages/rust.scm (cargo-bootstrap): Make private.
* guix/build-system/cargo.scm (default-cargo): Use cargo.
 2017-01-04 11:29:15 +01:00
David Craven b5a09649db
gnu: Add cargo. 
* gnu/packages/rust.scm (cargo): New variable.
 2017-01-04 11:29:14 +01:00
Danny Milosavljevic 2d2388e243
gnu: Add ghc-language-c. 
* gnu/packages/haskell.scm (ghc-language-c): New variable.
 2017-01-04 11:27:24 +01:00
Leo Famulari 324f4fc559
gnu: mcrypt: Fix patches for CVE-2012-{4409,4527}. 
This fixes CVE-2012-{4409,4527}.

This is a followup to commit fd1461879c.

* gnu/packages/patches/mcrypt-CVE-2012-4409.patch,
gnu/packages/patches/mcrypt-CVE-2012-4527.patch: Apply the patches to the mcrypt
source code.
 2017-01-04 02:46:51 -05:00
Alex Griffin 37e8a2e219
gnu: calibre: Update to 2.76.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.76.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-04 00:00:34 -05:00
Alex Griffin f7e9f1cadc
gnu: feh: Update to 2.18. 
* gnu/packages/image-viewers.scm (feh): Update to 2.18.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:22 -05:00
Alex Griffin eb5378f902
gnu: bs1770gain: Update to 0.4.12. 
* gnu/packages/audio.scm (bs1770gain): Update to 0.4.12.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:22 -05:00
Alex Griffin 648733dc14
gnu: dwm: Update to 6.1. 
* gnu/packages/suckless.scm (dwm): Update to 6.1.
[inputs]: Add libxft and freetype.
[arguments]: Set FREETYPEINC in #:make-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:22 -05:00
Alex Griffin bc47382a5d
gnu: dmenu: Update to 4.6. 
* gnu/packages/suckless.scm (dmenu): Update to 4.6.
[inputs]: Add libxft and freetype.
[arguments]: Set FREETYPEINC in #:make-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:21 -05:00
Alex Griffin f3a53f3c8f
gnu: slock: Update to 1.4. 
* gnu/packages/suckless.scm (slock): Update to 1.4.
[source] Remove CVE-2016-6866 patch (no longer needed).
* gnu/packages/patches/slock-CVE-2016-6866.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:21 -05:00
Alex Griffin 8efd807f95
gnu: trash-cli: Update to 0.17.1.1. 
* gnu/packages/shellutils.scm (trash-cli): Update to 0.17.1.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:21 -05:00
Tobias Geerinckx-Rice 3b40213923
gnu: Add wimlib. 
* gnu/packages/backup.scm (wimlib): New variable.
 2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 835d371f4b
gnu: parallel: Update to 20161222. 
* gnu/packages/parallel.scm (parallel): Update to 20161222.
 2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 0b2a91d8b7
gnu: global: Update to 6.5.6. 
* gnu/packages/code.scm (global): Update to 6.5.6.
 2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 02dadd3827
gnu: nano: Update to 2.7.3. 
* gnu/packages/nano.scm (nano): Update to 2.7.3.
 2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 3b3b60d037
gnu: Use HTTPS for all sourceforge.net home pages. 
* gnu/packages/admin.scm (mingetty, clusterssh)[home-page]: Use HTTPS.
* gnu/packages/audio.scm (libbs2b, soxr)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (bless)[home-page]: Likewise.
* gnu/packages/display-managers.scm (slim)[home-page]: Likewise.
* gnu/packages/games.scm (extremetuxracer)[home-page]: Likewise.
* gnu/packages/ghostscript.scm (gs-fonts)[home-page]: Likewise.
* gnu/packages/haskell.scm (ghc-regex-base, ghc-regex-posix,
ghc-regex-compat)[home-page]: Likewise.
* gnu/packages/image.scm (imlib2)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (librevenge, libcmis, libodfgen, libmwaw)
[home-page]: Likewise.
* gnu/packages/linux.scm (hdparm, acpid, libavc1394, rng-tools)
[home-page]: Likewise.
* gnu/packages/mail.scm (esmtp)[home-page]: Likewise.
* gnu/packages/mp3.scm (ripperx)[home-page]: Likewise.
* gnu/packages/onc-rpc.scm (libtirpc)[home-page]: Likewise.
* gnu/packages/perl.scm (perl-czplib)[home-page]: Likewise.
* gnu/packages/python.scm (python-pyasn1-modules)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (xosd)[home-page]: Likewise.
 2017-01-04 05:14:22 +01:00
Christopher Baines 0916dc526e
gnu: Add emacs-git-gutter 
* gnu/packages/emacs.scm (emacs-git-gutter): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 22:46:55 -05:00
Kei Kebreau ea5cc29561
gnu: supertux: Update to 0.5.1. 
* gnu/packages/games.scm (supertux): Update to 0.5.1.
 2017-01-03 18:07:45 -05:00
Leo Famulari f339f2773d
gnu: assword: Update to 0.10. 
* gnu/packages/password-utils.scm (assword): Update to 0.10.
[arguments]: Use Python 3 instead of Python 2.
[inputs]: Use Python 3 variants of inputs. Replace python2-pygpgme with
python-gpg. Remove python2-pygtk. Add python-pygobject.
[native-inputs]: Replace help2man with txt2man.
[arguments]: Remove PYTHONPATH from 'Makefile' in the 'manpage' phase.
 2017-01-03 12:35:45 -05:00
Leo Famulari 7637de2313
gnu: Add python-xdo. 
* gnu/packages/python.scm (python-xdo): New variable.
(python2-xdo): Use package-with-python2.
 2017-01-03 12:35:44 -05:00
Leo Famulari e871c332a0
gnu: python2-xdo: Update to 0.3. 
* gnu/packages/python.scm (python2-xdo): Update to 0.3.
 2017-01-03 12:35:44 -05:00
Leo Famulari e3dd1f0cb8
gnu: Add python-gpg. 
* gnu/packages/gnupg.scm (python-gpg, python2-gpg): New variable.
 2017-01-03 12:35:44 -05:00
Leo Famulari 9e0f16f23f
gnu: gpgme: Update to 1.8.0. 
* gnu/packages/gnupg.scm (gpgme): Update to 1.8.0.
[arguments]: Don't set 'GPG=gpg2' in #:configure-flags. GnuPG-2.x is
installed as 'gpg' on Guix.
 2017-01-03 12:35:44 -05:00
Ludovic Courtès 4d0a3d8e9f
system: grub: Load relevant EFI modules on EFI systems. 
* gnu/system/grub.scm (eye-candy)[setup-gfxterm-body]: Add 'insmod'
invocations when ${grub_platform} is "efi".
 2017-01-03 18:16:01 +01:00
Ludovic Courtès 70c6341110
gnu: Add Zile-on-Guile. 
* gnu/packages/zile.scm (zile-on-guile): New variable.
 2017-01-03 18:16:01 +01:00
Marius Bakke e2c3037427
gnu: pcsc-lite: Update to 1.8.20 [fixes CVE-2016-10109]. 
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.20.
 2017-01-03 17:15:04 +01:00
Manolis Ragkousis 367f701379
gnu: glibc-hurd: Disable werror. 
* gnu/packages/base.scm (glibc/hurd)[arguments]: Add "--disable-werror".
 2017-01-03 16:00:43 +02:00
Manolis Ragkousis 62596a158b
gnu: Use hurd-triplet? to check if GNU/Hurd. 
* gnu/packages/make-bootstrap.scm (hurd-triplet?): Move it from here..
* gnu/packages/hurd.scm: ..to here. New exported procedure.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)
  [arguments]: Replace string-match.
  [inputs]: Same.
* gnu/packages/cross-base.scm (cross-libc)[native-inputs]: Same.
 2017-01-03 16:00:39 +02:00
Kei Kebreau 6a37872cd2
gnu: chicken: Fix CVE-2016-{6830,6831}. 
* gnu/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
 2017-01-03 08:35:02 -05:00
Kei Kebreau b9b6db45e8
gnu: chicken: Update to 4.11.1. 
* gnu/packages/scheme.scm (chicken): Update to 4.11.1.
 2017-01-03 08:34:54 -05:00
Julien Lepiller d338237d8c
services: nginx: Make service extensible. 
* gnu/services/web.scm (<nginx-configuration>)[server-blocks]: New
field.
(nginx-activation): When CONFIG-FILE is #f, use 'default-nginx-config'.
(nginx-shepherd-service): Likewise.
(nginx-service-type): Add 'compose' and 'extend' fields.
(nginx-service): Change default value of #:server-list to '(), and
default value of #:config-file to #f.
* doc/guix.texi (Web Services): Document it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-03 14:30:44 +01:00
Julien Lepiller 4e9ae301ce
services: nginx: Fix multiple index and server name. 
* gnu/services/web.scm (config-domain-strings, config-index-string): separate
names with a space.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-03 14:30:44 +01:00
Julien Lepiller 3b9b12ef49
services: nginx: Rename "vhost" to "server". 
* gnu/services/web.scm (<nginx-vhost-configuration>): Rename to...
(<nginx-server-configuration>): ... this.
* doc/guix.texi (Web Services): Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-03 14:30:44 +01:00
Roel Janssen 7b030c9f9b
gnu: r-plotrix: Update to 3.6-4. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-4.
 2017-01-03 13:51:05 +01:00
Roel Janssen 0c74399d98
gnu: r-git2r: Update to 0.18.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.18.0.
 2017-01-03 13:49:18 +01:00
Roel Janssen 807db78fc9
gnu: r-hmisc: Update to 4.0-2. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-2.
  [propagated-inputs]: Add r-base64enc.
 2017-01-03 13:46:14 +01:00
Roel Janssen 437d064dc5
gnu: r-openssl: Update to 0.9.6. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.6.
 2017-01-03 13:39:51 +01:00
Roel Janssen 596fcfac88
gnu: r-jsonlite: Update to 1.2. 
* gnu/packages/web.scm (r-jsonlite): Update to 1.2.
 2017-01-03 13:37:55 +01:00
Roel Janssen da13738ef0
gnu: r-ggplot2: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.1.
 2017-01-03 13:34:53 +01:00
Roel Janssen 407a280103
gnu: r-genomicranges: Update to 1.26.2. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.2.
 2017-01-03 13:28:35 +01:00
Roel Janssen ac370a3397
gnu: r-genomeinfodb: Update to 1.10.2. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.2.
 2017-01-03 12:47:36 +01:00
Efraim Flashner 4fb14fad94
gnu: sudo: Update to 1.8.19p1. 
* gnu/packages/admin.scm (sudo): Update to 1.8.19p1.
 2017-01-03 10:12:27 +02:00
Brandon Ludwig b1251a2f96
gnu: arc-theme: Update to 20161119. 
* gnu/packages/gnome.scm (arc-theme): Update to 20161119.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 00:29:42 -05:00
Maxim Cournoyer 6155186838
gnu: gimp: Enable PDF support 
* gnu/packages/gimp.scm (gimp)[inputs]: Add poppler.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 00:18:51 -05:00
Leo Famulari 47932c0d44
gnu: lynx: Update to 2.8.9dev.11 [fixes CVE-2016-9179]. 
* gnu/packages/lynx.scm (lynx): Update to 2.8.9dev.11.
 2017-01-02 23:52:12 -05:00
Leo Famulari b3e2ea8d48
gnu: Add sonic. 
* gnu/packages/speech.scm (sonic): New variable.
 2017-01-02 18:03:10 -05:00
Mathieu OTHACEHE 5819431c59
gnu: Add cmst. 
* gnu/packages/connman.scm (cmst): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-02 22:55:33 +01:00
Mathieu OTHACEHE 125e3cdece
gnu: connman: Add dependency on polkit. 
* gnu/packages/connman.scm (connman)[arguments]: Add "--enable-polkit".
[inputs]: Add POLKIT.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-02 22:55:33 +01:00
Efraim Flashner 832d60dc01
gnu: mpv: Update to 0.23.0. 
* gnu/packages/video.scm (mpv): Update to 0.23.0.
 2017-01-02 21:48:49 +02:00
Efraim Flashner 8d2de491e5
gnu: openvpn: Update to 2.3.14. 
* gnu/packages/vpn.scm (openvpn): Update to 2.3.14.
 2017-01-02 21:48:48 +02:00
Efraim Flashner 68b3627cd6
gnu: ffmpeg@2.8: Update to 2.8.10. 
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.10.
 2017-01-02 21:48:48 +02:00
Efraim Flashner 4b50daab00
gnu: jasper: Update to 2.0.10. 
* gnu/packages/image.scm (jasper): Update to 2.0.10.
 2017-01-02 21:48:38 +02:00
Ludovic Courtès 1a49a10a94
gnu: fftw: Factorize creation of the --enable-threads variant. 
* gnu/packages/algebra.scm (pthread-variant): New procedure.
(fftw-with-threads, fftwf-with-threads): Use it.
 2017-01-02 14:54:24 +01:00
Ludovic Courtès 7355634db3
gnu: Disambiguate packages with the same name. 
* gnu/packages/algebra.scm (fftw-with-threads, fftwf-with-threads): Add
'name' field.
* gnu/packages/llvm.scm (llvm-for-extempore): Likewise.
 2017-01-02 14:54:24 +01:00
Ludovic Courtès 9af076245f
gnu: gfortran: Remove non-'eq?' duplicate of gfortran@4.9. 
* gnu/packages/gcc.scm (gfortran): Turn into an alias for GFORTRAN-4.9.
 2017-01-02 14:54:24 +01:00
Tobias Geerinckx-Rice 1b5ea0922f
gnu: python-s3transfer: Update to 0.1.10. 
* gnu/packages/python.scm (python-s3transfer): Update to 0.1.10.
 2017-01-02 08:37:26 +01:00
Tobias Geerinckx-Rice 1f89fb1691
gnu: python-greenlet: Update to 0.4.11. 
* gnu/packages/python.scm (python-greenlet): Update to 0.4.11.
 2017-01-02 08:37:25 +01:00
Tobias Geerinckx-Rice 3753f2e6e9
gnu: python-mako: Update to 1.0.6. 
* gnu/packages/python.scm (python-mako): Update to 1.0.6.
 2017-01-02 08:37:25 +01:00
Tobias Geerinckx-Rice af27e845e1
gnu: awscli: Update to 1.11.35. 
* gnu/packages/python.scm (awscli): Update to 1.11.35.
 2017-01-02 08:37:24 +01:00
Tobias Geerinckx-Rice bbb99d6b37
gnu: python-werkzeug: Update to 0.11.15. 
* gnu/packages/python.scm (python-werkzeug): Update to 0.11.15.
 2017-01-02 08:37:23 +01:00
Tobias Geerinckx-Rice 27f9148e1d
gnu: python-backports-abc: Update to 0.5. 
* gnu/packages/python.scm (python-backports-abc): Update to 0.5.
 2017-01-02 08:37:23 +01:00
Tobias Geerinckx-Rice d79fa7da1b
gnu: python-decorator: Update to 4.0.10. 
* gnu/packages/python.scm (python-decorator): Update to 4.0.10.
 2017-01-02 08:37:22 +01:00
Tobias Geerinckx-Rice 819939cb94
gnu: python-pycparser: Use ‘modify-phases’ syntax. 
* gnu/packages/python.scm (python-pycparser)[arguments]: Use
‘modify-phases’.
 2017-01-02 08:37:21 +01:00
Tobias Geerinckx-Rice 5043b20dcd
gnu: python-pycparser: Update to 2.17. 
* gnu/packages/python.scm (python-pycparser): Update to 2.17.
 2017-01-02 08:28:28 +01:00
Leo Famulari 0d48ff811f
gnu: beets: Build with Python 3. 
* gnu/packages/music.scm (beets)[arguments]: Build with python@3.
(native-inputs): Use Python-2 variants of all inputs.
(inputs): Use Python-2 variants of all inputs. Remove python-pyechonest.
 2017-01-01 21:06:32 -05:00
Leo Famulari 27ccefc3d2
gnu: beets: Update to 1.4.2. 
* gnu/packages/music.scm (beets): Update to 1.4.2.
 2017-01-01 21:06:24 -05:00
Leo Famulari 2e161eafd8
gnu: python-pyicu: Update to 1.9.5. 
* gnu/packages/python.scm (python-pyicu, python2-pyicu): Update to 1.9.5.
[source]: Use pypi-uri.
 2017-01-01 20:15:06 -05:00
Theodoros Foradis 9a93f57473
gnu: yosys: Update to 0.7. 
* gnu/packages/fpga.scm (yosys): Update to 0.7.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 20:06:43 -05:00
Theodoros Foradis f90f6b683e
gnu: yosys: Add xdot functionality. 
* gnu/packages/fpga.scm (yosys)[inputs]: Add xdot, graphviz and psmisc.
[arguments]: Add 'fix-paths' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 20:06:43 -05:00
Theodoros Foradis abdd28e8c1
gnu: Add xdot. 
* gnu/packages/graphviz.scm (xdot): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 20:06:43 -05:00
Ludovic Courtès 231eddc88a
services: cuirass: Remove 'cuirass-service' procedure. 
* gnu/services/cuirass.scm (<cuirass-configuration>)[specifications]:
Remove default value.
(cuirass-service): Remove.
* doc/guix.texi (Continuous Integration): Adjust accordingly.
 2017-01-01 23:30:31 +01:00
Ludovic Courtès 8de938d59a
services: cuirass: Allow for gexps in specifications. 
* gnu/services/cuirass.scm (<cuirass-configuration>)[specifications]:
Change default value to #~'().
(cuirass-shepherd-service): Remove conditional for "--specifications".
Use 'scheme-file' instead of 'plain-file'.  Change file name to
"cuirass-specs.scm".
* doc/guix.texi (Continuous Integration): Change the example to use a
gexp where #:file refers to a file within Cuirass.  Adjust
documentation.
 2017-01-01 23:30:30 +01:00
Leo Famulari 7be13d0006
gnu: python-ndg-httpsclient: Use pypi-uri. 
* gnu/packages/python.scm (python-ndg-httpsclient, python2-ndg-httpsclient)
[source]: Use pypi-uri.
 2017-01-01 17:01:32 -05:00
Ricardo Wurmus 5dbeccf5b4
gnu: diffoscope: Embed tool references. 
Fixes <http://bugs.gnu.org/25315>.

* gnu/packages/package-management.scm (diffoscope)[inputs]: Add
colordiff and vim.
[arguments]: Add "embed-tool-references" build phase to embed references
to "colordiff", "xxd", and "readelf".
 2017-01-01 21:53:50 +01:00
Alex Vong ed88dd4512
gnu: mariadb: Update to 10.1.20. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.20.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 14:51:04 -05:00
Alex Vong e63b19f509
gnu: mysql: Update to 5.7.17. 
* gnu/packages/databases.scm (mysql): Update to 5.7.17.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 14:45:23 -05:00
Ricardo Wurmus 395bbfdbea
gnu: Add propeller-development-suite. 
* gnu/packages/embedded.scm (propeller-development-suite): New variable.
 2017-01-01 13:56:28 +01:00
Ricardo Wurmus 3ebc86d9bd
gnu: Add spinsim. 
* gnu/packages/embedded.scm (spinsim): New variable.
 2017-01-01 13:56:28 +01:00
Ricardo Wurmus 0a7860c438
gnu: Add spin2cpp. 
* gnu/packages/embedded.scm (spin2cpp): New variable.
 2017-01-01 13:56:28 +01:00
Ricardo Wurmus c6b96af794
gnu: Add propeller-load. 
* gnu/packages/embedded.scm (propeller-load): New variable.
 2017-01-01 13:56:28 +01:00
Ricardo Wurmus 150e0a1ec6
gnu: Add openspin. 
* gnu/packages/embedded.scm (openspin): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus eb88fbafcd
gnu: Add propeller-toolchain. 
* gnu/packages/embedded.scm (propeller-toolchain): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus 0d0079b2c5
gnu: Add proplib. 
* gnu/packages/embedded.scm (proplib): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus 68cb27840e
gnu: Add propeller-gcc. 
* gnu/packages/embedded.scm (propeller-gcc): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus 2d7c92134e
gnu: Add propeller-binutils. 
* gnu/packages/embedded.scm (propeller-binutils): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus 6f5b1c9107
gnu: Add dummy linker for propeller-elf. 
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for
propeller-elf.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus c26ba570cc
gnu: clisp: Remove timestamps. 
* gnu/packages/lisp.scm (clisp)[arguments]: Add "remove-timestamps"
phase to remove "__DATE__" and "__TIME__".
 2017-01-01 13:55:50 +01:00
Ricardo Wurmus 636c77d066
gnu: clisp: Use modify-phases syntax. 
* gnu/packages/lisp.scm (clisp)[arguments]: Use modify-phases syntax.
 2017-01-01 13:55:50 +01:00
Alex Kost c50dc711a1
gnu: manaplus: Update to 1.6.12.24. 
* gnu/packages/games.scm (manaplus): Update to 1.6.12.24.
 2017-01-01 11:47:08 +03:00
Ben Woodcroft 25d84d3122
gnu: python-dendropy: Update to 4.2.0. 
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0.
[source]: Remove patch.
(python2-dendropy)[source]: Use the same source as python-dendropy.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-01-01 16:47:47 +10:00
Ben Woodcroft 322a583fcf
gnu: diamond: Update to 0.8.31. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.31.
 2017-01-01 16:47:47 +10:00
Ludovic Courtès 7fc2d377d1
gnu: nagios: Update to 4.2.4 [fixes CVE-2016-{9565,9566}]. 
* gnu/packages/monitoring.scm (nagios): Update to 4.2.4.
[native-inputs]: New field.
 2016-12-31 20:02:59 +01:00
Tobias Geerinckx-Rice b13a5b4d16
gnu: python-graphql-relay: Update to 0.4.5. 
* gnu/packages/python.scm (python-graphql-relay): Update to 0.4.5.
 2016-12-31 16:51:56 +01:00
Tobias Geerinckx-Rice 0c315fb394
gnu: python-freezegun: Update to 0.3.8. 
* gnu/packages/python.scm (python-freezegun): Update to 0.3.8.
 2016-12-31 16:51:56 +01:00
Tobias Geerinckx-Rice 234ade2d7b
gnu: python-ply: Update to 3.9. 
* gnu/packages/python.scm (python-ply): Update to 3.9.
[source]: Use pypi-uri.
 2016-12-31 16:51:55 +01:00
Tobias Geerinckx-Rice ab0c342924
gnu: python-pyquery: Update to 1.2.17. 
* gnu/packages/python.scm (python-pyquery): Update to 1.2.17.
 2016-12-31 16:51:55 +01:00
Tobias Geerinckx-Rice 42734b9a88
gnu: python-click-log: Update to 0.1.8. 
* gnu/packages/python.scm (python-click-log): Update to 0.1.8.
 2016-12-31 16:51:54 +01:00
Tobias Geerinckx-Rice ae476d01da
gnu: python-ndg-httpsclient: Update to 0.4.2. 
* gnu/packages/python.scm (python-ndg-httpsclient): Update to 0.4.2.
 2016-12-31 16:51:54 +01:00
Tobias Geerinckx-Rice f165648e1b
gnu: python-ipykernel: Update to 4.5.2. 
* gnu/packages/python.scm (python-ipykernel): Update to 4.5.2.
 2016-12-31 16:51:53 +01:00
Tobias Geerinckx-Rice 45cc957c72
gnu: python-jupyter-core: Update to 4.2.1. 
* gnu/packages/python.scm (python-jupyter-core): Update to 4.2.1.
 2016-12-31 16:51:53 +01:00
Tobias Geerinckx-Rice 594358f5b6
gnu: python2-fastlmm: Update to 0.2.26. 
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.26.
 2016-12-31 16:51:40 +01:00
Tobias Geerinckx-Rice a5f92ca04f
gnu: python-pytz: Update to 2016.10. 
* gnu/packages/python.scm (python-pytz): Update to 2016.10.
 2016-12-31 16:36:20 +01:00
Tobias Geerinckx-Rice bf5e4bc42a
gnu: python-pyyaml: Update to 3.12. 
* gnu/packages/python.scm (python-pyyaml): Update to 3.12.
[source]: Use pypi-uri.
 2016-12-31 15:27:24 +01:00
Tobias Geerinckx-Rice 7d2e758df5
gnu: python-pygments: Update to 2.1.3. 
* gnu/packages/python.scm (python-pygments): Update to 2.1.3.
 2016-12-31 15:27:23 +01:00
Kei Kebreau c055a37c8c
gnu: tiled: Update to 0.18.0. 
* gnu/packages/game-development.scm (tiled): Update to 0.18.0.
 2016-12-30 21:45:51 -05:00
ng0 da62a4a19e
gnu: mc: Partially fix absolute file paths. 
Partially fixes <http://bugs.gnu.org/25273>.

* gnu/packages/mc.scm (mc)[arguments]: Add new phase 'fix-absolutism.
This substitutes absolute file paths with functional file paths.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-31 01:44:04 +01:00
Troy Sankey 0f391063d9
gnu: pius: Update to 2.2.2-0.891687c. 
* gnu/packages/gnupg.scm (pius): Update to 2.2.2-0.891687c.
[inputs]: Change GNUPG-2.0 to GNUPG (2.1).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-31 01:44:04 +01:00
José Miguel Sánchez García 68415aa4e1
gnu: libtermkey: Update to 0.19. 
* gnu/packages/terminals.scm (libtermkey): Update to 0.19.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2016-12-30 16:15:25 -05:00
Leo Famulari 858b9afeaf
gnu: libpng: Mention CVE-2016-10087. 
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: Rename to ...
* gnu/packages/patches/libpng-CVE-2016-10087.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust.
* gnu/packages/image.scm (libpng/fixed)[source]: Use renamed patch.
 2016-12-30 14:33:21 -05:00
Mark H Weaver 4037e5f52b
gnu: linux-libre@4.1: Update to 4.1.37. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.37.
 2016-12-30 04:26:11 -05:00
Ben Woodcroft a29929b32c
gnu: multiqc: Update to 0.9. 
Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>.

* gnu/packages/bioinformatics.scm (multiqc): Update to 0.9.
[origin]: Add patch.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-12-30 17:22:43 +10:00
Chris Marusich 95d7d0c57f
gnu: elogind: Enable ACL support. 
* gnu/packages/freedesktop.scm (elogind) [inputs]: Add acl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-29 23:42:23 +01:00
Ludovic Courtès 3547a5effe
services: Add libmtp's udev rules to '%desktop-services'. 
Suggested by Chris Marusich <cmmarusich@gmail.com>.

* gnu/services/desktop.scm (%desktop-services): Add 'mtp' service via
call to 'simple-service'.
 2016-12-29 23:35:42 +01:00
Leo Famulari 87b5209558
gnu: mpd: Install systemd service files. 
* gnu/packages/mpd.scm (mpd)[arguments]: Add 'install-service-files' phase.
 2016-12-29 17:28:34 -05:00
Ricardo Wurmus 76b64381cb
gnu: r-genomicfeatures: Update to 1.26.2. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.2.
 2016-12-29 22:24:12 +01:00
Ricardo Wurmus 2f642e5229
gnu: r-biostrings: Update to 2.42.1. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 72c2693b9e
gnu: r-limma: Update to 3.30.7. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.7.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 5796af9981
gnu: r-variantannotation: Update to 1.20.2. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.2.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 5d3acc0b36
gnu: r-edger: Update to 3.16.5. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.5.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 81a17b61e7
gnu: r-genomeinfodb: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 54d9b568fc
gnu: r-iranges: Update to 2.8.1. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 86fc9c4a2c
gnu: r-s4vectors: Update to 0.12.1. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus c8ad8b6976
gnu: r-biocstyle: Update to 2.2.1. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.2.1.
 2016-12-29 22:24:10 +01:00
Ricardo Wurmus 007ee80277
gnu: r-deseq2: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.1.
 2016-12-29 22:24:10 +01:00
Ricardo Wurmus d0f0579e6f
gnu: r-annotate: Update to 1.52.1. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.1.
[propagated-inputs]: Add r-rcurl.
 2016-12-29 22:24:10 +01:00
Leo Famulari a57495e27a
gnu: khard: Update to 0.11.3. 
* gnu/packages/mail.scm (khard): Update to 0.11.3.
[arguments]: Build with python instead of python-2. Remove
'disable-egg-compression' phase.
[propagated-inputs]: Don't use python-2 variants of propagated-inputs.
 2016-12-29 16:12:13 -05:00
Ricardo Wurmus 35bb2ff88a
gnu: r-rsqlite: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus 28c041afe8
gnu: Add r-plogr. 
* gnu/packages/statistics.scm (r-plogr): New variable.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus ab607061cd
gnu: r-hmisc: Update to 4.0-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus 0811f0f9d2
gnu: Add r-base64. 
* gnu/packages/statistics.scm (r-base64): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus ca380feb37
gnu: r-rmarkdown: Update to 1.3. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus 046e27e3f5
gnu: Add r-rprojroot. 
* gnu/packages/statistics.scm (r-rprojroot): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus b1c1f4d012
gnu: armadillo: Update to 7.600.2. 
* gnu/packages/maths.scm (armadillo): Update to 7.600.2.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus c729d3dc0e
gnu: r-zoo: Update to 1.7-14. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 53941eb7a5
gnu: r-fastcluster: Update to 1.1.22. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3a181dc46e
gnu: r-plotly: Update to 4.5.6. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 54aa6eb6ee
gnu: r-r-rsp: Update to 0.40.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 1a44753b95
gnu: r-r-utils: Update to 2.5.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 62350c0797
gnu: r-coda: Update to 0.19-1. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-1.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3607afbe4c
gnu: r-chron: Update to 2.3-48. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-48.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus eaec5506ad
gnu: r-knitr: Update to 1.15.1. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1.
[propagated-inputs]: Remove r-formatr.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus fd7810d323
gnu: r-bh: Update to 1.62.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus dd4ae2950a
gnu: r-svglite: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 48a87bbe3b
gnu: r-gdtools: Update to 0.1.3. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus ab01f1cdb1
gnu: r-ggplot2: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0.
[propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and
r-tibble.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus b94b03b7fa
gnu: r-scales: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-scales): Update to 0.4.1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 8a8fc31c6a
gnu: r-mgcv: Update to 1.8-16. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 421f7772b4
gnu: r-qtl: Update to 1.40-8. 
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.40-8.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 2a1c1b8074
gnu: r-hms: Update to 0.3. 
* gnu/packages/statistics.scm (r-hms): Update to 0.3.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 85455a08f4
gnu: r-git2r: Update to 0.17.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus abb6f0540e
gnu: r-ade4: Update to 1.7-5 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus db1b38af4e
gnu: r-xml: Update to 3.98-1.5. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5.
[propagated-inputs]: Remove r-rcurl.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 773a50114c
gnu: r-sparsem: Update to 1.74. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.74.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 76ce7c3767
gnu: r-data-table: Update to 1.10.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0.
[propagated-inputs]: Remove r-chron.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 58b93ad5d9
gnu: r-estimability: Update to 1.2. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.2.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus eebac90aa8
gnu: r-rcpp: Update to 0.12.8. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus 9cdf10f1c9
gnu: r-yaml: Update to 2.1.14. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus c616810720
gnu: r-htmlwidgets: Update to 0.8. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.8.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus f4ca28d911
gnu: r-curl: Update to 2.3. 
* gnu/packages/web.scm (r-curl): Update to 2.3.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus d3122150ca
gnu: r-servr: Update to 0.5. 
* gnu/packages/web.scm (r-servr): Update to 0.5.
 2016-12-29 21:49:08 +01:00
Alex Kost deb6276dda
Remove Emacs interface. 
* emacs/guix-about.el: Remove file.
* emacs/guix-backend.el: Likewise.
* emacs/guix-base.el: Likewise.
* emacs/guix-buffer.el: Likewise.
* emacs/guix-build-log.el: Likewise.
* emacs/guix-command.el: Likewise.
* emacs/guix-config.el.in: Likewise.
* emacs/guix-devel.el: Likewise.
* emacs/guix-entry.el: Likewise.
* emacs/guix-external.el: Likewise.
* emacs/guix-geiser.el: Likewise.
* emacs/guix-guile.el: Likewise.
* emacs/guix-help-vars.el: Likewise.
* emacs/guix-helper.scm.in: Likewise.
* emacs/guix-history.el: Likewise.
* emacs/guix-hydra-build.el: Likewise.
* emacs/guix-hydra-jobset.el: Likewise.
* emacs/guix-hydra.el: Likewise.
* emacs/guix-info.el: Likewise.
* emacs/guix-init.el: Likewise.
* emacs/guix-license.el: Likewise.
* emacs/guix-list.el: Likewise.
* emacs/guix-location.el: Likewise.
* emacs/guix-main.scm: Likewise.
* emacs/guix-messages.el: Likewise.
* emacs/guix-pcomplete.el: Likewise.
* emacs/guix-popup.el: Likewise.
* emacs/guix-prettify.el: Likewise.
* emacs/guix-profiles.el: Likewise.
* emacs/guix-read.el: Likewise.
* emacs/guix-ui-generation.el: Likewise.
* emacs/guix-ui-license.el: Likewise.
* emacs/guix-ui-location.el: Likewise.
* emacs/guix-ui-package.el: Likewise.
* emacs/guix-ui-system-generation.el: Likewise.
* emacs/guix-ui.el: Likewise.
* emacs/guix-utils.el: Likewise.
* emacs/local.mk: Likewise.
* doc/emacs.texi: Likewise.
* doc/guix.texi: Remove cross-references to Emacs nodes.
(Package Management): Mention 'emacs-guix' package.
* doc/contributing.texi (The Perfect Setup): Remove the reference.
* doc/htmlxref.cnf: Add 'emacs-guix' URL.
* Makefile.am: Remove Emacs stuff.
* configure.ac: Likewise.
* gnu/packages/package-management.scm (guix-0.12.0)[native-inputs]:
Remove "emacs".
[propagated-inputs]: Remove "geiser" and "emacs-magit-popup".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-29 23:40:24 +03:00
Ricardo Wurmus 94a6f20baf
gnu: r-colorspace: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2.
 2016-12-29 20:10:07 +01:00
Raoul Jean Pierre Bonnal 2fd261a37a
gnu: Add r-statmod. 
* gnu/packages/statistics.scm (r-statmod): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 294304169a
gnu: Add r-ggbeeswarm. 
* gnu/packages/statistics.scm (r-ggbeeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 649d0c4841
gnu: Add r-sourcetools. 
* gnu/packages/statistics.scm (r-sourcetools): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 6ba279853c
gnu: Add r-beeswarm. 
* gnu/packages/statistics.scm (r-beeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 069581351b
gnu: Add r-vipor. 
* gnu/packages/statistics.scm (r-vipor): New variable.
 2016-12-29 19:54:58 +01:00
Leo Famulari fc604eda3d
gnu: libpng-1.2: Update to 1.2.57 [security update]. 
* gnu/packages/image.scm (libpng-1.2): Update to 1.2.57.
[replacement]: New field.
 2016-12-29 13:41:43 -05:00
Leo Famulari 322e724bfa
gnu: libpng: Fix a null pointer dereference [fixes security issue]. 
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libpng)[replacement]: New field.
(libpng/fixed): New variable.
 2016-12-29 13:36:00 -05:00
Leo Famulari d835c6cc4b
gnu: mpd: Update to 0.19.21. 
* gnu/packages/mpd.scm (mpd): Update to 0.19.21.
 2016-12-29 11:30:31 -05:00
ng0 b954256337
gnu: rustc: Update to 1.14.0. 
* gnu/packages/rust.scm (rustc): Update to 1.14.0.
  %rust-bootstrap-binaries: Update to 1.13.0.

Signed-off-by: David Craven <david@craven.ch>
 2016-12-29 12:38:23 +01:00
Ricardo Wurmus e62e975b1f
gnu: mu: Avoid bootstrapping. 
* gnu/packages/mail.scm (mu)[arguments]: Rename "patch-configure.ac" to
"patch-configure" and only patch "configure" script; remove "autoreconf"
phase.
[native-inputs]: Remove "autoconf", "automake", "libtool", and
"texinfo".
 2016-12-29 09:20:08 +01:00
Ricardo Wurmus e7b9da2411
gnu: mu: Update to 0.9.18. 
* gnu/packages/mail.scm (mu): Update to 0.9.18.
 2016-12-29 08:58:57 +01:00
Tobias Geerinckx-Rice 43c0b9beaf
gnu: perl-zip: Update to 1.59. 
* gnu/packages/zip.scm (perl-zip): Update to 1.59.
 2016-12-29 05:37:01 +01:00
ng0 d5bbf806f3
gnu: Add python-trollius-redis. 
* gnu/packages/python.scm (python-trollius-redis, python2-trollius-redis): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0 789de5e279
gnu: Add python-straight-plugin. 
* gnu/packages/python.scm (python-straight-plugin, python2-straight-plugins):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0 a0e41de4ab
gnu: Add python-openid-teams. 
* gnu/packages/python.scm (python-openid-teams, python2-openid-teams): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0 03702173f1
gnu: Add python-openid-cla. 
* gnu/packages/python.scm (python-openid-cla, python2-openid-cla): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0 3ef00f5609
gnu: Add python2-openid. 
* gnu/packages/python.scm (python2-openid): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0 0151a8df22
gnu: Add python-pygit2. 
* gnu/packages/python.scm (python-pygit2, python2-pygit2): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0 460fccd4b3
gnu: Add python-munch. 
* gnu/packages/python.scm (python-munch, python2-munch): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0 9f21414de4
gnu: Add python-kitchen. 
* gnu/packages/python.scm (python-kitchen, python2-kitchen): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0 a2c7d88e74
gnu: Add python-flask-multistatic. 
* gnu/packages/python.scm (python-flask-multistatic, python2-flask-multistatic):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0 a7ad802be5
gnu: Add python-flask-wtf. 
* gnu/packages/python.scm (python-flask-wtf, python2-flask-wtf): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:45 -05:00
Tobias Geerinckx-Rice 50f7da2fc8
gnu: xonsh: Update to 0.5.1. 
* gnu/packages/shells.scm (xonsh): Update to 0.5.1.
 2016-12-29 02:38:21 +01:00
Tobias Geerinckx-Rice 6a34f4ccc8
gnu: python-prompt-toolkit: Update to 1.0.9. 
* gnu/packages/python.scm (python-prompt-toolkit): Update to 1.0.9.
 2016-12-29 02:38:21 +01:00
Tobias Geerinckx-Rice 791ac6a68d
gnu: python-markdown: Update to 2.6.7. 
* gnu/packages/python.scm (python-markdown): Update to 2.6.7.
 2016-12-29 02:38:20 +01:00
Tobias Geerinckx-Rice 2ee57340f4
gnu: python-numexpr: Update to 2.6.1. 
* gnu/packages/python.scm (python-numexpr): Update to 2.6.1.
 2016-12-29 02:38:20 +01:00
Tobias Geerinckx-Rice ffb1e98d74
gnu: python-babel: Update to 2.3.4. 
* gnu/packages/python.scm (python-babel): Update to 2.3.4.
 2016-12-29 02:38:20 +01:00
Manolis Ragkousis 1d9c889881
gnu: glibc-hurd: Update to 2.23. 
* gnu/packages/base.scm (glibc/hurd)[version]: Update to version 2.23.
 2016-12-28 21:14:20 +02:00
Marius Bakke 517c3207d3
gnu: rofi: Update to 1.3.0. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.3.0.
 2016-12-28 18:00:02 +01:00
Tobias Geerinckx-Rice 48dc9f3af3
gnu: znc: Update to 1.6.4. 
* gnu/packages/messaging.scm (znc): Update to 1.6.4.
 2016-12-28 05:14:05 +01:00
Nicolas Goaziou 4dbaa12f5d
gnu: wireshark: Update to 2.2.3. 
* gnu/packages/networking.scm (wireshark): Update to 2.2.3.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 17:05:07 +01:00
Nicolas Goaziou d531b9fdfe
gnu: emacs-org: Update to 20161224. 
* gnu/packages/emacs.scm (emacs-org): Update to 20161224.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 17:03:45 +01:00
Stefan Reichoer 9e6c7c425e
gnu: Add httpstat. 
* gnu/packages/networking.scm (httpstat): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 16:56:34 +01:00
Thomas Danckaert ea8450c82a
gnu: Add python-netcdf4. 
* gnu/packages/python.scm (python-netcdf4, python2-netcdf4): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 16:30:59 +01:00
Ricardo Wurmus 2c8d6c0be4
gnu: r-rcas: Update to 1.1.1. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.1.1.
[propagated-inputs]: Add plotrix.
 2016-12-27 14:50:55 +01:00
Leo Famulari 1194575b3c
gnu: python-pycrypto: Add TODO "removal" comment. 
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto): Add
comment.
 2016-12-26 19:51:54 -05:00
Leo Famulari 4de2a710a6
gnu: python-stem: Don't use python-pycrypto. 
Python-pycrypto is an optional dependency of python-stem. Python-pycrypto is
unmaintained [0] and contains an exploitable buffer overflow bug [1].

[0] https://github.com/dlitz/pycrypto/issues/173
[1] https://github.com/dlitz/pycrypto/issues/176

* gnu/packages/python.scm (python-stem, python2-stem)[propagated-inputs]: Remove
python-pycrypto.
 2016-12-26 19:51:49 -05:00
ng0 91426243f1
gnu: awesome: Update to 4.0. 
* gnu/packages/wm.scm (awesome): Update to 4.0.
[source]: Adjust URL.
[inputs]: Add xcb-util-xrm and libxkbcommon.
* gnu/packages/patches/awesome-reproducible-png.patch: Adjust patch.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-26 19:13:27 -05:00
Ben Woodcroft 9916ef8bb6
gnu: diamond: Update to 0.8.30. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.30.
 2016-12-27 09:18:05 +10:00
Leo Famulari c976b319fe
gnu: python-stem: Update to 1.5.3. 
* gnu/packages/python.scm (python-stem, python2-stem): Update to 1.5.3.
[source]: Update URL.
 2016-12-26 13:20:52 -05:00
Ben Woodcroft f1775db660
gnu: ruby-minitest: Update to 5.10.1. 
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.10.1.
 2016-12-26 22:43:59 +10:00
Roel Janssen 328398e752
gnu: Add ripit. 
* gnu/packages/cdrom.scm (ripit): New variable.
 2016-12-26 12:58:29 +01:00
Roel Janssen fb222fb2b0
gnu: Add perl-cddb-get. 
* gnu/packages/perl.scm (perl-cddb-get): New variable.
 2016-12-26 12:45:48 +01:00
Alex Kost b2f1f7b0d9
gnu: emacs-guix: Update to 0.2.1. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.2.1.
 2016-12-26 13:53:53 +03:00
Efraim Flashner 9f74424f37
gnu: xf86-video-qxl: Update to 0.1.5. 
* gnu/packages/xorg.scm (xf86-video-qxl): Update to 0.1.5.
 2016-12-26 04:32:05 +02:00
Ricardo Wurmus 33ca551731
gnu: Add roffit. 
* gnu/packages/groff.scm (roffit): New variable.
 2016-12-25 22:02:39 +01:00
Efraim Flashner f077aa2b29
gnu: libevdev: Update to 1.5.5. 
* gnu/packages/xorg.scm (libevdev): Update to 1.5.5.
[houme-page]: Use https.
 2016-12-25 16:16:10 +02:00
Efraim Flashner db10a5e78a
gnu: libinput: Update to 1.5.3. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.5.3.
 2016-12-25 16:16:00 +02:00
Marius Bakke 4a95b3882d
gnu: exim: Update to 4.87.1 [fixes CVE-2016-9963]. 
* gnu/packages/mail.scm (exim): Update to 4.87.1.
 2016-12-25 13:53:17 +01:00
Taylan Ulrich Bayırlı/Kammer d02fb7cec6
gnu: leptonica: Update to 1.74.0. 
* gnu/packages/image.scm (leptonica): Update to 1.74.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-25 13:48:57 +01:00
Efraim Flashner c88bee0ace
gnu: font-gnu-unifont: Update to 9.0.06. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 9.0.06.
 2016-12-25 05:04:20 +02:00
Leo Famulari 3a2bcac6bd
gnu: libxml2: Fix CVE-2016-5131. 
* gnu/packages/patches/libxml2-CVE-2016-5131.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxml2/fixed)[source]: Add it.
 2016-12-24 19:19:36 -05:00
Leo Famulari 0c83c6bf26
gnu: libxml2: Fix CVE-2016-4658. 
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.
* gnu/packages/patches/libxml2-CVE-2016-4658.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-12-24 19:19:32 -05:00
Efraim Flashner daa481f59a
gnu: qt: Update to 5.7.1. 
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtwebchannel, qtlocation,
qttools, qtscript, qtquickcontrols, qtquickcontrols2, qtgraphicaleffects,
qtwebkit): Update to 5.7.1.
 2016-12-25 01:49:36 +02:00
Efraim Flashner 457d154fdf
gnu: alsa-utils: Update to 1.1.3. 
* gnu/packages/linux.scm (alsa-utils): Update to 1.1.3.
 2016-12-25 01:47:22 +02:00
Efraim Flashner 7604106f2c
gnu: busybox: Update to 1.26.0. 
* gnu/packages/busybox.scm (busybox): Update to 1.26.0.
[arguments]: Enable previously broken grep test.
 2016-12-25 01:47:22 +02:00
Thomas Danckaert db82557013
gnu: netcdf: Enable HDF4 support. 
* gnu/packages/maths.scm (netcdf)[inputs]: Add hdf4-alt and libjpeg.
  [arguments]: Add "--enable-hdf4" configure flag.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-24 14:41:50 +01:00
Marius Bakke f7fb34a06c
gnu: notmuch: Update to 0.23.4. 
* gnu/packages/mail.scm (notmuch, python-notmuch, python2-notmuch): Update to
0.23.4.
 2016-12-24 14:26:39 +01:00
Tobias Geerinckx-Rice b672e1ed1e
gnu: moreutils: Update to 5.9. 
* gnu/packages/moreutils.scm (moreutils): Update to 5.9.
[source]: Update the fall-back Debian snapshot URL.
[inputs]: Move docbook-xml, docbook-xsl, libxml2, and libxslt from here...
[native-inputs]: ...to this new variable.
[arguments]: Delete the configure phase altogether.  Set the DOCBOOKXSL path
in #:make-flags instead.
[home-page]: Use HTTPS.
 2016-12-24 03:19:03 +01:00
Tobias Geerinckx-Rice 4d2fd1c016
gnu: yadifa: Explicitly enable DNSSEC & caching. 
* gnu/packages/dns.scm (yadifa)[arguments]: Add configure flags to
consistently enable the ‘nsec’, ‘nsec3’, ‘tsig’, and ‘caching’ features.
 2016-12-23 23:54:15 +01:00
Tobias Geerinckx-Rice 8769d482ef
gnu: yadifa: Update to 2.2.3. 
* gnu/packages/dns.scm (yadifa): Update to 2.2.3.
[version, source]: Remove monotonic revision number from the version
string.  Use it only to reconstruct the download URL.
 2016-12-23 23:54:15 +01:00
Kei Kebreau eed2a95e9f
gnu: minetest: Update to 0.4.15. 
* gnu/packages/games.scm (minetest-data, minetest): Update to 0.4.15.
 2016-12-23 17:34:41 -05:00
Tobias Geerinckx-Rice 41d23dd1e2
gnu: btrfs-progs: Update to 4.9. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.9.
 2016-12-23 20:29:18 +01:00
ng0 50e9f81a22
gnu: gnurl: Split man pages to doc output. 
* gnu/packages/gnunet.scm (gnurl)[arguments]: Add 'move-man3-pages' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-23 11:58:03 -05:00
ng0 4ec08b637b
gnu: gnurl: Make tests more verbose. 
* gnu/packages/gnunet.scm (gnurl)[arguments]: Replace the 'check' phase.
Move the 'disable-test1026' and 'patch-runtests' phases into 'check' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-23 11:58:03 -05:00
ng0 a0e43c9fa7
gnu: gnurl: Update to 7.52.1 [fixes CVE-2016-{9586, 9952, 9953, 9594}]. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.52.1.
[arguments]: Add 'autoconf' and 'disable-test1026' phases.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-23 11:58:02 -05:00
Chris Marusich 426e6083ae
gnu: Add asunder. 
* gnu/packages/cdrom.scm (asunder): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-23 11:34:42 -05:00
Marius Bakke d0f1673dc3
gnu: dnscrypt-proxy: Update to 1.8.1. 
* gnu/packages/dns.scm (dnscrypt-proxy): Update to 1.8.1.
 2016-12-23 15:53:51 +01:00
Marius Bakke 14251e30c4
gnu: curl: Update replacement to 7.52.1 [fixes CVE-2016-{9586,9594}]. 
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.52.1.
[home-page]: Use HTTPS.
(curl-7.51.0): Replace with ...
(curl-7.52.1): ... this.
 2016-12-23 15:31:36 +01:00
Bake Timmons b881dc6d98
gnu: Add wwwoffle. 
* gnu/packages/web.scm (wwwoffle): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-23 15:18:02 +01:00
Thomas Danckaert d205f895ca
gnu: Add python-hdf4. 
* gnu/packages/python.scm (python-hdf4, python2-hdf4): New variables.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-23 14:51:56 +01:00
Leo Famulari 4b4ff6938d
gnu: qsyncthingtray: Update to 0.5.7. 
* gnu/packages/sync.scm (qsyncthingtray): Update to 0.5.7.
 2016-12-23 02:01:28 -05:00
Kei Kebreau e813f3956e
gnu: xonsh: Fix description. 
* gnu/packages/shells.scm (xonsh)[description]: Two spaces after a period.
 2016-12-22 18:06:56 -05:00
Efraim Flashner a532a6711e
gnu: qtimageformats: Add jasper support. 
* gnu/packages/qt.scm (qtimageformats)[inputs]: Add jasper.
 2016-12-23 01:01:27 +02:00
Stefan Reichör 572ee05c31
gnu: xonsh: Update to 0.5.0. 
* gnu/packages/shells.scm (xonsh): Update to 0.5.0.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-12-22 17:59:41 -05:00
Marius Bakke 059b3aa9c3
gnu: gnupg: Fix build on 32-bit architectures. 
* gnu/packages/patches/gnupg-test-segfault-on-32bit-arch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
 2016-12-22 15:05:50 +01:00
Ricardo Wurmus 8e401ab6db
gnu: python-scikit-learn: Update to 0.18.1. 
* gnu/packages/python.scm (python-scikit-learn): Update to 0.18.1.
[arguments]: Remove special "check" phase.
[native-inputs]: Add python-cython.
 2016-12-22 13:19:20 +01:00
Leo Famulari 8bf4a6aecd
gnu: shotwell: Update to 0.25.2. 
* gnu/packages/gnome.scm (shotwell): Update to 0.25.2.
 2016-12-22 02:54:42 -05:00