2bfa61c034
gnu: linux-libre@4.4: Update to 4.4.23.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.23.
2016-10-01 18:20:28 -04:00
09a86196e9
gnu: guitarix: Update to 0.35.1.
...
* gnu/packages/audio.scm (guitarix): Update to 0.35.1.
2016-10-01 22:31:10 +02:00
89fa2219a7
gnu: eigen: Update to 3.2.9.
...
* gnu/packages/algebra.scm (eigen): Update to 3.2.9.
2016-10-01 21:36:36 +02:00
d70f5139da
gnu: julia: Update to 0.5.0.
...
* gnu/packages/julia.scm (libuv-julia): Update to commit
8d5131b6c1595920dd30644cd1435b4f344b46c8.
(libunwind-for-julia): New variable.
(julia): Update to 0.5.0.
[arguments]: Disable stripping of binaries; modify "prepare-deps" phase;
add "fix-llvm-flag" phase; add "set-home" phase; adjust
"hardcode-soname-map" phase; remove fix for "double-conversion" from
"fix-include-and-link-paths" phase; enable "repl" and "replcompletions"
tests; disable "backtrace", "compile", "replutil", and "cmdlineargs"
tests; remove USE_SYSTEM_RMATH flag; remove USE_SYSTEM_GRISU flag.
[inputs]: Replace "llvm-3.5" with "llvm"; replace "libunwind" with
"libunwind-for-julia"; remove "double-conversion"; remove "rmath-julia";
update "suitesparse" origin; replace "virtualenv" origin with
"python2-virtualenv".
[native-inputs]: Add "openssl".
2016-10-01 21:36:36 +02:00
9b72ce60fb
gnu: utf8proc: Update to 2.0.2.
...
* gnu/packages/textutils.scm (utf8proc): Update to 2.0.2.
2016-10-01 21:36:35 +02:00
917de2511b
gnu: gd: Fix CVE-2016-7568.
...
* gnu/packages/patches/gd-CVE-2016-7568.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
2016-10-01 12:27:37 -04:00
43f7af428e
gnu: rpcbind-configuration: Rename pkg to nfs-utils
...
* gnu/services/nfs.scm (<rpcbind-configuration>): "pkg" --> "nfs-utils"
2016-10-01 09:26:07 +02:00
37356e0bf8
gnu: Add quickswitch-i3.
...
* gnu/packages/wm.scm (quickswitch-i3): New variable.
* gnu/packages/patches/quickswitch-fix-dmenu-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-01 10:56:11 +08:00
c165591d47
gnu: Add python-i3-py.
...
* gnu/packages/wm.scm (python-i3-py, python2-i3-py): New variables.
Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-01 10:44:44 +08:00
f1b61e26ae
gnu: Add emacs-rudel.
...
* gnu/packages/emacs.scm (emacs-rudel): New variable.
Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-01 10:22:31 +08:00
df0e8a239b
gnu: shroud: Wrap 'shroud' with 'GUILE_LOAD_COMPILED_PATH'.
...
* gnu/packages/password-utils.scm (shroud)[arguments]: New field.
2016-10-01 08:50:48 +08:00
ebb9b9a60c
gnu: tmux: Update to 2.3.
...
* gnu/packages/tmux.scm (tmux): Update to 2.3.
2016-09-30 19:49:08 -04:00
bddf22b99e
gnu: libreoffice: Update to 5.1.5.2.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.5.2.
2016-09-30 01:17:24 -04:00
cfb7e269e9
gnu: xonsh: Remove bundled PLY.
...
* gnu/packages/shells.scm (xonsh)[source]: Add snippet to remove bundled
python-ply.
[inputs]: Add python-ply.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-29 17:13:05 -04:00
86d8f6d3ef
services: Add 'openssh-service'.
...
* gnu/packages/ssh.scm (openssh)[arguments]: Set sysconfdir to /etc/ssh.
* gnu/services/ssh.scm (<openssh-configuration>): New record type.
(%openssh-accounts): New variable.
(openssh-activation, openssh-config-file, openssh-shepherd-service)
(openssh-service): New procedures.
(openssh-service-type): New variable.
* doc/guix.texi (Networking Services): Document 'openssh-services'.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 23:11:48 +02:00
01c5c21a67
gnu: emacs: Build with m17n support.
...
* gnu/packages/emacs.scm (emacs): Build with m17n support.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:33 +02:00
a80b60f484
gnu: Add m17n-lib.
...
* gnu/packages/emacs.scm (m17n-lib): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:33 +02:00
154c71e003
gnu: Add m17n-db.
...
* gnu/packages/emacs.scm (m17n-db): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:32 +02:00
0da1b7062a
gnu: c-ares: Update to 1.12.0 [fixes CVE-2016-5180].
...
* gnu/packages/adns.scm (c-ares): Update to 1.12.0.
[source]: Use HTTPS URL.
[home-page]: Use HTTPS URL.
2016-09-29 11:18:52 -04:00
b9f7895d39
Revert "gnu: %default-extra-linux-options: Remove redundant options."
...
Options aren't redundant and are required for building the initrd.
This reverts commit 50dbc03647
2016-09-29 12:59:37 +02:00
d06ce0466f
gnu: dbus-c++: License has "or later" clause.
...
* gnu/packages/glib.scm (dbus-c++)[license]: Change to LGPL2.1+.
2016-09-29 09:01:22 +02:00
2320e76b82
gnu: sra-tools: Fix build on i686.
...
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass
"VDB_LIBDIR" in make-flags; dynamically link libmagic.
2016-09-28 22:30:41 +02:00
37042a0fb4
gnu: tilda: Update to 1.3.3.
...
* gnu/packages/terminals.scm (tilda): Update to 1.3.3.
2016-09-28 21:38:38 +03:00
1d51585573
gnu: Add xonsh.
...
* gnu/packages/shells.scm (xonsh): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-28 13:42:06 -04:00
b2fe918302
gnu: attic: Superseded by borg.
...
* gnu/packages/backup.scm (attic)[properties]: New field.
2016-09-28 13:07:06 -04:00
415ee287fa
gnu: nestopia-ue: Update to version 1.47.
2016-09-28 17:00:35 +02:00
dac65f90b6
gnu: higan: Update to version 101.
...
* gnu/packages/games.scm (higan): Update to version 101.
2016-09-28 17:00:12 +02:00
b411517a19
gnu: git: Add input perl-term-readkey for 'git-svn'.
...
* gnu/packages/version-control.scm (git)[inputs]: Add perl-term-readkeys.
[arguments]: Add perl-term-readkeys to the PERL5LIB of `git-svn'.
Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-09-28 21:23:47 +08:00
7a0630035c
gnu: linux-libre-beagle-bone-black: Remove kernel variant.
...
linux-libre-beagle-bone-black is misslabeled. This kernel variant is
for the original beagle board.
* gnu/packages/linux.scm (linux-libre-beagle-bone-black): Remove.
2016-09-28 12:40:12 +02:00
e4e9c0a083
gnu: make-linux-libre: Install device tree files.
...
* gnu/packages/linux.scm (make-linux-libre): Install device tree files.
2016-09-28 12:40:12 +02:00
50dbc03647
gnu: %default-extra-linux-options: Remove redundant options.
...
* gnu/packages/linux.scm (%default-extra-linux-options): Remove
redundant options.
2016-09-28 12:40:12 +02:00
33619c3ae0
gnu: Add sdcc.
...
* gnu/packages/sdcc.scm (sdcc): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-09-28 12:40:12 +02:00
a3af70aca8
gnu: Add picocom.
...
* gnu/packages/terminals.scm (picocom): New variable.
2016-09-28 12:40:12 +02:00
615c999055
gnu: opendht: Propagate msgpack.
...
* gnu/packages/crypto.scm (opendht)[inputs]: Remove msgpack.
[propagated-inputs]: Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:45:02 +02:00
974aaf71e5
gnu: telephony: Add 'license:' prefix.
...
* gnu/packages/telephony.scm (commoncpp) [license]: Add prefix.
(ucommon) [license]: Add prefix.
(ccrtp) [license]: Add prefix.
(osip) [license]: Add prefix.
(exosip) [license]: Add prefix.
(sipwitch) [license]: Add prefix.
(libsrtp) [license]: Add prefix.
(libiax2) [license]: Add prefix.
(seren) [license]: Add prefix.
(pjproject-sfl) [license]: Add prefix.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:25:34 +02:00
9a4c032cc4
gnu: Add gsm.
...
* gnu/packages/audio.scm (gsm): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:14:42 +02:00
89eb7581a4
gnu: Add dbus-c++.
...
* gnu/packages/glib.scm (dbus-c++): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:08:33 +02:00
a7c9b062ad
gnu: libressl: Update to 2.5.0.
...
* gnu/packages/tls.scm (libressl): Update to 2.5.0.
2016-09-27 20:40:39 -04:00
ffabdc185c
gnu: encfs: Update to 1.9.1.
...
* gnu/packages/crypto.scm (encfs): Update to 1.9.1.
2016-09-28 00:20:30 +02:00
9da3c49837
gnu: btrfs-progs: Update to 4.7.3.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.7.3.
2016-09-28 00:20:30 +02:00
8c120e4f3b
gnu: zip: Use 'modify-phases'.
...
* gnu/packages/zip.scm (zip)[arguments]: Use 'modify-phases'.
2016-09-28 00:20:30 +02:00
8be2428e85
gnu: isc-dhcp: Update bundled bind to 9.9.9-P3 [fixes CVE-2016-2776].
...
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled bind to 9.9.9-P3.
2016-09-27 15:19:14 -04:00
cc132e0f38
gnu: bind: Update to 9.10.4-P3 [fixes CVE-2016-2776].
...
* gnu/packages/dns.scm (bind): Update to 9.10.4-P3.
2016-09-27 15:19:14 -04:00
e8c9b01090
gnu: Add python-q.
...
* gnu/packages/python.scm (python-q, python2-q): New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 14:54:58 -04:00
b9bc6e8420
gnu: expat: Fix regression caused by fix for CVE-2016-0718.
...
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
* gnu/packages/patches/expat-CVE-2016-0718-fix-regression.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:49:49 -04:00
32f70e1f86
gnu: Add gctp.
...
* gnu/packages/maths.scm (gctp): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:37:46 -04:00
3973e137f0
gnu: Add gloox.
...
* gnu/packages/messaging.scm (gloox): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:31:18 -04:00
419fb3f1ac
gnu: femtolisp: Don't build on mips64el or armhf.
...
* gnu/packages/lisp.scm (femtolisp)[supported-systems]: New field,
remove support for mips64el and armhf.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 12:29:35 -04:00
e9070933bf
gnu: Add gobby.
...
* gnu/packages/gobby.scm (gobby): New variable.
2016-09-27 14:46:10 +02:00
22a3cff3c8
gnu: Add obby.
...
* gnu/packages/gobby.scm (obby): New variable.
2016-09-27 14:46:10 +02:00
c8105e811b
gnu: Add libnet6.
...
* gnu/packages/gobby.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
2016-09-27 14:46:10 +02:00
b61d962723
gnu: Add libxml++-2.
...
* gnu/packages/gnome.scm (libxml++-2): New variable.
2016-09-27 14:46:10 +02:00
66329c23a1
gnu: New default Dovecot service postmaster_address
...
* gnu/services/mail.scm (dovecot-configuration): Change default for
postmaster-address, as dovecot is now requiring a non-empty value and
will fail to start up otherwise.
* doc/guix.texi (Mail Services): Update.
2016-09-27 14:45:07 +02:00
a777535cd7
gnu: aria2: Update to 1.27.1.
...
* gnu/packages/bittorrent.scm (aria2): Update to 1.27.1.
2016-09-27 14:52:48 +03:00
99caa6f75f
gnu: python-plastid: Update to 1.4.6.
...
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to
1.4.6.
[propagated-inputs]: Add python-termcolor.
2016-09-27 20:07:12 +10:00
67f66812f5
gnu: Add python-termcolor.
...
* gnu/packages/python.scm (python-termcolor, python2-termcolor): New
variables.
2016-09-27 20:07:02 +10:00
f536dce522
gnu: python-pysam: Enable tests.
...
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Change from
PyPi to source archive due to missing test data.
[arguments]: Add check phase after install.
[native-inputs]: Add python-nose, samtools and bcftools.
2016-09-27 20:06:00 +10:00
dff26b2363
gnu: python-pysam: Delete bundled htslib.
...
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Add snippet
to delete htslib.
[arguments]: Add htslib flags in 'set-flags phase.
[propagated-inputs]: New field. Add htslib.
2016-09-27 20:06:00 +10:00
397d463a12
gnu: python-pysam: Use 'modify-phases'.
...
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Use
'modify-phases'.
2016-09-27 20:06:00 +10:00
bdc7be59eb
gnu: Add bcftools.
...
* gnu/packages/bioinformatics.scm (bcftools): New variable.
2016-09-27 20:06:00 +10:00
e301bfc886
gnu: python2-pbcore: Update to 1.2.10.
...
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
2016-09-27 20:06:00 +10:00
c2efe1aea8
gnu: Add python-pyxb.
...
* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
2016-09-27 20:06:00 +10:00
fd49eb213f
gnu: python-pysam: Update to 0.9.1.4.
...
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update
to 0.9.1.4.
2016-09-27 20:05:57 +10:00
3c185b24f5
Add missing exports.
...
Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html >.
* gnu/system/file-systems.scm (%tty-gid): Export.
* guix/build-system/python.scm (default-python, default-python2):
Export.
2016-09-27 11:22:56 +02:00
9ad0965228
gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309].
...
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b.
2016-09-26 17:09:08 -04:00
8be42e5daf
gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052].
...
* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j.
(openssl-1.0.2i): Replace with...
(openssl-1.0.2j): ... new variable.
2016-09-26 17:09:05 -04:00
58478cc1cb
gnu: libftdi: Propagate the libusb input.
...
* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a
propagated-input.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-26 14:30:37 -04:00
675d7ae26f
gnu: ncbi-vdb: Only build on i686 and x86_64.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only
build on i686 and x86_64.
[arguments]: Add mandatory "-msse2" flag to CFLAGS.
2016-09-26 14:30:59 +02:00
bc600b80a2
gnu: ghc-pandoc: Update to 1.17.2.
...
* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2.
2016-09-26 14:30:59 +02:00
5a502d9abd
gnu: ghc-texmath: Update to 0.8.6.5.
...
* gnu/packages/haskell.scm (ghc-texmath): Update to 0.8.6.5.
2016-09-26 14:30:58 +02:00
2e9b1276b7
gnu: ghc-cmark: Update to 0.5.3.1.
...
* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.3.1.
2016-09-26 14:30:58 +02:00
8f1e2dca55
gnu: ghc-highlighting-kate: Update to 0.6.3.
...
* gnu/packages/haskell.scm (ghc-highlighting-kate): Update to 0.6.3.
2016-09-26 14:30:58 +02:00
ae87e4fcde
gnu: ghc-pandoc-types: Update to 1.16.1.1.
...
* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.16.1.1.
2016-09-26 14:30:58 +02:00
1da48e4302
gnu: ghc-tagsoup: Update to 0.14.
...
* gnu/packages/haskell.scm (ghc-tagsoup): Update to 0.14.
2016-09-26 14:30:58 +02:00
1a545a1e7c
gnu: tbb: Fail on test errors.
...
* gnu/packages/tbb.scm (tbb)[arguments]: Add phase
"fail-on-test-errors".
2016-09-26 14:30:58 +02:00
ba4529c4f7
gnu: ghc-tls: Update to 1.3.8.
...
* gnu/packages/haskell.scm (ghc-tls): Update to 1.3.8.
2016-09-26 14:30:57 +02:00
7f5ca399bf
gnu: tbb: Use modify-phases syntax.
...
* gnu/packages/tbb.scm (tbb)[arguments]: Use "modify-phases" syntax.
2016-09-26 14:30:57 +02:00
af8de20386
gnu: vsearch: Update to 2.1.1.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.1.
2016-09-26 20:35:32 +10:00
204adc3017
gnu: azr3: Fix libsigc++ build errors.
...
* gnu/packages/audio.scm (azr3)[arguments]: Add "-std=gnu++11" flag.
[source]: Add patch.
* gnu/packages/patches/azr3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-26 10:47:58 +02:00
3ef08dceb3
gnu: qtractor: Update to 0.7.9.
...
* gnu/packages/music.scm (qtractor): Update to 0.7.9.
2016-09-26 08:16:13 +02:00
f3cfe4515a
gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene.
...
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene):
New variable.
2016-09-26 07:47:55 +02:00
684f29bd2e
gnu: Add r-grohmm.
...
* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
2016-09-26 07:47:55 +02:00
7f903d7300
gnu: Add r-systempiper.
...
* gnu/packages/bioinformatics.scm (r-systempiper): New variable.
2016-09-26 07:47:55 +02:00
cb99d457f0
gnu: Add r-shortread.
...
* gnu/packages/bioinformatics.scm (r-shortread): New variable.
2016-09-26 07:47:54 +02:00
89f40c5e4e
gnu: Add r-gostats.
...
* gnu/packages/bioinformatics.scm (r-gostats): New variable.
2016-09-26 07:47:54 +02:00
1a1931f7e0
gnu: Add r-category.
...
* gnu/packages/bioinformatics.scm (r-category): New variable.
2016-09-26 07:47:54 +02:00
ad740ff818
gnu: Add r-gseabase.
...
* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
2016-09-26 07:47:53 +02:00
cd9e7dc7ff
gnu: Add r-rbgl.
...
* gnu/packages/bioinformatics.scm (r-rbgl): New variable.
2016-09-26 03:25:23 +02:00
e816377374
gnu: Add r-annotationforge.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
2016-09-26 03:25:17 +02:00
9e330278ee
gnu: Add r-batchjobs.
...
* gnu/packages/statistics.scm (r-batchjobs): New variable.
2016-09-26 03:25:11 +02:00
dc4fb16d25
gnu: Add r-fail.
...
* gnu/packages/statistics.scm (r-fail): New variable.
2016-09-26 03:25:06 +02:00
cd26ec3bbf
gnu: Add r-bbmisc.
...
* gnu/packages/statistics.scm (r-bbmisc): New variable.
2016-09-26 03:25:02 +02:00
929d4aaea1
gnu: Add r-checkmate.
...
* gnu/packages/statistics.scm (r-checkmate): New variable.
2016-09-26 03:24:59 +02:00
0d90462fa3
gnu: Add r-backports.
...
* gnu/packages/statistics.scm (r-backports): New variable.
2016-09-26 03:24:55 +02:00
8e1bfc7e8c
gnu: Add r-sendmailr.
...
* gnu/packages/statistics.scm (r-sendmailr): New variable.
2016-09-26 03:24:50 +02:00
0c77fd50f8
gnu: Add r-pheatmap.
...
* gnu/packages/statistics.scm (r-pheatmap): New variable.
2016-09-26 03:24:44 +02:00
092197a548
gnu: Add r-matrix.
...
* gnu/packages/statistics.scm (r-matrix): New variable.
2016-09-26 03:21:32 +02:00
ad34f0ac96
gnu: Add r-deseq2.
...
* gnu/packages/bioinformatics.scm (r-deseq2): New variable.
2016-09-26 03:21:27 +02:00
2301fd3e4d
gnu: Add r-genefilter.
...
* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
2016-09-26 03:21:19 +02:00
2d21d44dbd
gnu: Add r-hmisc.
...
* gnu/packages/statistics.scm (r-hmisc): New variable.
2016-09-26 03:21:13 +02:00
Mark H Weaver