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9764 Commits (a2a9bba43cbc32efe6a654455d1789c6964dfbc5)

Author SHA1 Message Date
Ludovic Courtès a2a9bba43c gnu: bash: Update to patch level 42. 
* gnu/packages/bash.scm (%patch-series-4.3): Add patches 40 to 42.
 2015-12-15 17:59:49 +01:00
Ludovic Courtès 775e6fe456 gnu: commencement: Initial Texinfo uses initial Perl. 
* gnu/packages/commencement.scm (texinfo-boot0)[inputs]: Use
PERL-BOOT0.
 2015-12-13 11:35:53 +01:00
Ludovic Courtès 4187fe750f gnu: perl: Build deterministically, and make byproducts deterministic. 
With this, a --rounds=2 build passes, and timestamps in POD files can be
controlled with 'SOURCE_DATE_EPOCH'.

* gnu/packages/patches/perl-deterministic-ordering.patch,
gnu/packages/patches/perl-no-build-time.patch,
gnu/packages/patches/perl-source-date-epoch.patch: New files.
* gnu/packages/perl.scm (perl)[source]: Use them.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-12-13 11:28:54 +01:00
Ludovic Courtès 4de3507483 gnu: perl: Update to 5.22.0. 
* gnu/packages/perl.scm (perl)[source]: Update to 5.22.0.  Remove
"perl-module-pluggable-search.patch" since Module::Pluggable appears to
be gone.
[arguments] <configure-phase>: Adjust Cwd.pm file name.  Replace
-std=c89 with -std=gnu89.
* gnu/packages/commencement.scm (perl-boot0): Add 'disable-pthreads'
phase.
* gnu/packages/patches/perl-no-sys-dirs.patch: Update.
* gnu/packages/patches/perl-module-pluggable-search.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2015-12-13 11:28:54 +01:00
Andreas Enge 4165fda29d gnu: gmp: Disable parallel tests. 
* gnu/packages/multiprecision.scm (gmp)[arguments]: Disable parallel tests.
 2015-12-12 14:40:37 +01:00
Ludovic Courtès 7dda44a6b9 build: Add missing patches to the distribution. 
* gnu-system.am (dist_patch_DATA): Add glibc-hurd-extern-inline.patch
and plink-1.07-unclobber-i.patch.
 2015-12-12 11:50:59 +01:00
Ludovic Courtès e82e55e58c Merge branch 'master' into core-updates 2015-12-12 11:48:46 +01:00
Andreas Enge e35dff9733 gnu: numactl: Update to 2.0.11. 
* gnu/packages/linux.scm (numactl)[source]: Update to 2.0.11.
  [native-inputs]: Drop autotools.
  [arguments]: Drop phase calling autogen.sh.
 2015-12-12 10:20:30 +01:00
Mark H Weaver 798697f673 gnu: wget: Update to 1.17.1. 
* gnu/packages/wget.scm (wget): Update to 1.17.1.
 2015-12-11 18:31:50 -05:00
Ludovic Courtès 98bd851ee8 gnu: gcc: Use the system zlib. 
* gnu/packages/gcc.scm (gcc-4.7) <configure-flags>: Pass
'--with-system-zlib'.
* gnu/packages/commencement.scm (gcc-boot0)[arguments]: Remove
'--with-system-zlib' from the configure flags.
* gnu/packages/commencement.scm (zlib-final): New variable.
(gcc-final)[arguments]: Add ZLIB-FINAL to #:allowed-references.
Pass -L and -Wl,-rpath for zlib in LDFLAGS, as a configure flag.
[inputs]: Add LD-WRAPPER-BOOT3 and ZLIB-FINAL.
 2015-12-11 23:49:10 +01:00
Ludovic Courtès 52cfd8cb54 gnu: gcc-final: Remove unnecessary CPPFLAGS. 
* gnu/packages/commencement.scm (gcc-final)[arguments]: Remove
unnecessary CPPFLAGS from #:make-flags.
 2015-12-11 23:42:39 +01:00
Ricardo Wurmus f7f55db8f6 gnu: Move sparsehash to datastructures module. 
* gnu/packages/crypto.scm (sparsehash): Move variable to...
* gnu/packages/datastructures.scm: ...new file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-12-11 15:59:20 +01:00
Ricardo Wurmus ca3476cd6c gnu: Add r-lattice. 
* gnu/packages/statistics.scm (r-lattice): New variable.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus 2a40f76389 gnu: Add r-gridbase. 
* gnu/packages/statistics.scm (r-gridbase): New variable.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus 60a9d3d0ac gnu: Add r-plotrix. 
* gnu/packages/statistics.scm (r-plotrix): New variable.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus 03af370f6e gnu: Add r-readr. 
* gnu/packages/statistics.scm (r-readr): New variable.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus 62141c07f7 gnu: Rename r-data.table to r-data-table. 
* gnu/packages/statistics.scm (r-data.table): Rename variable ...
(r-data-table): ... to this.
[description]: Clarify relation to data.frame.
[license]: Use correct license.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus 0f6b9e9828 import: cran: Parse DESCRIPTION instead of HTML. 
* guix/import/cran.scm (description->alist, listify,
  beautify-description, description->package): New procedures.
(table-datum, downloads->url, nodes->text, cran-sxml->sexp): Remove
proceduces.
(latest-release): Use parsed DESCRIPTION instead of SXML.
* tests/cran.scm: Rewrite to match importer.
 2015-12-11 15:35:07 +01:00
Ricardo Wurmus b6a222757b import: cran: Match more license strings. 
* guix/import/cran.scm (string->license): Match more license strings to
  license symbols.
 2015-12-11 15:35:07 +01:00
Ben Woodcroft 5f7e17bef7 gnu: Add snap-aligner. 
* gnu/packages/bioinformatics.scm (snap-aligner): New variable.
 2015-12-11 14:34:51 +01:00
Efraim Flashner 9a41f4439d gnu: python-certifi: Update to 2015.11.20.1. 
* gnu/packages/python.scm (python-certifi): Update to 2015.11.20.1.
[source]: Change to pypi syntax.
 2015-12-11 15:12:39 +02:00
Efraim Flashner 2e4c54573f gnu: gnumeric: Add python scripting support. 
* gnu/packages/gnome.scm (gnumeric): Do it.
[inputs]: Add python2, python2-pygobject-2.
 2015-12-11 14:18:10 +02:00
Efraim Flashner 7bcbd40dc8 gnu: gnumeric: Update to 1.12.24. 
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.24.
[inputs]: Add librsvg, libxslt.
[arguments]: Use "modify-phases" syntax.
 2015-12-11 14:18:10 +02:00
Efraim Flashner 8cabd349b4 gnu: goffice: Update to 0.10.24. 
* gnu/packages/gnome.scm (goffice): Update to 0.10.24.
 2015-12-11 14:18:10 +02:00
Efraim Flashner 24a78aa600 gnu: gvfs: Update to 1.26.2. 
* gnu/packages/gnome.scm (gvfs): Update to 1.26.2.
[inputs]: Add gcr.
 2015-12-11 14:18:10 +02:00
Alex Kost 98f4a9004b emacs: Handle compiled autoloads. 
* emacs/guix-emacs.el (guix-emacs-autoloads-regexp): New variable.
  (guix-emacs-find-autoloads-in-directory): Return a list of autoloads
  without extensions.
 2015-12-11 14:34:03 +03:00
Mark H Weaver 7534370435 gnu: linux-libre: Update to 4.3.2. 
* gnu/packages/linux.scm (linux-libre): Update to 4.3.2.
  [native-inputs]: Add openssl.
* gnu/packages/linux-libre-x86_64.conf,
  gnu/packages/linux-libre-i686.conf: Update for 4.3.x,
  based on <https://jxself.org/git/kernel-configs.git>.
 2015-12-11 00:30:38 -05:00
Efraim Flashner 5d69165797 gnu: python-requests: Update to 2.8.1. 
* gnu/packages/python.scm (python-requests): Update to 2.8.1.
[native-inputs]: Move python-setuptools here.
[inputs]: Remove python-certifi.
[propagated-inputs]: Add python-py, python-pytest, python-pytest-cov,
python-wheel.
[arguments]: Enable tests.
 2015-12-10 20:24:11 +02:00
Efraim Flashner addc808ddc gnu: Add python-wheel. 
* gnu/packages/python.scm (python-wheel, python2-wheel): New variables.
 2015-12-10 20:24:11 +02:00
Efraim Flashner 358c3d612b gnu: Add python-pytest-cov. 
* gnu/packages/python.scm (python-pytest-cov, python2-pytest-cov): New
variables.
 2015-12-10 20:24:11 +02:00
Roel Janssen e522d84035 gnu: Add libconfig. 
* gnu/packages/textutils.scm (libconfig): New variable.
 2015-12-10 16:27:50 +01:00
Efraim Flashner b01bbbcf3d gnu: python-pytz: Update to 2015.7. 
* gnu/packages/python.scm (python-pytz): Update to 2015.7.
[source]: Change uri to pypi's location.
[home-page]: Change to new website.
[license]: Change to expat.
 2015-12-10 16:09:16 +02:00
Ricardo Wurmus 16414017f3 gnu: ghc-cryptonite: Update description. 
* gnu/packages/haskell.scm (ghc-cryptonite)[description]: Shorten overly
  technical package description.
 2015-12-10 14:40:18 +01:00
Ben Woodcroft e815c094f7 gnu: python-biopython, python2-biopython: Update to 1.66. 
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): Update to 1.66.
[source]: Use PyPi instead of biopython.org.
 2015-12-10 14:35:56 +01:00
Ricardo Wurmus 85538709f1 gnu: Add ghc-pandoc. 
* gnu/packages/haskell.scm (ghc-pandoc): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus ac2607a0ce gnu: Add ghc-http-client-tls. 
* gnu/packages/haskell.scm (ghc-http-client-tls): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 86dd2ce0b2 gnu: Add ghc-connection. 
* gnu/packages/haskell.scm (ghc-connection): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus dcc5cf1d41 gnu: Add ghc-socks. 
* gnu/packages/haskell.scm (ghc-socks): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 4f7f06e1a2 gnu: Add ghc-tls. 
* gnu/packages/haskell.scm (ghc-tls): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus f664cbb3bf gnu: Add ghc-x509-system. 
* gnu/packages/haskell.scm (ghc-x509-system): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 1c649948c9 gnu: Add ghc-x509-validation. 
* gnu/packages/haskell.scm (ghc-x509-validation): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 282f11420b gnu: Add ghc-x509-store. 
* gnu/packages/haskell.scm (ghc-x509-store): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus e24e053eda gnu: Add ghc-x509. 
* gnu/packages/haskell.scm (ghc-x509): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 4dc2deb920 gnu: Add ghc-memory. 
* gnu/packages/haskell.scm (ghc-memory): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 2763952b9c gnu: Add ghc-cryptonite. 
* gnu/packages/haskell.scm (ghc-cryptonite): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 76e2fa7529 gnu: Add ghc-tasty-kat. 
* gnu/packages/haskell.scm (ghc-tasty-kat): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 9d3c5d3859 gnu: Add ghc-asn1-parse. 
* gnu/packages/haskell.scm (ghc-asn1-parse): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 8078327341 gnu: Add ghc-asn1-encoding. 
* gnu/packages/haskell.scm (ghc-asn1-encoding): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus d4ce416a5c gnu: Add ghc-asn1-types. 
* gnu/packages/haskell.scm (ghc-asn1-types): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus ed8924c0d7 gnu: Add ghc-pem. 
* gnu/packages/haskell.scm (ghc-pem): New variable.
 2015-12-10 14:34:51 +01:00