512fc6db7b
gnu: libevent@2.0: Add fix from upstream.
...
This fix was cherry-picked by Mozilla from upstream libevent-2.1 to its
bundled copy of libevent-2.0.21 in mozilla-esr45.
* gnu/packages/patches/libevent-2.0-evbuffer-add-use-last-with-datap.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent-2.0)[source][patches]: Add it.
2017-03-19 15:54:58 -04:00
26e34e1e12
services: file-system-shepherd-service: Make it find the fsck programs.
...
Fixes <https://bugs.gnu.org/25917 >.
* gnu/services/base.scm (file-system-shepherd-service): Use
file-system-packages.
2017-03-19 18:49:30 +01:00
7c86c03109
gnu: guile-commonmark: Default to Guile 2.2.
...
* gnu/packages/guile.scm (guile-commonmark)[inputs]: Replace GUILE-2.0
with GUILE-2.2.
(guile2.0-commonmark): New variable.
(guile2.2-commonmark): Mark as deprecated.
(haunt)[propagated-inputs]: Use GUILE-COMMONMARK.
2017-03-19 18:14:22 +01:00
bdf1022dec
gnu: guile-reader: Default to Guile 2.2.
...
* gnu/packages/guile.scm (guile-reader)[inputs]: Change GUILE-2.0 to
GUILE-2.2.
(guile2.0-reader): New variable.
(guile2.2-reader): Mark as deprecated.
(haunt)[propagated-inputs]: Use GUILE-READER instead of
GUILE2.2-READER.
2017-03-19 18:14:22 +01:00
bd19f65a85
gnu: haunt: Default to Guile 2.2.
...
* gnu/packages/guile.scm (haunt)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
[propagated-inputs]: Replace GUILE-READER and GUILE-COMMONMARK with
their 2.2 variant.
(guile2.0-haunt): New variable.
(guile2.2-haunt): Mark as deprecated.
2017-03-19 18:14:22 +01:00
8f4acad71b
gnu: Add 'package-for-guile-2.0'.
...
* gnu/packages/guile.scm (guile-2.2-package-name): Rename to...
(guile-variant-package-name): ... this. Change to return a lambda.
(package-for-guile-2.2): Adjust accordingly.
(package-for-guile-2.0): New procedure.
2017-03-19 18:14:22 +01:00
f6396d862f
gnu: Rename "guile-next" to "guile".
...
* gnu/packages/guile.scm (guile-next): Rename to...
(guile-2.2): ... this. Update users.
[name]: Change to "guile".
[synopsis]: Remove.
[properties]: Remove 'upstream-name', 'ftp-server', and
'ftp-directory'.
* gnu/packages/bioinformatics.scm (rcas-web): Update accordingly.
* gnu/packages/tls.scm (gnutls/guile-2.2): Likewise.
* tests/guix-build.sh: Use 'guile@2.2' instead of 'guile-next'.
* doc/guix.texi (Package Transformation Options): Update examples that
referred to "guile-next".
2017-03-19 18:14:22 +01:00
8df672aad5
gnu: Add GNU Mach.
...
* gnu/packages/hurd.scm (gnumach): New variable.
Co-authored-by: Rene Saavedra <rennes@openmailbox.org>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-19 18:14:22 +01:00
f729a4d8b2
gnu: niftilib: Simplify build phases.
...
* gnu/packages/image.scm (niftilib)[arguments]: Use make-flags instead of
replacing "configure" phase; simplify "install" phase.
2017-03-19 14:26:33 +01:00
eba72e1716
gnu: apl: Update to 1.7.
...
* gnu/packages/apl.scm (apl): Update to 1.7.
[home-page]: Use https.
2017-03-18 21:28:20 +02:00
525acb6e82
gnu: guile-8sync: Update to 0.4.2.
...
* gnu/packages/guile.scm (guile-8sync): Update to 0.4.2.
2017-03-18 12:22:13 -05:00
57d0bdf8c6
gnu: guix: Don't ignore user's GUILE_LOAD_COMPILED_PATH.
...
* gnu/packages/package-management.scm (guix-0.12.0): Guile skips invalid .go
files since 2.0.12 so we don't need to override GUILE_LOAD_COMPILED_PATH to
prevent problems anymore.
2017-03-18 18:26:11 +01:00
7601b9f7ce
gnu: wine: Update to 2.4.
...
* gnu/packages/wine.scm (wine): Update to 2.4.
2017-03-18 17:26:02 +01:00
21122bd79e
gnu: Add niftilib.
...
* gnu/packages/image.scm (niftilib): New variable.
2017-03-18 15:25:59 +01:00
fdcb04afcc
doc: Clarify reference.
...
* doc/guix.texi (Invoking guix environment): Explicitly name
"guix environment".
2017-03-18 12:46:46 +01:00
da31b9c7f6
doc: Fix examples.
...
To "spawns a Guile REPL", --ad-hoc is required.
* doc/guix.texi (Invoking guix environment): Add "--ad-hoc" to
container examples.
2017-03-18 12:46:30 +01:00
d54db52e7f
bug#26152: [PATCH] gnu: limnoria: Update to 20170110.
...
* gnu/packages/irc.scm (limnoria): Update to 20170110.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-03-18 11:51:21 +01:00
7208995426
file-systems: Factorize file-system-packages.
...
* gnu/system/linux-initrd.scm (base-initrd): Move helper-packages body to ...
* gnu/system/file-systems.scm (file-system-packages): ... here. New variable.
Also export it.
2017-03-18 10:38:51 +01:00
84aac61c81
gnu: rustc: Fix process test.
...
* gnu/packages/rust.scm (rustc)[arguments]: Rename 'patch-lockfile-test
to 'patch-tests. Add another substitution.
2017-03-18 10:37:02 +01:00
6d5f63b690
gnu: Add maxflow.
...
* gnu/packages/maths.scm (maxflow): New variable.
2017-03-18 10:31:54 +01:00
a53d6719bc
gnu: Add itpp.
...
* gnu/packages/maths.scm (itpp): New variable.
2017-03-18 10:31:50 +01:00
b6bd9a79d4
gnu: emacs-slime: Update to 2.19.
...
* gnu/packages/emacs.scm (emacs-slime): Update to 2.19.
2017-03-18 01:49:38 +01:00
55f7a27cee
gnu: ocaml-qtest: Update to 2.5.
...
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.5.
2017-03-18 09:52:29 +10:00
7f608a9b45
doc: Make "Application Setup" slightly more visible.
...
Suggested by Arne Babenhauserheide.
* doc/guix.texi (Binary Installation): Make the "Application Setup"
reference an 8th item in the list.
2017-03-18 00:39:50 +01:00
4fd06a4dd1
http-client: Avoid name clash with 'open-connection-for-uri' in 2.2.0.
...
* guix/build/download.scm (open-connection-for-uri): Add note about
same-named binding in Guile 2.2.0.
* guix/http-client.scm: Use 'guix:open-connection-for-uri' for the
procedure coming from (guix build download).
* guix/scripts/lint.scm: Likewise.
* guix/scripts/substitute.scm: Likewise.
2017-03-18 00:39:50 +01:00
36626c556e
build: Require Guile >= 2.0.9.
...
* configure.ac: Bump requirement to 2.0.9.
* doc/guix.texi (Requirements): Adjust accordingly.
* README (Requirements): Likewise.
* build-aux/download.scm: Remove workaround for <http://bugs.gnu.org/13095 >.
* guix/build/download.scm: Likewise.
(http-fetch)[post-2.0.7?]: Remove. Remove conditional code for not
POST-2.0.7?.
* guix/http-client.scm: Remove workaround for <http://bugs.gnu.org/13095 >.
(http-fetch)[post-2.0.7?]: Remove. Remove conditional code for not
POST-2.0.7?.
* guix/serialization.scm (read-latin1-string): Remove mention of 2.0.9.
* tests/nar.scm: Use (ice-9 control).
(let/ec): Remove.
2017-03-18 00:39:49 +01:00
5461115e8f
pack: Add '--target'.
...
* guix/scripts/pack.scm (self-contained-tarball): Add #:target.
(docker-image): Add #:target.
[build]: Pass it to 'build-docker-image'.
(%options, show-help): Add '--target'.
(guix-pack): Pass TARGET to 'profile-derivation' and to 'build-image'.
* guix/docker.scm (build-docker-image): Add #:system parameter and honor it.
* doc/guix.texi (Invoking guix pack): Document '--target'.
(Additional Build Options): Refer to the Autoconf manual instead of the
obsolete 'configure.info' for cross-compilation.
2017-03-18 00:38:41 +01:00
176febe377
profiles: Packages in a profile can be cross-compiled.
...
* guix/profiles.scm (profile-derivation): Add #:target parameter; pass
it to 'gexp->derivation'.
* tests/profiles.scm ("profile-derivation, cross-compilation"): New test.
2017-03-17 23:25:53 +01:00
48b444304e
pack: Move absolute file name to <compressor>.
...
* guix/scripts/pack.scm (<compressor>)[package]: Remove.
[command]: Document as being a gexp with an absolute file name.
(%compressors): Adjust accordingly.
(self-contained-tarball): Simplify PATH expression. Move 'string-join'
for the compressor command on the build side.
(docker-image): Simplify PATH expression.
* tests/pack.scm (%gzip-compressor): Adjust accordingly.
2017-03-17 23:25:53 +01:00
7c78beb33c
gnu: libbluray: Update to 1.0.0.
...
* gnu/packages/video.scm (libbluray): Update to 1.0.0.
2017-03-17 20:41:16 +01:00
715dd13d8e
gnu: libx264: Update to 20170316-2245.
...
* gnu/packages/video.scm (libx264): Update to 20170316-2245.
2017-03-17 20:41:15 +01:00
2a047d59e0
gnu: libwebp: Update to 0.6.0.
...
* gnu/packages/image.scm (libwebp): Update to 0.6.0.
[source]: Remove patch.
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-17 20:41:15 +01:00
cbef2796ed
gnu: ninja: Update to 1.7.2.
...
* gnu/packages/ninja.scm (ninja): Update to 1.7.2.
[source]: Remove patch.
* gnu/packages/patches/ninja-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-17 20:41:15 +01:00
039601e097
gnu: btrfs-progs: Use @dfn in description.
...
* gnu/packages/linux.scm (btrfs-progs)[description]: Use @dfn.
2017-03-17 20:39:58 +01:00
0d3ddd490b
gnu: btrfs-progs: Update to 4.10.1.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.1.
2017-03-17 20:39:58 +01:00
4ed64c534a
build/cargo-build-system: Make cargo-build-system install working packages.
...
* guix/build/cargo-build-system.scm (configure): Remove proprietary
dependencies. Add rust dependencies and configure Cargo to find them.
(build): Also build libraries, not just applications.
(file-sha256): New variable.
(generate-checksums): New variable. Export it.
(touch): New variable.
(install): Generate checksums so Cargo accepts the package.
2017-03-17 16:48:09 +01:00
25fb58a3be
build-system/cargo (cargo-build): Add cargo-build-flags, remove configure-flags.
...
* guix/build-system/cargo.scm (cargo-build): Add cargo-build-flags,
remove configure-flags.
2017-03-17 16:48:08 +01:00
893bc3f402
gnu: cargo: Use upstream cargo.
...
* gnu/packages/rust.scm (cargo): Use upstream cargo.
2017-03-17 16:48:08 +01:00
b0dcb529af
gnu: rust: Update to 1.15.0.
...
* gnu/packages/rust.scm (%rust-bootstrap-binaries-version): Update to 1.14.0.
(%rust-bootstrap-binaries): Update to 1.14.0.
(rustc): Update to 1.15.0.
[arguments]: Pass "--disable-rustbuild" to configure.
2017-03-17 16:48:06 +01:00
8f98581613
gnu: libpng-apng: Remove unnecessary call to libtool.
...
* gnu/packages/image.scm (libpng-apng)[phases]: Remove it.
2017-03-17 11:36:27 -04:00
114a325e8f
gnu: Add libpng-apng.
...
* gnu/packages/image.scm (libpng-apng): New variable.
Co-authored-by: Kei Kebreau <kei@openmailbox.org>
2017-03-17 11:25:15 -04:00
0a3063d640
gnu: Add ocaml-mcl.
...
* gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
2017-03-17 21:43:27 +10:00
ba1be533ad
gnu: Add ocaml-gsl.
...
* gnu/packages/maths.scm (ocaml-gsl): New variable.
2017-03-17 21:43:25 +10:00
91df9eaefa
gnu: Add ocaml-csv.
...
* gnu/packages/ocaml.scm (ocaml-csv): New variable.
2017-03-17 21:43:13 +10:00
0c4dbdc23e
gnu: Add ocaml-sqlite3.
...
* gnu/packages/ocaml.scm (ocaml-sqlite3): New variable.
2017-03-17 21:19:23 +10:00
ef71ed8ffa
gnu: snakemake: Update to 3.11.2.
...
* gnu/packages/python.scm (snakemake): Update to 3.11.2.
2017-03-17 10:14:03 +01:00
60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems.
...
Fixes <https://bugs.gnu.org/25598 >.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
2017-03-17 10:14:02 +01:00
2d7c4ae3ee
gnu: r: Rename to r-minimal.
...
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
2017-03-17 10:14:02 +01:00
f1fe5283c9
gnu: Add r-with-recommended-packages.
...
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
2017-03-17 10:14:02 +01:00
aeb64f3cb2
gnu: r: Do not build recommended packages.
...
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
Mark H Weaver