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Author SHA1 Message Date
Tobias Geerinckx-Rice d49bdbca5c
gnu: perl-dbd-sqlite: Update to 1.62. 
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.62.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 49596a5413
gnu: perl-dbd-mysql: Update to 4.050. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.050.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 2f813be342
gnu: perl-sql-abstract: Update to 1.86. 
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.86.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 55f4282e0c
gnu: guile-colorized: Move project home. 
* gnu/packages/guile-xyz.scm (guile-colorized)[source, home-page]: Update.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 1340ce2899
gnu: guile-colorized: Don't use unstable tarball. 
* gnu/packages/guile-xyz.scm (guile-colorized)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-12 02:22:33 +01:00
Brian Leung 1bc24bbf00
gnu: Add emacs-debpaste. 
* gnu/packages/emacs-xyz.scm (emacs-debpaste): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-11 23:12:26 +01:00
Brian Leung 6f93b525d3
gnu: Add emacs-xml-rpc. 
* gnu/packages/emacs-xyz.scm (emacs-xml-rpc): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-11 23:12:26 +01:00
Ludovic Courtès bfc9c33930
packages: Add the channel .go files to the search path. 
Until now %LOAD-COMPILED-PATH would wrongfully contain:

  CHANNEL/share/guile/site/X.Y

for each channel, thereby ignoring all the .go files of channels.  This
fixes it so that %LOAD-COMPILED-PATH instead contains:

  CHANNEL/lib/guile/X.Y/site-ccache

* guix/describe.scm (current-channel-entries): New procedure.
(package-path-entries): Change to return the %LOAD-COMPILED-PATH entries
as a second value.
* gnu/packages.scm (%package-module-path): Expect two values from
'package-path-entries' and augment %LOAD-COMPILED-PATH accordingly.
 2019-03-11 23:12:26 +01:00
Ludovic Courtès 082c648d28
services: mate-desktop: Deprecate the 'mate-desktop-service' procedure. 
* gnu/services/desktop.scm (mate-desktop-service): Deprecate.
* doc/guix.texi (Desktop Services): Document 'mate-desktop-service-type'
and 'mate-desktop-configuration'.  Fix spelling of "Enlightenment".
 2019-03-11 23:12:26 +01:00
Ludovic Courtès 984a61624c
services: mate-desktop: Add default value. 
* gnu/services/desktop.scm (mate-desktop-service-type)[default-value]:
New field.
 2019-03-11 23:12:26 +01:00
Rutger Helling 7959ccac3f
gnu: swaylock: Fix indentation. 
* gnu/packages/wm.scm (swaylock): Fix indentation.
 2019-03-11 20:31:30 +01:00
Rutger Helling b0805973cd
gnu: Add swaylock. 
* gnu/packages/wm.scm (swaylock): New variable.
 2019-03-11 20:28:41 +01:00
Rutger Helling 06ae5efcf3
gnu: Add swayidle. 
* gnu/packages/wm.scm (swayidle): New variable.
 2019-03-11 20:28:41 +01:00
Rutger Helling 2ff844f090
gnu: Add sway. 
* gnu/packages/wm.scm (sway): New variable.
 2019-03-11 20:28:41 +01:00
Rutger Helling eea969cf8d
gnu: Add wlroots. 
* gnu/packages/wm.scm (wlroots): New variable.
 2019-03-11 20:28:41 +01:00
Pierre Neidhardt 684626763f
gnu: emacs-magit: Fix perl path in dedicated variable. 
* gnu/packages/emacs-xyz.scm (emacs-magit)[arguments]: Do it.
 2019-03-11 19:01:49 +01:00
Pierre Neidhardt 842e66c573
gnu: Add emacs-lorem-ipsum. 
* gnu/packages/emacs-xyz.scm (emacs-lorem-ipsum): New variable.
 2019-03-11 18:46:25 +01:00
Oleg Pykhalov 34e3d028b9
gnu: emacs-json-reformat: Fix test. 
This patch deletes a test which tries to compare JSON objects order.

* gnu/packages/emacs-xyz.scm (emacs-json-reformat): Delete
'json-reformat-test:json-reformat-region' test.
 2019-03-11 19:52:39 +03:00
Ricardo Wurmus 4948c23677
gnu: r-with-tests: Update to 3.5.3. 
* gnu/packages/statistics.scm (r-with-tests): Update to 3.5.3.
 2019-03-11 15:25:27 +01:00
Tobias Geerinckx-Rice e445bd1607
gnu: s6-linux-utils: Update to 2.5.0.1. 
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.0.1.
 2019-03-11 13:25:15 +01:00
Tobias Geerinckx-Rice 8dc458bb18
gnu: s6-linux-init: Update to 0.4.0.1. 
* gnu/packages/skarnet.scm (s6-linux-init): Update to 0.4.0.1.
 2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice b673d2d793
gnu: s6-portable-utils: Update to 2.2.1.3. 
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.1.3.
 2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice 0953b09aa8
gnu: s6-rc: Update to 0.5.0.0. 
* gnu/packages/skarnet.scm (s6-rc): Update to 0.5.0.0.
 2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice 8722fd43d4
gnu: s6-networking: Update to 2.3.0.4. 
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.0.4.
 2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice ce3262e9a3
gnu: s6-dns: Update to 2.3.0.2. 
* gnu/packages/skarnet.scm (s6-dns): Update to 2.3.0.2.
 2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice 6954594d5c
gnu: s6: Update to 2.8.0.0. 
* gnu/packages/skarnet.scm (s6): Update to 2.8.0.0.
 2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice 5c9bf737c4
gnu: execline: Update to 2.5.1.0. 
* gnu/packages/skarnet.scm (execline): Update to 2.5.1.0.
 2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice a699a81b84
gnu: skalibs: Update to 2.8.0.1. 
* gnu/packages/skarnet.scm (skalibs): Update to 2.8.0.1.
 2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice 5e5bd81843
gnu: picocom: Fix description. 
* gnu/packages/terminals.scm (picocom)[synopsis]: Shorten.
[description]: Properly introduce.
 2019-03-11 13:25:12 +01:00
Tobias Geerinckx-Rice 33238b5520
gnu: picocom: Update to 3.1. 
* gnu/packages/terminals.scm (picocom): Update to 3.1.
 2019-03-11 13:25:12 +01:00
Tobias Geerinckx-Rice 130c12c9b9
gnu: perl-image-exiftool: Update to 11.31. 
* gnu/packages/photo.scm (perl-image-exiftool): Update to 11.31.
 2019-03-11 13:25:12 +01:00
Tobias Geerinckx-Rice 0234f4af27
gnu: perl-image-exiftool: Add upstream URL. 
* gnu/packages/photo.scm (perl-image-exiftool)[source]: Also download
from the home page.
 2019-03-11 13:25:11 +01:00
Mark H Weaver 3edd7a3f4c
gnu: linux-libre: Update to 5.0.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.1.
(%linux-libre-hash): Update hash.
 2019-03-11 07:14:58 -04:00
Mark H Weaver 32ede5bbf9
gnu: linux-libre@4.19: Update to 4.19.28. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.28.
(%linux-libre-4.19-hash): Update hash.
 2019-03-11 07:14:01 -04:00
Efraim Flashner 2206f23679
gnu: Add eternalterminal. 
* gnu/packages/terminals.scm (eternalterminal): New variable.
 2019-03-11 10:30:58 +02:00
Efraim Flashner a5c8460a6d
gnu: crawl: Build without SSE only on some architecures. 
This is a follow-up to b89284407f.

* gnu/packages/games.scm (crawl)[arguments]: Remove custom 'patch-flags
phase, add make-flag on non-x86* architectures to build without SSE.
 2019-03-11 10:06:29 +02:00
Tobias Geerinckx-Rice 93a72fa7c9
gnu: xvid: Update to 1.3.5. 
* gnu/packages/video.scm (xvid): Update to 1.3.5.
 2019-03-11 02:08:04 +01:00
Tobias Geerinckx-Rice d05c14dfc9
gnu: python-acme, certbot: Update to 0.32.0. 
* gnu/packages/tls.scm (python-acme): Update to 0.32.0.
(certbot)[source]: Update hash.
[native-inputs]: Replace python-nose with python-pytest.
[propagated-inputs]: Add python-cryptography.
 2019-03-11 02:08:04 +01:00
Tobias Geerinckx-Rice 4d34fe4681
gnu: avidemux: Update to 2.7.2. 
* gnu/packages/video.scm (avidemux): Update to 2.7.2.
[arguments]: Update version of included ffmpeg.
 2019-03-11 02:08:04 +01:00
Tobias Geerinckx-Rice 642de36b9e
gnu: avidemux: Factorise ffmpeg version. 
* gnu/packages/video.scm (avidemux)[arguments]: Move oft-repeated
hard-coded ffmpeg version number to a single let-bound variable.
 2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice 7d3ac6c08e
gnu: avidemux: Don't use NAME in source URI. 
* gnu/packages/video.scm (avidemux)[source]: Hard-code NAME.
 2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice 129294e748
gnu: youtube-dl: Update to 2019.03.09. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.03.09.
 2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice 585be42f46
gnu: texmaker: Update to 5.0.3. 
* gnu/packages/tex.scm (texmaker): Update to 5.0.3.
 2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice dbfb24824b
gnu: stunnel: Update to 5.50. 
* gnu/packages/web.scm (stunnel): Update to 5.50.
 2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice a9644c5a49
gnu: you-get: Update to 0.4.1270. 
* gnu/packages/video.scm (you-get): Update to 0.4.1270.
 2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice 266cd19eb9
gnu: nginx-documentation: Update to 2019-03-01-2345-7ef11708457e. 
* gnu/packages/web.scm (nginx-documentation): Update to 2019-03-01-2345-7ef11708457e.
[arguments]: Simplify substitution.
 2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice fd46742dd2
gnu: nginx: Update to 1.15.9. 
* gnu/packages/web.scm (nginx): Update to 1.15.9.
 2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice 0330d6b2bf
gnu: xf86-video-ati: Update to 19.0.0. 
* gnu/packages/xorg.scm (xf86-video-ati): Update to 19.0.0.
[source]: Re-indent.
 2019-03-11 02:08:01 +01:00
Tobias Geerinckx-Rice 77ad8ec4fc
gnu: xf86-video-amdgpu: Update to 19.0.0. 
* gnu/packages/xorg.scm (xf86-video-amdgpu): Update to 19.0.0.
[source]: Re-indent.
 2019-03-11 02:08:01 +01:00
Tobias Geerinckx-Rice c170080689
gnu: console-setup: Update to 1.190. 
* gnu/packages/xorg.scm (console-setup): Update to 1.190.
 2019-03-11 02:08:01 +01:00
Tobias Geerinckx-Rice 0189045904
gnu: snd: Update to 19.2. 
* gnu/packages/audio.scm (snd): Update to 19.2.
 2019-03-11 02:08:00 +01:00
Ludovic Courtès 8b3ad455be
services: guix: Pre-compute the default ACL. 
This makes the first boot slightly faster.

* gnu/services/base.scm (not-config?): New procedure.
(hydra-key-authorization): Rewrite to pre-compute the default ACL, and
pre-compute it using (guix pki) directly.
 2019-03-10 23:41:33 +01:00
Ludovic Courtès 309d87c3aa
services: guix: Allocate build user UIDs in the system range. 
Until now we were allocating the UIDs of build users above 30000, which
is in "normal" user UID range.  This static allocation was unnecessary,
so this change lets the system allocate UIDs in the system range (below
1000).

* gnu/services/base.scm (guix-build-accounts): Remove #:first-uid, and
remove 'uid' field from 'user-account'.
 2019-03-10 23:41:33 +01:00
Ludovic Courtès 45fef894eb
gnu: gnome-shell: Avoid top-level reference to inkscape. 
Fixes <https://bugs.gnu.org/34806>.
Reported by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/gnome.scm (gnome-shell)[source](snippet): Remove
reference to INKSCAPE.  Instead, simply copy the SVG file to
data/theme.
[arguments]: Add 'convert-logo-to-png' phase.
[native-inputs]: Add INKSCAPE.
 2019-03-10 23:41:33 +01:00
Tobias Geerinckx-Rice 5ae5932b2f
gnu: ansible: Update to 2.7.8 [fixes CVE-2019-3828]. 
* gnu/packages/admin.scm (ansible): Update to 2.7.8.
 2019-03-10 23:00:08 +01:00
Marius Bakke 7fda7b8fad
gnu: pugixml: Build as shared library. 
* gnu/packages/patches/pugixml-versioned-libdir.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/xml.scm (pugixml)[source](patches): New field.
[arguments]: Instruct the build system to create a shared rather than static
library.
[native-inputs]: Add PKG-CONFIG.
 2019-03-10 21:44:25 +01:00
Marius Bakke e2bdf60982
gnu: FileZilla: Update to 3.41.1. 
* gnu/packages/ftp.scm (filezilla): Update to 3.41.1.
 2019-03-10 21:44:25 +01:00
Marius Bakke 6324727770
gnu: pugixml is a regular input. 
* gnu/packages/emulators.scm (mame)[native-inputs]: Move PUGIXML ...
[inputs]: ... here.
* gnu/packages/ftp.scm (filezilla)[native-inputs, inputs]: Likewise.
 2019-03-10 21:44:25 +01:00
Oleg Pykhalov e44de1d2fb
services: zabbix-front-end: Show location in messages. 
* gnu/services/monitoring.scm (zabbix-front-end-config): Show location in
messages.
 2019-03-10 21:32:38 +03:00
Oleg Pykhalov d132d9f96b
services: configuration: Add '%location'. 
* gnu/services/configuration.scm (define-configuration): Add '%location'.
 2019-03-10 21:32:38 +03:00
Marius Bakke 41ce92501b
gnu: xfd: Update to 1.1.3. 
* gnu/packages/xorg.scm (xfd): Update to 1.1.3.
 2019-03-10 18:30:51 +01:00
Marius Bakke 06e3ed5d19
gnu: xprop: Update to 1.2.4. 
* gnu/packages/xorg.scm (xprop): Update to 1.2.4.
 2019-03-10 18:30:51 +01:00
Marius Bakke df8dbfb30b
gnu: notmuch: Update to 0.28.3. 
* gnu/packages/mail.scm (notmuch): Update to 0.28.3.
 2019-03-10 18:30:51 +01:00
Marius Bakke 2c0cf9eec7
gnu: xapian: Update to 1.4.11. 
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.11.
 2019-03-10 18:30:51 +01:00
Marius Bakke 511930c294
gnu: libmspack: Update to 0.10.1. 
* gnu/packages/compression.scm (libmspack): Update to 0.10.1.
 2019-03-10 18:30:50 +01:00
Marius Bakke 755226e9c2
gnu: python-dask: Update to 1.1.4. 
* gnu/packages/python-xyz.scm (python-dask): Update to 1.1.4.
 2019-03-10 18:30:50 +01:00
Marius Bakke f1fff66be5
gnu: elogind: Update to 239.4. 
* gnu/packages/freedesktop.scm (elogind): Update to 239.4.
 2019-03-10 18:30:50 +01:00
Tobias Geerinckx-Rice 6845ab5204
gnu: Import (gnu packages image) in (gnu packages scanner). 
This is a follow-up to commit 10bd2889d2.

* gnu/packages/scanner.scm: #:use-module (gnu packages image).
 2019-03-10 17:12:16 +01:00
Tobias Geerinckx-Rice 10bd2889d2
gnu: sane-backends: Support PNG scanimage output. 
* gnu/packages/scanner.scm (sane-backends)[inputs]: Add libpng.
 2019-03-10 16:33:55 +01:00
Ricardo Wurmus ca32afacf9
gnu: Add btanks. 
* gnu/packages/games.scm (btanks): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus d7764d42e4
gnu: Add libsmpeg-with-sdl1. 
* gnu/packages/video.scm (libsmpeg-with-sdl1): New variable.
(libsmpeg)[version]: Change to 0.4.5-401.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus 8ada024ba6
gnu: Add 4dtris. 
* gnu/packages/games.scm (4dtris): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus c06709b8a4
gnu: Add slingshot. 
* gnu/packages/games.scm (slingshot): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus 05487ed8e6
gnu: scons: Update to 3.0.4. 
* gnu/packages/python-xyz.scm (scons): Update to 3.0.4.
[arguments]: Remove second instance of "imp.load_module" (bug 34236).
 2019-03-10 14:04:28 +01:00
Tobias Geerinckx-Rice 4eb57ca883
gnu: Add opensmtpd-next. 
* gnu/packages/mail.scm (opensmtpd-next): New public variable.
 2019-03-10 13:37:18 +01:00
Tobias Geerinckx-Rice 380384e419
gnu: ibus: Update Unicode data to 12.0.0. 
* gnu/packages/ibus.scm (ibus)[native-inputs]: Use versioned URLs for
Unicode data and update hashes.
 2019-03-10 13:37:18 +01:00
Pierre Neidhardt 2b613a1a5d
gnu: hyperledger-fabric: Fix description, set supported system and parallel build. 
* gnu/packages/hyperledger.scm (hyperledger-fabric)[description]: Rephrase
into something less marketing-ish.
[arguments]: Build with multiple jobs.
[supported-systems]: Support x86_64-linux only.
 2019-03-09 12:30:24 +01:00
Ricardo Wurmus 7d4cab7473
gnu: Add openfst. 
* gnu/packages/machine-learning.scm (openfst): New variable.
 2019-03-09 10:43:37 +01:00
Pierre Neidhardt 983550692d
gnu: Add hyperledger-fabric. 
* gnu/local.mk (hyperledger): New variable.
 2019-03-09 10:15:46 +01:00
Tobias Geerinckx-Rice 373abfb398
gnu: lynis: Update to 2.7.2. 
* gnu/packages/admin.scm (lynis): Update to 2.7.2.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 7b957a3344
gnu: youtube-viewer: Update to "3.5.4. 
* gnu/packages/video.scm (youtube-viewer): Update to "3.5.4.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 37fc44eab9
gnu: dovecot: Avoid unnecessary patching. 
* gnu/packages/mail.scm (dovecot)[arguments]: Replace ‘pre-configure’
patching with custom ‘make install sysconfdir=…’.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice f762e49f28
gnu: dovecot: Indent arguments. 
* gnu/packages/mail.scm (dovecot)[arguments]: C-M-q and tuck left.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 7969751f54
gnu: i3lock-color: Update to 2.12.c. 
* gnu/packages/wm.scm (i3lock-color): Update to 2.12.c.
[inputs]: Add xcb-util-xrm.
 2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice f45cc966ba
gnu: i3lock-color: Don't use unstable tarball. 
* gnu/packages/wm.scm (i3lock-color)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice a48db08afe
gnu: i3lock-fancy: Don't use unstable tarball. 
* gnu/packages/wm.scm (i3lock-fancy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-09 02:33:30 +01:00
Ludovic Courtès d429878daf
activation: Shared system home directories are now 555 and root-owned. 
Fixes <https://bugs.gnu.org/34788>.
Reported by Jack Hill <jackhill@jackhill.us>.

Regression introduced by the combination of
8bb76f3d44 and
0ae735bcc8ff7fdc89d67b492bdee9091ee19e86: /var/empty would be 700 and
owned by one of the system accounts (thus inaccessible to others), and
/var/run/dbus would be 700 as well, thereby preventing D-Bus clients
from connecting to the daemon.

* gnu/build/activation.scm (duplicates): New procedure.
(activate-users+groups)[system-accounts]: New variable.
Use it.  Make shared system account home directories #o555 and
root-owned.
* gnu/services/dbus.scm (dbus-activation): Make /var/run/dbus #o755.
* gnu/tests/base.scm (run-basic-test): Test the ownership and
permissions of /var/empty.
 2019-03-08 23:21:59 +01:00
Ricardo Wurmus 74c2339fff
gnu: Add java-eclipse-jdt-compiler-apt. 
* gnu/packages/java.scm (java-eclipse-jdt-compiler-apt): New variable.
 2019-03-08 23:18:56 +01:00
Ricardo Wurmus 8b6acb1f20
gnu: blast+: Update to 2.7.1. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1.
[inputs]: Add lmdb.
[source]: Remove obsolete patch.
* gnu/package/patches/blast+-fix-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-03-08 23:00:07 +01:00
Ricardo Wurmus f87dcb4d75
gnu: Add texlive-latex-pdfx. 
* gnu/packages/tex.scm (texlive-latex-pdfx): New variable.
 2019-03-08 21:49:25 +01:00
Ricardo Wurmus cafd4d387b
gnu: Add texlive-latex-xmpincl. 
* gnu/packages/tex.scm (texlive-latex-xmpincl): New variable.
 2019-03-08 21:48:19 +01:00
Ricardo Wurmus 847768b9cc
gnu: Add translate2geda. 
* gnu/packages/engineering.scm (translate2geda): New variable.
 2019-03-08 21:45:29 +01:00
Ricardo Wurmus a734da8675
gnu: Add rkrlv2. 
* gnu/packages/music.scm (rkrlv2): New variable.
 2019-03-08 21:02:49 +01:00
Danny Milosavljevic eb6ef893e8
gnu: fc-host-tools: Update to 10. 
* gnu/packages/embedded.scm (fc-host-tools): Update to 10.
[arguments]<:make-flags>: Change INSTBIN to INSTALL_PREFIX.
 2019-03-08 19:33:04 +01:00
Efraim Flashner 606c198788
gnu: crawl: Find all the included headers. 
* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
change the path for some headers.
 2019-03-08 17:22:29 +02:00
Efraim Flashner b89284407f
gnu: crawl: Don't assume system architecture. 
This allows crawl to build on non-Intel architectures.

* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
remove x86* specific CFLAGS.
 2019-03-08 17:22:29 +02:00
Efraim Flashner fc7d6bc60d
gnu: crawl: Build with python3-wrapper. 
* gnu/packages/games.scm (crawl)[native-inputs replace python with
python-wrapper.
[arguments]: Remove custom 'patch-python phase.
 2019-03-08 17:22:26 +02:00
Vagrant Cascadian fb0aeaacea
gnu: u-boot: Remove openssl input. 
Fixes <https://bugs.gnu.org/34717>.

* gnu/packages/bootloaders (u-boot): Remove openssl from native-inputs.
  (u-boot-tools): Disable FIT_SIGNATURES in tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-08 12:31:37 +01:00
Rutger Helling 75f0bda71a
gnu: flatpak: Add more dependencies. 
* gnu/packages/package-management.scm (flatpak)[propagated-inputs]: Add
"glib-networking", "gnupg" and "gsettings-desktop-schemas".
 2019-03-08 11:50:56 +01:00
Ricardo Wurmus daeb3cd98c
gnu: r-genelendatabase: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.18.0.
 2019-03-08 09:30:00 +01:00
Ricardo Wurmus 183b6575e7
gnu: r-mzr: Update to 2.16.2. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.2.
[inputs]: Replace "boost" with "boost-for-mysql".
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 6453d7aecc
gnu: r-gviz: Update to 1.26.5. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.5.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 101dcc29d3
gnu: r-ensembldb: Update to 2.6.7. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.7.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus d3713237c5
gnu: r-annotationhub: Update to 2.14.4. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.4.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 53e7f028ed
gnu: r-rhtslib: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.1.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus d86b9eca56
gnu: r-genomicfeatures: Update to 1.34.4. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.4.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus d493043daf
gnu: r-rtracklayer: Update to 1.42.2. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.2.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 57f40dc220
gnu: r-rsamtools: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.1.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus 58209b1e21
gnu: r-biocparallel: Update to 1.16.6. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.6.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus cd43ae3fd6
gnu: r-variantannotation: Update to 1.28.11. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.11.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus fff11bccc6
gnu: r-genomeinfodb: Update to 1.18.2. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.2.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus 8972989e10
gnu: r-dexseq: Update to 1.28.2. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.2.
 2019-03-08 09:14:00 +01:00
Tobias Geerinckx-Rice 792d3ed7eb
gnu: man-pages: Update to 5.00. 
* gnu/packages/man.scm (man-pages): Update to 5.00.
[source]: Re-format.
 2019-03-08 01:35:42 +01:00
Tobias Geerinckx-Rice 13b1fb5c92
gnu: dovecot: Update to 2.3.5. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.5.
[arguments]: Patch more tests in ‘patch-file-names’ phase, renamed from
‘patch-other-file-names’.
 2019-03-08 01:34:41 +01:00
Tobias Geerinckx-Rice 2fa1a3a808
gnu: dovecot: Don't use NAME in source URI. 
* gnu/packages/mail.scm (dovecot)[source]: Hard-code NAME.
 2019-03-08 01:34:40 +01:00
Ricardo Wurmus 933dad9156
gnu: Add mruby. 
* gnu/packages/ruby.scm (mruby): New variable.
 2019-03-08 00:07:45 +01:00
Ricardo Wurmus 20662a3020
gnu: r-ggmap: Update to 3.0.0. 
* gnu/packages/cran.scm (r-ggmap): Update to 3.0.0.
[propagated-inputs]: Add r-bitops, r-dplyr, r-glue, r-httr, r-magrittr,
r-purrr, r-stringr, r-tibble, and r-tidyr; remove r-geosphere, r-mapproj,
r-proto, and r-reshape2.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus 8f37f53837
gnu: r-readxl: Update to 1.3.0. 
* gnu/packages/cran.scm (r-readxl): Update to 1.3.0.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus f544ab3379
gnu: r-sys: Update to 3.0. 
* gnu/packages/cran.scm (r-sys): Update to 3.0.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus 790db519f4
gnu: r-servr: Update to 0.13. 
* gnu/packages/cran.scm (r-servr): Update to 0.13.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus e89d54278d
gnu: r-flextable: Update to 0.5.1. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.1.
[propagated-inputs]: Add r-data-table, r-magick, and r-rlang; remove r-r6 and
r-stringr.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus e190d9af6c
gnu: r-proxy: Update to 0.4-23. 
* gnu/packages/cran.scm (r-proxy): Update to 0.4-23.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus bef78244de
gnu: r-haven: Update to 2.1.0. 
* gnu/packages/cran.scm (r-haven): Update to 2.1.0.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 59c513422c
gnu: r-emdbook: Update to 1.3.11. 
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.11.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 937e15571c
gnu: r-rmysql: Update to 0.10.17. 
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.17.
[native-inputs]: Remove pkg-config.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 2170a36c3b
gnu: r-gower: Update to 0.2.0. 
* gnu/packages/cran.scm (r-gower): Update to 0.2.0.
[native-inputs]: Remove r-knitr.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 6e4a9b8365
gnu: r-ggsignif: Update to 0.5.0. 
* gnu/packages/cran.scm (r-ggsignif): Update to 0.5.0.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 532b359865
gnu: r-jomo: Update to 2.6-7. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-7.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus d2cd541cc7
gnu: r-mice: Update to 3.4.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.4.0.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus 22777c8657
gnu: r-xfun: Update to 0.5. 
* gnu/packages/cran.scm (r-xfun): Update to 0.5.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus 87bb1b8c9e
gnu: r-metap: Update to 1.1. 
* gnu/packages/cran.scm (r-metap): Update to 1.1.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus d8787b3387
gnu: r-ifultools: Update to 2.0-5. 
* gnu/packages/cran.scm (r-ifultools): Update to 2.0-5.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus cb40b6eb9b
gnu: r-radiant-data: Update to 0.9.9. 
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.9.
[propagated-inputs]: Add r-stringi; remove r-summarytools.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus 00fb320392
gnu: r-later: Update to 0.8.0. 
* gnu/packages/cran.scm (r-later): Update to 0.8.0.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus 8b2c80b8a3
gnu: r-vim: Update to 4.8.0. 
* gnu/packages/cran.scm (r-vim): Update to 4.8.0.
[propagated-inputs]: Add r-ranger.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus b9b1041324
gnu: r-fnn: Update to 1.1.3. 
* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus ea010aa31e
gnu: r-arules: Update to 1.6-3. 
* gnu/packages/cran.scm (r-arules): Update to 1.6-3.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus f5ce1dcce2
gnu: r-zip: Update to 2.0.0. 
* gnu/packages/cran.scm (r-zip): Update to 2.0.0.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus bbe9421174
gnu: r-maptools: Update to 0.9-5. 
* gnu/packages/cran.scm (r-maptools): Update to 0.9-5.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus d3f22f0aea
gnu: r-reticulate: Update to 1.11.1. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.11.1.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus fd1a17a522
gnu: r-officer: Update to 0.3.3. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.3.
[propagated-inputs]: Add r-rlang.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus 7754557090
gnu: r-prediction: Update to 0.3.6.2. 
* gnu/packages/cran.scm (r-prediction): Update to 0.3.6.2.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus 3d5bcae0c2
gnu: r-abjutils: Update to 0.2.3. 
* gnu/packages/cran.scm (r-abjutils): Update to 0.2.3.
[propagated-inputs]: Add r-furrr, r-future, r-readr, and r-rlang; remove
r-plyr.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus 1007b1b6d2
gnu: r-slam: Update to 0.1-45. 
* gnu/packages/cran.scm (r-slam): Update to 0.1-45.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus a431c38166
gnu: r-hash: Update to 2.2.6.1. 
* gnu/packages/cran.scm (r-hash): Update to 2.2.6.1.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus a6a87db8ce
gnu: r-dvmisc: Update to 1.1.3. 
* gnu/packages/cran.scm (r-dvmisc): Update to 1.1.3.
[propagated-inputs]: Add r-cubature, r-data-table, r-dplyr, r-ggplot2,
r-mvtnorm, r-pracma, r-purrr, and r-survey.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus 5093cbdc04
gnu: r-summarytools: Update to 0.9.2. 
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.2.
[propagated-inputs]: Add r-checkmate, r-dplyr, r-magick, and r-tidyr.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus b1f39e8c38
gnu: r-multcomp: Update to 1.4-10. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-10.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus e0f861649c
gnu: r-emmeans: Update to 1.3.3. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.3.
[propagated-inputs]: Add r-numderiv.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus e2fee46f04
gnu: r-afex: Update to 0.23-0. 
* gnu/packages/cran.scm (r-afex): Update to 0.23-0.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus f18ca07eef
gnu: r-lmertest: Update to 3.1-0. 
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-0.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus 91f0b745f6
gnu: r-ks: Update to 1.11.4. 
* gnu/packages/cran.scm (r-ks): Update to 1.11.4.
[propagated-inputs]: Remove r-misc3d.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus 0b14b100a2
gnu: r-tidytree: Update to 0.2.4. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 4bc5d45144
gnu: r-bigrquery: Update to 1.1.0. 
* gnu/packages/cran.scm (r-bigrquery): Update to 1.1.0.
[propagated-inputs]: Add r-bit64.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 8a05d17037
gnu: r-gmp: Update to 0.5-13.4. 
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 7706a98cda
gnu: r-huge: Update to 1.3.0. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.0.
[propagated-inputs]: Add r-rcpp and r-rcppeigen; remove r-lattice.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus f59cdeaf25
gnu: r-igraph: Update to 1.2.4. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus ed494a0acd
gnu: r-dplyr: Update to 0.8.0.1. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.0.1.
[native-inputs]: Move r-rcpp and r-bh from here...
[propagated-inputs]: ...to here; remove r-bindrcpp.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 6caf80fbaf
gnu: r-lme4: Update to 1.1-21. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-21.
[native-inputs]: Move r-rcpp and r-rcppeigen from here...
[propagated-inputs]: ...to here; add r-boot.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 34a98f79d7
gnu: r-forcats: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-forcats): Update to 0.4.0.
[propagated-inputs]: Add r-ellipsis.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 6a0a2342dd
gnu: r-r6: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.4.0.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 4b16c00e9a
gnu: r-formatr: Update to 1.6. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.6.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 1f7a76a0c1
gnu: r-evaluate: Update to 0.13. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.13.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 48a4b775b9
gnu: r-mgcv: Update to 1.8-27. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-27.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 71fe7f9d21
gnu: r-stringi: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.3.1.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 605fcf8a23
gnu: r-stringr: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-stringr): Update to 1.4.0.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 17abcd521a
gnu: r-ranger: Update to 0.11.2. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.11.2.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 9066534d4c
gnu: r-openssl: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.2.2.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus a1d9387d82
gnu: r-catools: Update to 1.17.1.2. 
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.2.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 4fadef3ba0
gnu: r-xml: Update to 3.98-1.19. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.19.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus bc7895e1cf
gnu: r-flexmix: Update to 2.3-15. 
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-15.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 6be62a5a72
gnu: r-irlba: Update to 2.3.3. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.3.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus b22a20405a
gnu: r-registry: Update to 0.5-1. 
* gnu/packages/statistics.scm (r-registry): Update to 0.5-1.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 3db71d065c
gnu: r-r-utils: Update to 2.8.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.8.0.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 21886e730b
gnu: r-r-rsp: Update to 0.43.1. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.1.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus ed4100dc96
gnu: r-mvtnorm: Update to 1.0-10. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-10.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus ebd37b49f9
gnu: r-tidyr: Update to 0.8.3. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.3.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 84840deb95
gnu: r-purrr: Update to 0.3.1. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.1.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus b58220f599
gnu: r-pbapply: Update to 1.4-0. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-0.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus e51096b2ea
gnu: r-vgam: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-1.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus aeb11b7549
gnu: r-ggthemes: Update to 4.1.0. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.1.0.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus d235cf7268
gnu: r-shiny: Update to 1.2.0. 
* gnu/packages/cran.scm (r-shiny): Update to 1.2.0.
[arguments]: Adjust processing of minified JavaScript.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus 83ef38b038
gnu: r-epi: Update to 2.35. 
* gnu/packages/cran.scm (r-epi): Update to 2.35.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus 75cbc80037
gnu: r-network: Update to 1.14-377. 
* gnu/packages/cran.scm (r-network): Update to 1.14-377.
[propagated-inputs]: Add r-magrittr and r-tibble.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus fadc49c6e5
gnu: r-vegan: Update to 2.5-4. 
* gnu/packages/cran.scm (r-vegan): Update to 2.5-4.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus d1c2fd8eeb
gnu: r-future-apply: Update to 1.2.0. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.2.0.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus 6e8b38d3e8
gnu: Add r-furrr. 
* gnu/packages/cran.scm (r-furrr): New variable.
 2019-03-07 23:52:35 +01:00
Ricardo Wurmus f0bff69873
gnu: Add r-survey. 
* gnu/packages/cran.scm (r-survey): New variable.
 2019-03-07 23:52:35 +01:00
Ricardo Wurmus dab3e92c94
gnu: Add r-magick. 
* gnu/packages/cran.scm (r-magick): New variable.
 2019-03-07 23:52:35 +01:00
Ricardo Wurmus 3f22a115bd
gnu: Add r-ellipsis. 
* gnu/packages/cran.scm (r-ellipsis): New variable.
 2019-03-07 23:52:35 +01:00
Pierre Neidhardt d748cb5f47
gnu: Add autorandr. 
* gnu/packages/xdisorg.scm (autorandr): New variable.
 2019-03-07 22:23:38 +01:00
Julien Lepiller 945723be97
gnu: php: Update to 7.3.3. 
* gnu/packages/php.scm (php): Update to 7.3.3.
 2019-03-07 21:18:30 +01:00
Efraim Flashner dcf4d01f30
gnu: libmicrohttpd: Enable parallel tests. 
* gnu/packages/gnunet.scm (libmicrohttpd)[arguments]: Don't disable
parallel tests.
 2019-03-07 22:00:53 +02:00
Efraim Flashner c4bfce994e
gnu: libmicrohttpd: Update to 0.9.63. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.63.
[arguments]: Remove custom phase to add missing LDFLAGS.
 2019-03-07 22:00:53 +02:00
Efraim Flashner 0ef54303f3
gnu: c-graph: Update to 2.0.1. 
* gnu/packages/maths.scm (c-graph): Update to 2.0.1.
 2019-03-07 22:00:52 +02:00
Ludovic Courtès 0ae735bcc8
activation: Build account databases with (gnu build accounts). 
* gnu/build/activation.scm (enumerate, current-users, current-groups)
(add-group, add-user, modify-user, ensure-user): Remove.
(activate-users+groups)[touch, activate-user]: Remove.
[make-home-directory]: New procedure.
Rewrite in terms of 'user+group-databases', 'write-group', etc.
* gnu/build/install.scm (directives): Remove "/root".
* gnu/system/shadow.scm (account-activation): Remove (setenv "PATH" ...)
expression, which is now unneeded.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès ec600e4544
Add (gnu build accounts). 
* gnu/build/accounts.scm, tests/accounts.scm: New files.
* Makefile.am (SCM_TESTS): Add tests/accounts.scm.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add build/accounts.scm.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès 6061d01512
activation: Operate on <user-account> and <user-group> records. 
* gnu/system/accounts.scm (sexp->user-group, sexp->user-account): New
procedures.
* gnu/system/shadow.scm (account-activation): Call them in the arguments
to 'activate-users+groups'.
(account-shepherd-service): Likewise.
* gnu/build/activation.scm (activate-users+groups): Expect a list of
<user-account> and a list of <user-group>.  Replace uses of 'match' on
tuples with calls to record accessors.
(activate-user-home): Likewise.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès f6f67b87c0
system: Add (gnu system accounts). 
The (gnu system accounts) module is meant to be used both on the build-
and on the host-side.

* gnu/system/shadow.scm <top level>: Call 'default-shell'.
(<user-account>, <user-group>): Move to...
* gnu/system/accounts.scm: ... here.  New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add system/accounts.scm.
 2019-03-07 20:04:02 +01:00
Pierre Neidhardt b60e9fb82f
gnu: fuseiso: Fix typo in description. 
* gnu/packages/linux.scm (fuseiso)[description]: Fix typo.
 2019-03-07 17:12:46 +01:00
Tobias Geerinckx-Rice 1e1142d8cb
gnu: Add nullmailer. 
* gnu/packages/mail.scm (nullmailer): New public variable.
 2019-03-07 15:39:46 +01:00
Ricardo Wurmus 3189fad217
gnu: neovim: Let build phase return #T. 
* gnu/packages/vim.scm (neovim)[arguments]: Return #T from "patch-tic" phase.
 2019-03-07 13:39:45 +01:00
Ricardo Wurmus 3b296475bf
gnu: cd-hit: Support longer sequences. 
* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Pass MAX_SEQ to make
flags.
 2019-03-07 13:38:01 +01:00
Ricardo Wurmus 237ee6f2b2
gnu: python2-fastlmm: Disable tests. 
* gnu/packages/machine-learning.scm (python2-fastlmm)[arguments]: Disable
tests.
 2019-03-07 13:37:58 +01:00
Rutger Helling 9fd6ad3e35
gnu: wireguard: Update to 0.0.20190227. 
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190227.
[arguments]: Disable tests.
 2019-03-07 12:23:43 +01:00
Rutger Helling 9cb4bda222
gnu: nftables: Update to 0.9.0. 
* gnu/packages/linux.scm (nftables): Update to 0.9.0.
[arguments]: Add "--disable-man-doc" configure flag.
 2019-03-07 12:08:21 +01:00
Kei Kebreau ccf2446730
gnu: minetest: Update to 5.0.0. 
* gnu/packages/games.scm (minetest-data, minetest): Update to 5.0.0.
 2019-03-07 05:31:19 -05:00
Gábor Boskovits 0a10abf73e
gnu: neovim: Fix #34616. 
This fixes a segmentation fault in neovim, where an error return value
is passed in as a pointer.

* gnu/packages/vim.scm (neovim)[arguments](phases): Add 'patch-tic phase.
 2019-03-07 11:08:31 +01:00
Gábor Boskovits 2702aa9136
gnu: unibilium: Update to 2.0.0. 
* gnu/packages/terminal.scm (unibilium): Update to 2.0.0.
[native-inputs]: Add perl.
 2019-03-07 09:48:03 +01:00
Tobias Geerinckx-Rice abe6e670d3
gnu: sane-backends-minimal: Fix USB support. 
* gnu/packages/scanner.scm (sane-backends-minimal)[inputs]: Replace
libusb-compat with libusb.
[arguments]: Disable tests that require USB access.
 2019-03-07 02:13:26 +01:00
Mark H Weaver 274fa49100
gnu: linux-libre: Update to 5.0. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.
(%linux-libre-hash): Update hash.
(%linux-libre-4.20-patches): Rename to ...
(%linux-libre-5.0-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Use %linux-libre-5.0-patches instead of %linux-libre-4.20-patches.
* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/5.0-arm.conf,
gnu/packages/aux-files/linux-libre/5.0-arm64.conf,
gnu/packages/aux-files/linux-libre/5.0-i686.conf,
gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
 2019-03-06 17:51:55 -05:00
Mark H Weaver 9870f3ec61
gnu: linux-libre@4.19: Update to 4.19.27. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.27.
(%linux-libre-4.19-hash): Update hash.
 2019-03-06 17:51:12 -05:00
Mark H Weaver 1b1a6c028b
gnu: linux-libre@4.14: Update to 4.14.105. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.105.
(%linux-libre-4.14-hash): Update hash.
 2019-03-06 17:50:21 -05:00
Mark H Weaver 7850fa891d
gnu: linux-libre@4.9: Update to 4.9.162. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.162.
 2019-03-06 17:49:26 -05:00
Ricardo Wurmus fc240e7e05
gnu: synthv1: Update to 0.9.5. 
* gnu/packages/music.scm (synthv1): Update to 0.9.5.
 2019-03-06 22:26:07 +01:00
Ricardo Wurmus 6ef147bd1d
gnu: drumkv1: Update to 0.9.5. 
* gnu/packages/music.scm (drumkv1): Update to 0.9.5.
 2019-03-06 22:26:07 +01:00
Ricardo Wurmus cf6195906c
gnu: samplv1: Update to 0.9.5. 
* gnu/packages/music.scm (samplv1): Update to 0.9.5.
 2019-03-06 22:26:07 +01:00
Ricardo Wurmus 4b159add6f
gnu: padthv1: Update to 0.9.5. 
* gnu/packages/music.scm (padthv1): Update to 0.9.5.
 2019-03-06 22:26:07 +01:00
Ricardo Wurmus d935f69b11
gnu: yoshimi: Update to 1.5.10.2. 
* gnu/packages/music.scm (yoshimi): Update to 1.5.10.2.
 2019-03-06 22:26:06 +01:00
Vagrant Cascadian 01d8a2a3d9
gnu: electron-cash: Update to 3.3.6. 
* gnu/packages/finance (electron-cash): Update to 3.3.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-06 16:06:26 -05:00
Vagrant Cascadian 307603dd88
gnu: electrum: Update to 3.3.4. 
* gnu/packages/finance (electrum): Update to 3.3.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-06 16:06:26 -05:00
Vagrant Cascadian 11599cff1e
gnu: diffoscope: Update to 113. 
* gnu/packages/package-management (diffoscope): Update to 113.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-06 22:05:07 +01:00
Ricardo Wurmus 61e265d294
gnu: Add multitime. 
* gnu/packages/benchmark.scm (multitime): New variable.
 2019-03-06 21:55:14 +01:00
Ricardo Wurmus 8035819f4c
gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): ...to here.
 2019-03-06 21:43:33 +01:00
Ricardo Wurmus d56df35a25
gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
 2019-03-06 21:42:39 +01:00
Ricardo Wurmus f8780e96ff
gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): ...to here.
 2019-03-06 21:41:48 +01:00
Ricardo Wurmus 3a08940e1a
gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here.
 2019-03-06 21:35:20 +01:00
Ricardo Wurmus 7bc5d1b0e1
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Move from here...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
...to here.
 2019-03-06 21:33:17 +01:00
Ricardo Wurmus 13dabd6947
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
...to here.
 2019-03-06 21:31:41 +01:00
Ricardo Wurmus 0c792ffbd1
gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
 2019-03-06 21:30:30 +01:00
Ricardo Wurmus b7d93cf508
gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here.
 2019-03-06 21:29:20 +01:00
Ricardo Wurmus c3adc83054
gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here.
 2019-03-06 21:26:54 +01:00
Ricardo Wurmus 5acb9052cf
gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9): ...to here.
 2019-03-06 21:25:18 +01:00
Ricardo Wurmus fe0b76e215
gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here.
 2019-03-06 21:23:42 +01:00
Ricardo Wurmus 40a6505711
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
...to here.
 2019-03-06 21:23:20 +01:00
Ricardo Wurmus 66e35ce63b
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): Move
from here...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): ...to
here.
 2019-03-06 21:16:33 +01:00
Ricardo Wurmus bfb93b4889
gnu: r-geneplotter: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-geneplotter): Move from here...
* gnu/packages/bioconductor.scm (r-geneplotter): ...to here.
 2019-03-06 21:13:38 +01:00
Ricardo Wurmus 9f8698ad1c
gnu: Add guile-stis-parser. 
* gnu/packages/guile-xyz.scm (guile-stis-parser): New variable.
 2019-03-06 21:07:49 +01:00
Ricardo Wurmus 3d13b448e5
gnu: r-copynumber: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-copynumber): Move from here...
* gnu/packages/bioconductor.scm (r-copynumber): ...to here.
 2019-03-06 21:07:49 +01:00
Ricardo Wurmus 6aa896d82e
gnu: Update copyright headers. 
This is a follow-up to commit 1fe9a36173.

* gnu/packages/bioconductor.scm: Update copyright header to account for moved
package.
 2019-03-06 21:07:49 +01:00
Efraim Flashner d2b38df62e
gnu: font-gnu-unifont: Update to 12.0.01. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 12.0.01.
 2019-03-06 20:51:47 +02:00
Tobias Geerinckx-Rice 393b55d5c7
gnu: cabextract: Don't use NAME in source URI. 
* gnu/packages/compression.scm (cabextract)[source]: Hard-code NAME.
 2019-03-06 16:48:40 +01:00
Tobias Geerinckx-Rice bde093c23d
gnu: cabextract: Update to 1.9.1. 
* gnu/packages/compression.scm (cabextract): Update to 1.9.1.
 2019-03-06 16:48:39 +01:00
Tobias Geerinckx-Rice 8fadbc4bb3
gnu: lcov: Update to 1.14. 
* gnu/packages/code.scm (lcov): Update to 1.14.
 2019-03-06 16:48:39 +01:00
Marius Bakke 7016e62070
gnu: python-mako: Update home page. 
* gnu/packages/python-xyz.scm (python-mako)[home-page]: Use HTTPS.
 2019-03-06 16:30:48 +01:00
Marius Bakke dff79364cf
gnu: fuseiso: Fix typo. 
* gnu/packages/linux.scm (fuseiso)[synopsis]: s/imsages/images.
 2019-03-06 16:30:48 +01:00
Marius Bakke a9eeda20b4
gnu: valgrind: Add download mirror. 
* gnu/packages/valgrind.scm (valgrind)[source](uri): Add mirror.
 2019-03-06 16:30:48 +01:00
Ricardo Wurmus 38502a7d13
gnu: bismark: Update to 0.20.1. 
* gnu/packages/bioinformatics.scm (bismark): Update to 0.20.1.
[source]: Remove obsolete snippet.
[arguments]: Add build phase "replace-plotly.js" and add requried modules;
adjust "install" phase.
[inputs]: Add perl-carp and perl-getopt-long.
[native-inputs]: Add plotly.js and uglify-js.
 2019-03-06 16:26:23 +01:00
Pierre Neidhardt 1564e0fefa
gnu: Add fuseiso. 
* gnu/packages/linux.scm (fuseiso): New variable.
 2019-03-06 16:24:34 +01:00
Ricardo Wurmus cb66fb101f
gnu: Add r-scde. 
* gnu/packages/bioinformatics.scm (r-scde): New variable.
 2019-03-06 15:55:54 +01:00