53b1e10f23
gnu: Add r-affydata.
...
* gnu/packages/bioconductor.scm (r-affydata): New variable.
2019-09-15 20:53:01 +02:00
853211a51b
gnu: Add r-timeseriesexperiment.
...
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
2019-09-15 20:42:41 +02:00
739b2d10f0
gnu: Add r-wavcluster.
...
* gnu/packages/bioconductor.scm (r-wavcluster): New variable.
2019-09-15 20:41:01 +02:00
d77e69e9e1
gnu: r-spam: Update to 2.3-0.
...
* gnu/packages/cran.scm (r-spam): Update to 2.3-0.
2019-09-15 16:15:37 +02:00
e48e476f41
gnu: r-feather: Update to 0.3.5.
...
* gnu/packages/cran.scm (r-feather): Update to 0.3.5.
2019-09-15 16:15:37 +02:00
21fc601295
gnu: emacs-zerodark-theme: Update to 4.6.
...
* gnu/packages/emacs-xyz.scm (emacs-zerodark-theme): Update to 4.6.
[source]: Update to new source uri.
2019-09-15 15:29:18 +03:00
991c44109f
gnu: Add yubico-pam.
...
* gnu/packages/authentication.scm (yubico-pam): New variable.
2019-09-15 09:28:24 +02:00
9eac315069
gnu: r-delayedmatrixstats: Update to 1.6.1.
...
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.1.
2019-09-14 23:39:39 +02:00
82e343d14a
gnu: r-rhdf5lib: Update to 1.6.1.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.1.
2019-09-14 23:39:25 +02:00
cd25e29616
gnu: r-rtracklayer: Update to 1.44.4.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.4.
2019-09-14 23:39:20 +02:00
146f0ba5d1
gnu: r-genomicranges: Update to 1.36.1.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.1.
2019-09-14 23:39:12 +02:00
7f518ef70b
gnu: r-s4vectors: Update to 0.22.1.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.1.
2019-09-14 23:39:08 +02:00
11f973e093
gnu: r-mixomics: Update to 6.8.4.
...
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4.
2019-09-14 23:39:03 +02:00
f8fb5b75c9
gnu: r-gtrellis: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1.
2019-09-14 23:38:58 +02:00
ec0270b1e9
gnu: r-regioner: Update to 1.16.4.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4.
2019-09-14 23:38:51 +02:00
cd75c487c8
gnu: Add emacs-elixir-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-elixir-mode): New variable.
2019-09-14 19:44:40 +02:00
fda8ed0eb1
gnu: wine-staging: Update to 4.16.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.16.
* gnu/packages/wine.scm (wine-staging): Update to 4.16.
2019-09-14 13:01:28 +02:00
6e377b8893
import/utils: beautify-description: Recognize more fragments.
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* guix/import/utils.scm (beautify-description): Handle additional common
initial sentence fragments in descriptions.
2019-09-14 00:37:47 +02:00
981dcc3b0c
gnu: r-tidyr: Update to 1.0.0.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 1.0.0.
[propagated-inputs]: Add r-ellipsis, r-lifecycle, and r-vctrs.
2019-09-14 00:37:47 +02:00
17f3960f28
gnu: r-diffusionmap: Update to 1.2.0.
...
* gnu/packages/graph.scm (r-diffusionmap): Update to 1.2.0.
2019-09-14 00:37:46 +02:00
fd399b7a83
gnu: r-seqinr: Update to 3.6-1.
...
* gnu/packages/cran.scm (r-seqinr): Update to 3.6-1.
2019-09-14 00:37:46 +02:00
f5b1354fdb
gnu: Add r-lifecycle.
...
* gnu/packages/cran.scm (r-lifecycle): New variable.
2019-09-14 00:37:46 +02:00
cd3ba9c8c7
gnu: r-huge: Update to 1.3.3.
...
* gnu/packages/cran.scm (r-huge): Update to 1.3.3.
2019-09-14 00:37:46 +02:00
ac50956f31
gnu: r-tidytree: Update to 0.2.7.
...
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.7.
2019-09-14 00:37:46 +02:00
aef5e2aadd
gnu: r-activity: Update to 1.3.
...
* gnu/packages/cran.scm (r-activity): Update to 1.3.
[propagated-inputs]: Add r-insol.
2019-09-14 00:37:46 +02:00
d72da21d54
gnu: r-sjplot: Update to 2.7.1.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.7.1.
2019-09-14 00:37:46 +02:00
664e15ed8f
gnu: r-sjstats: Update to 0.17.6.
...
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.6.
[propagated-inputs]: Add r-parameters.
2019-09-14 00:37:46 +02:00
28110e6842
gnu: r-emmeans: Update to 1.4.1.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.1.
2019-09-14 00:37:46 +02:00
3ab3f7f3bb
gnu: r-sjlabelled: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.1.
2019-09-14 00:37:46 +02:00
4557f44755
gnu: r-circlize: Update to 0.4.8.
...
* gnu/packages/cran.scm (r-circlize): Update to 0.4.8.
2019-09-14 00:37:46 +02:00
a1f4399438
gnu: r-httpuv: Update to 1.5.2.
...
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.2.
2019-09-14 00:37:46 +02:00
5ad9da9ab3
gnu: Add r-insol.
...
* gnu/packages/cran.scm (r-insol): New variable.
2019-09-14 00:37:46 +02:00
a0244ef000
gnu: Add r-rgdal.
...
* gnu/packages/cran.scm (r-rgdal): New variable.
2019-09-14 00:37:46 +02:00
a5a79dd0b8
gnu: Add r-parameters.
...
* gnu/packages/cran.scm (r-parameters): New variable.
2019-09-14 00:37:45 +02:00
18a613fb29
gnu: gnujump: Add desktop file.
...
This fixes bug#37069.
* gnu/packages/games.scm (gnujump)[arguments]: Add custom
'create-desktop-entry phase to install a desktop file.
2019-09-13 17:07:16 +03:00
dbb0b06eb4
gnu: tipp10: Fix path in desktop entry.
...
* gnu/packages/patches/tipp10-fix-compiling.patch: Remove changes to
hardcode executable path.
2019-09-13 17:07:13 +03:00
0746c33eff
gnu: gmsh: Update home page.
...
This addresses a 'guix lint' warning.
* gnu/packages/maths.scm (gmsh)[home-page]: Update to avoid URL
redirection.
2019-09-13 14:53:57 +01:00
f61f424d5b
gnu: mcron: Update to 1.1.2.
...
* gnu/packages/guile-xyz.scm (mcron): Update to 1.1.2.
[arguments]: Remove custom 'set-timezone phase.
[native-inputs]: Add autoconf, automake, help2man, texinfo.
[inputs]: Remove ed, which.
2019-09-13 16:02:31 +03:00
f0e149752a
gnu: shellutils.scm: Sort module inputs.
...
* gnu/packages/shellutils.scm: Sort module inputs alphabetically.
2019-09-13 15:39:43 +03:00
8ebd56ea75
gnu: Add zsh-autosuggestions.
...
* gnu/packages/shellutils.scm (zsh-autosuggestions): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-09-13 15:39:34 +03:00
9c4cb1ef4c
gnu: Add ruby-rspec-wait.
...
* gnu/packages/ruby.scm (ruby-rspec-wait): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-09-13 15:39:28 +03:00
3af85f832d
build-system/cargo: Remove unused function.
...
* guix/build/cargo-build-system.scm (touch): Remove it.
2019-09-13 15:20:27 +03:00
43ffa11fdc
build-system/cargo: Use 'strip-store-file-name'.
...
This is a follow-up to f58b2f38e4
2019-09-13 15:20:16 +03:00
f69f37d54a
gnu: Add sh-z shell tool
...
* gnu/packages/shellutils.scm (sh-z): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-13 10:50:11 +02:00
a00a3132c7
gnu: Thunar: Update to 1.8.9.
...
* gnu/packages/xfce.scm (thunar): Update to 1.8.9.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-13 10:50:11 +02:00
ba05be2249
gnu: openblas: Set 'NUM_THREADS'.
...
Until now, OpenBLAS would use at most the N threads, where N is the
number of cores that happened to be available on the build
machine (typically N=8).
* gnu/packages/maths.scm (openblas/fixed-num-threads): New variable.
(openblas)[replacement]: New field.
(openblas-ilp64): Use 'package/inherit'.
2019-09-13 10:50:11 +02:00
5ad0a45221
gnu: python-matplotlib-documentation: Add missing input.
...
* gnu/packages/python-xyz.scm (python-matplotlib-documentation)[native-inputs]:
Add python-sphinx-copybutton.
(python2-matplotlib-documentation)[native-inputs]: Remove
python-sphinx-copybutton.
2019-09-13 00:44:57 +02:00
bcb22b3624
gnu: Add python-sphinx-copybutton.
...
* gnu/packages/sphinx.scm (python-sphinx-copybutton): New variable.
2019-09-13 00:44:57 +02:00
5ea654cfe0
gnu: python-matplotlib: Update to 3.1.1.
...
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.1.1.
[native-inputs]: Remove python-nose; add python-pytest and unzip; add
jquery-ui.
[arguments]: Add build phases "fix-and-disable-failing-tests" and
"install-jquery-ui", and move the "check" phase after the "install" phase;
use the default backend in setup.cfg.
(python2-matplotlib): Keep at version 2.2.3.
(python-matplotlib-documentation)[arguments]: Remove "check" phase.
2019-09-13 00:44:57 +02:00
16fddf17f5
gnu: Add r-assertr.
...
* gnu/packages/cran.scm (r-assertr): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-09-13 00:44:57 +02:00
Ricardo Wurmus