* gnu/packages/patches/openbabel-fix-crash-on-nwchem-output.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/chemistry.scm (openbabel)[source]: Use it.
Lack of a loopback device prevented the system from building starting
from commit 363c946b36.
* gnu/system/install.scm (%installation-services): Add
'static-networking-service-type' instance for 'lo'.
Previously, store items registered in the database by this code (for
instance, store items retrieved by 'guix offload' and passed to
'restore-file-set') would have an mtime of 0 instead of 1.
This would cause problems for things like .go files: Guile would
consider them to be older than the corresponding .scm file, and
consequently it would ignore them and possibly use another (incorrect)
.go file.
Reported by Ricardo Wurmus.
* guix/store/database.scm (reset-timestamps): Pass 1, not 0, to
'utime'.
* tests/store-database.scm ("register-path"): Check the mtime of FILE
and REF.
Fixes <https://bugs.gnu.org/32161>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
This mostly reverts 83099892e0.
* guix/store/deduplication.scm (counting-wrapper-port): New procedure.
(nar-sha256): Use it.
* guix/hash.scm (open-sha256-port)[position]: New variable.
[get-position]: New procedure.
Pass it to 'make-custom-binary-output-port'.
* tests/hash.scm ("open-sha256-port, hello"): Test 'port-position'.
That way, the source of most nodes is now a content-addressed store item
instead of a derivation.
* guix/self.scm (<file-mapping>): New record type.
(file-mapping-compiler): New procedure.
(scheme-node): Use 'file-mapping' instead of 'imported-files'.
(imported-files): Remove.
* guix/gexp.scm (imported-files/derivation): Add #:symlink? and honor
it.
(imported-files): Pass #:symlink? to 'imported-files/derivation'.
* tests/gexp.scm ("imported-files with file-like objects"): Add 'file=?'
and use it instead of calling 'readlink'.
* guix/gexp.scm (gexp->derivation): Add #:import-creates-derivation?.
Pass #:derivation? to 'imported-modules' and 'compiled-modules'. In -L
argument, check whether MODULES is a derivation.
(%not-slash): New variable.
(file-mapping->tree): New procedure.
(imported-files): Rename to...
(imported-files/derivation): ... this.
(imported-files): New procedure. Rewrite in terms of
'interned-file-tree' when possible; add #:derivation? parameter.
(imported-modules, compiled-modules): Add #:derivation? parameter and
pass it to 'imported-files'.
* guix/packages.scm (patch-and-repack): Pass
#:import-creates-derivation? to 'gexp->derivation'.
* tests/gexp.scm ("imported-files"): Adjust to no longer expect a
derivation.
* guix/store.scm (%not-slash): New variable.
(add-file-tree-to-store, interned-file-tree): New procedures.
* tests/store.scm ("add-file-tree-to-store"): New test.
* guix/serialization.scm (write-contents-from-port): New procedure.
(write-contents): Write in terms of 'write-contents-from-port'.
(filter/sort-directory-entries, write-file-tree): New procedures.
(write-file): Rewrite in terms of 'write-file-tree'.
* tests/nar.scm ("write-file-tree + restore-file"): New test.
Fixes a build failure with LLVM 6.0.x.
* gnu/packages/julia.scm (julia)[inputs]: Use LLVM-3.9.1 instead of
LLVM.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field.
(ghostscript/fixed): New variable.
* gnu/packages/patches/ghostscript-CVE-2018-10194.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Julien Lepiller