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28635 Commits

Author SHA1 Message Date
Marius Bakke ab1ac4a56b
gnu: glib: Update to 2.54.3. 
* gnu/packages/glib.scm (glib): Update to 2.54.3.
 2018-02-20 16:01:46 +01:00
Marius Bakke f0539f797a
gnu: util-linux: Update to 2.31.1. 
* gnu/packages/linux.scm (util-linux): Update to 2.31.1.
 2018-02-20 16:01:45 +01:00
Marius Bakke c8b16de75c
gnu: libuv: Update to 1.19.1. 
* gnu/packages/libevent.scm (libuv): Update to 1.19.1.
[arguments]: Use INVOKE instead of SYSTEM*.
 2018-02-20 16:01:45 +01:00
Leo Famulari 2a5b5bfd84
gnu: libtasn1: Update to 4.13. 
* gnu/packages/tls.scm (libtasn1): Update to 4.13.
[source]: Remove patches.
* gnu/packages/patches/libtasn1-CVE-2017-10790.patch,
gnu/packages/patches/libtasn1-CVE-2018-6003.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2018-02-19 21:50:10 -05:00
Arun Isaac baef70bb86
gnu: boost: Update to 1.66.0. 
* gnu/packages/boost.scm (boost): Update to 1.66.0.
[arguments]: Replace system* with invoke.
[home-page]: Update URI.
 2018-02-19 21:50:10 -05:00
Leo Famulari 6a778c7560
gnu: gnutls: Update to 3.5.18. 
* gnu/packages/tls.scm (gnutls): Update to 3.5.18.
 2018-02-19 21:50:10 -05:00
Alex Vong ad3c9f18da
gnu: tar: Update to 1.30. 
* gnu/packages/base.scm (tar): Update to 1.30.
[source]: Remove 'tar-CVE-2016-6321.patch'.
* gnu/packages/patches/tar-CVE-2016-6321.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-19 21:50:09 -05:00
Leo Famulari 36d37ca9c5
gnu: libgcrypt: Update to 1.8.2. 
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.8.2.
 2018-02-19 21:50:09 -05:00
Leo Famulari 7b8acffd60
gnu: libatomic-ops: Update to 7.6.2. 
* gnu/packages/bdw-gc.scm (libatomic-ops): Update to 7.6.2.
[description]: Fix typo.
 2018-02-19 21:50:09 -05:00
Leo Famulari 58f58cb44b
gnu: libgc: Update to 7.6.4. 
* gnu/packages/bdw-gc.scm (libgc): Update to 7.6.4.
 2018-02-19 21:50:09 -05:00
Tobias Geerinckx-Rice 13236d30a7
gnu: pango: Update to 1.41.1. 
* gnu/packages/gtk.scm (pango): Update to 1.41.1.
[inputs]: Add fribi.
 2018-02-20 03:01:41 +01:00
Tobias Geerinckx-Rice c3800f0b6e
gnu: lcms: Update to 2.9. 
* gnu/packages/ghostscript.scm (lcms): Update to 2.9.
[source]: Remove patch.
* gnu/packages/patches/lcms-CVE-2016-10165.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-02-20 03:01:41 +01:00
Tobias Geerinckx-Rice 09371ab4d0
gnu: harfbuzz: Update to 1.7.5. 
* gnu/packages/gtk.scm (harfbuzz): Update to 1.7.5.
 2018-02-20 03:01:40 +01:00
Tobias Geerinckx-Rice 9f2eb4ffad
gnu: kmod: Update phase style. 
* gnu/packages/linux.scm (kmod)[arguments]: Use MODIFY-PHASES syntax and
end phase in #t.
 2018-02-20 03:01:40 +01:00
Tobias Geerinckx-Rice eb67a470c7
gnu: kmod: Update to 25. 
* gnu/packages/linux.scm (kmod): Update to 25.
 2018-02-20 03:01:40 +01:00
Tobias Geerinckx-Rice b07e817e21
gnu: fftw: Update phase style. 
* gnu/packages/algebra.scm (fftw)[arguments]: Use MODIFY-PHASES syntax
and end phase with #t.
 2018-02-20 03:01:39 +01:00
Tobias Geerinckx-Rice a0d4d2d860
gnu: fftw: Update to 3.3.7. 
* gnu/packages/algebra.scm (fftw): Update to 3.3.7.
(fftw-3.3.7): Remove, and...
(fftw-avx): ...update the only caller.
 2018-02-20 03:01:39 +01:00
Tobias Geerinckx-Rice 4082f8ed34
gnu: bzip2: Use install-file. 
* gnu/packages/compression.scm (bzip2)[arguments]: Use simpler install-file
instead of copy-file.  Remove let binding for (now) single-use basename.
 2018-02-20 03:01:39 +01:00
Tobias Geerinckx-Rice 5ecc917d5a
gnu: lzip: Update to 1.20. 
* gnu/packages/compression.scm (lzip): Update to 1.20.
 2018-02-20 03:01:39 +01:00
Tobias Geerinckx-Rice 1f577b469a
gnu: chromaprint: Update to 1.4.3. 
* gnu/packages/mp3.scm (chromaprint): Update to 1.4.3.
[source]: Update URI.
 2018-02-19 23:14:02 +01:00
Tobias Geerinckx-Rice 6080632df8
gnu: socat: Update to 1.7.3.2. 
* gnu/packages/networking.scm (socat): Update to 1.7.3.2.
 2018-02-19 23:14:02 +01:00
Tobias Geerinckx-Rice 5404f1c29d
gnu: setbfree: Update to 0.8.5. 
* gnu/packages/music.scm (setbfree): Update to 0.8.5.
 2018-02-19 23:14:01 +01:00
Tobias Geerinckx-Rice 48fbb24c90
gnu: ola: Update to 0.10.6. 
* gnu/packages/lighting.scm (ola): Update to 0.10.6.
 2018-02-19 23:14:01 +01:00
Tobias Geerinckx-Rice 8af77fe96b
gnu: pciutils: Use HTTPS home page. 
* gnu/packages/pciutils.scm (pciutils)[home-page]: Use HTTPS.
 2018-02-19 23:14:01 +01:00
ng0 54a402ddd1
gnu: neomutt: Update to 20171215. 
* gnu/packages/mail.scm (neomutt): Update to 20171215.
[inputs]: Move "docbook-xsl" to [native-inputs].
[native-inputs]: Remove "autoconf". Add "tcl", "docbook-xml", "w3m".
[argumnets]: Switch to autosetup based build. Add new phases "fix-sasl-test",
"fix-docbook". Remove phase "autoconf".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-02-19 22:31:09 +01:00
mephi42 b91004c2f5
gnu: Add basic support for s390x-linux-gnu targets. 
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add
  "s390x-linux".
* gnu/packages/linux.scm (system->linux-architecture): Add "s390"
  prefix.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-02-19 22:22:21 +01:00
Ludovic Courtès 900be977ae
tests: Remove outdated comment. 
* gnu/tests/base.scm (run-basic-test): Remove outdated comment.
 2018-02-19 22:04:11 +01:00
Ludovic Courtès 27a2c9c3e0
marionette: Use QEMU's "VM channel" mechanism. 
* gnu/tests.scm (<marionette-configuration>)[device]: Default to
"/dev/virtio-ports/org.gnu.guix.port.0".
* gnu/tests.scm (marionette-shepherd-service): Remove (guix build
syscalls) from 'modules'.  Remove 'tcsetattr' call from 'start'.
* gnu/build/marionette.scm (make-marionette): Use "-virtserialport"
instead of "-virtconsole".
 2018-02-19 22:04:11 +01:00
Ludovic Courtès ce0a62f6c5
services: console-font: Don't emit the IUTF8 console code. 
Fixes <https://bugs.gnu.org/30505>.

* gnu/services/base.scm (unicode-start): Remove 'display' call to FD for
"\x1b%G" console code.
 2018-02-19 22:04:10 +01:00
Ludovic Courtès 7ffd6180a7
nls: Update 'fr' translation. 2018-02-19 22:04:10 +01:00
Hartmut Goebel 7e4e3df4e8
gnu: qqc2-desktop-style: Fix missing input 'qtquickcontrols2'. 
* gnu/packages/kde-frameworks.scm (qqc2-desktop-style)<inputs>:
  Add qtquickcontrols2.
 2018-02-19 20:30:53 +01:00
Ricardo Wurmus 21169e3148
gnu: mcomix: Disable tests. 
* gnu/packages/image-viewers.scm (mcomix)[arguments]: Disable tests.

Fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30523>.
 2018-02-19 18:33:19 +01:00
Ricardo Wurmus ab36fb17e6
gnu: nss-pam-ldapd: Update to 0.9.9. 
* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.9.
 2018-02-19 18:16:16 +01:00
Marius Bakke 5f3155ee6c
gnu: ddrescue: Update to 1.23. 
* gnu/packages/disk.scm (ddrescue): Update to 1.23.
 2018-02-19 17:47:11 +01:00
Marius Bakke 4dc159bb62
gnu: ffmpeg@2.8: Update to 2.8.14. 
* gnu/packages/video.scm (ffmpeg-2.8): Update to 2.8.14.
 2018-02-19 15:03:44 +01:00
Rutger Helling 4ecfc16839
gnu: xpra: Disable abstract X11 sockets. 
* gnu/packages/xorg.scm (xpra): Disable abstract X11 sockets.
 2018-02-19 12:56:47 +01:00
Efraim Flashner d81a739a1f
gnu: clisp: Fix building on aarch64-linux. 
* gnu/packages/lisp.scm (clisp)[arguments]: Remove 'bindings/glibc' module.
 2018-02-19 11:30:48 +02:00
Ricardo Wurmus 79c6af13d0
gnu: r-delayedmatrixstats: Update to 1.0.3. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.0.3.
 2018-02-19 09:53:05 +01:00
Ricardo Wurmus 59b2864d6c
gnu: r-scater: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.6.3.
 2018-02-19 09:53:05 +01:00
Ricardo Wurmus d578278e35
gnu: r-gviz: Update to 1.22.3. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.3.
 2018-02-19 09:53:05 +01:00
Ricardo Wurmus ca7855fcd2
gnu: r-gprofiler: Update to 0.6.4. 
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.4.
 2018-02-19 09:53:04 +01:00
Ricardo Wurmus 8877ab432e
gnu: r-ensembldb: Update to 2.2.2. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.2.2.
 2018-02-19 09:53:04 +01:00
Ricardo Wurmus ebec98ae1d
gnu: r-seurat: Update to 2.2.1. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.2.1.
[propagated-inputs]: Remove r-nmf; add r-metap.
 2018-02-19 09:53:04 +01:00
Ricardo Wurmus 3118b28644
gnu: r-qtl: Update to 1.42-7. 
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.42-7.
 2018-02-19 09:53:04 +01:00
Ricardo Wurmus 824c200475
gnu: r-genomicranges: Update to 1.30.2. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.2.
 2018-02-19 09:53:04 +01:00
Ricardo Wurmus e8484711c6
gnu: r-getopt: Update to 1.20.2. 
* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.2.
 2018-02-19 09:53:04 +01:00
Ricardo Wurmus 1e898bbaea
gnu: r-pryr: Update to 0.1.4. 
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.4.
 2018-02-19 09:53:04 +01:00
Ricardo Wurmus 50ee54eabd
gnu: r-bh: Update to 1.66.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.66.0-1.
 2018-02-19 09:53:04 +01:00
Ricardo Wurmus ffa7fe3062
gnu: r-nlme: Update to 3.1-131.1. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-131.1.
 2018-02-19 09:53:04 +01:00
Ricardo Wurmus 9800f7d9e8
gnu: r-bookdown: Update to 0.7. 
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.7.
[propagated-inputs]: Add r-tinytex.
 2018-02-19 09:53:04 +01:00