28f4d56dd3
gnu: ao: Update to 0-2.9d857d1.
...
* gnu/packages/engineering.scm (ao): Rename...
(libfive): ...to this new variable; update to 0-2.9d857d1.
[inputs]: Remove glfw, libepoxy, glm, guile-2.0; add qtbase, guile-2.2.
[home-page]: Use new libfive home page.
[description]: Adjust.
(ao): Redefine using 'deprecated-package'.
2018-03-30 22:23:43 +02:00
2d19a7e4f4
gnu: emacs-org: Change source and naming scheme.
...
* gnu/packages/emacs.scm (emacs-org): Switch back to ELPA. Adopt its naming
scheme.
2018-03-30 20:03:36 +02:00
5ecd2d28d0
gnu: emacs-org-contrib: Fix build.
...
* gnu/packages/emacs.scm (emacs-org-contrib): Update SHA256.
[version]: Add keyword.
[arguments]: Use new keyword.
2018-03-30 20:03:31 +02:00
fdc306879b
gnu: Add delly.
...
* gnu/packages/bioinformatics.scm (delly): New variable.
* gnu/packages/patches/delly-use-system-libraries.patch: New file.
* gnu/local.mk: Include delly-use-system-libraries.patch.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-03-30 10:48:01 -04:00
183ce98849
gnu: Add r-regioner.
...
* gnu/packages/bioconductor.scm (r-regioner): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-03-30 10:47:57 -04:00
f342bb58fe
gnu: rust: Update rust to 1.24.1.
...
* gnu/packages/rust.scm (rust-bootstrap): Freeze bootstrap version to 1.22.1.
Reorganize bootstrap binaries to match new "rust" package structure with two
ouputs "out" with Rust compiler and "cargo" with Cargo package manager.
Replace all "system*" by "invoke".
(rust-1.23): Rename "rustc" to "rust". Update sha256 for tarball. Add cargo
related dependencies. Install "cargo" as separate "rust" output. Remove
substitutes for parts that were fixed in "rustc" source code. Install
documentation to separate "doc" output. Update configuration according to
changes in "rustc" source code. Replace all "system*" by "invoke".
(rust): Create package for 1.24.1 rust release based on rust-1.23 release.
* guix/build-system/cargo.scm (default-rust): Replace "default-cargo" and
"default-rustc" functions with "default-rust" function.
(cargo-build-system): Take only one package as "rust" source. Use "rustc" of
default output of "rust" package, use "cargo" as "cargo" output of "rust"
package.
2018-03-30 15:46:53 +02:00
8456a4c5cb
gnu: ruby-2.2: Update to 2.2.10.
...
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.10.
2018-03-30 12:27:57 +10:00
049edeb24c
gnu: ruby-2.3: Update to 2.3.7.
...
* gnu/packages/ruby.scm (ruby-2.3): Update to 2.3.7.
2018-03-30 12:24:59 +10:00
f38ac742e6
gnu: mash: Update to 2.0.
...
* gnu/packages/bioinformatics.scm (mash): Update to 2.0.
2018-03-30 12:18:35 +10:00
c7a8aa131d
gnu: mafft: Update to 7.394.
...
* gnu/packages/bioinformatics.scm (mafft): Update to 7.394.
2018-03-30 12:18:35 +10:00
9a40b8d9b2
gnu: diamond: Update to 0.9.19.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.19.
2018-03-30 12:18:35 +10:00
315ed91efb
gnu: pybitmessage: Update to 0.6.3.2 [security fixes].
...
* gnu/packages/messaging.scm (pybitmessage): Update to 0.6.3.2.
[source]: Fetch from git.
2018-03-29 22:43:37 +02:00
80808d678a
gnu: hydrogen: Update to 1.0.0-beta1.
...
* gnu/packages/music.scm (hydrogen): Update to 1.0.0-beta1.
[source]: Fetch from git.
[arguments]: Add phase to fix installation directory for pixmaps.
[inputs]: Remove qt-4; add qtbase and qtxmlpatterns.
2018-03-29 22:40:30 +02:00
9f1ac4fa49
gnu: mod-host: Update to 0.10.6-3.1726ad06b.
...
* gnu/packages/music.scm (mod-host): Update to 0.10.6-3.1726ad06b.
2018-03-29 22:26:59 +02:00
9602ac76b4
gnu: drumkv1: Update to 0.9.0.
...
* gnu/packages/music.scm (drumkv1): Update to 0.9.0.
2018-03-29 22:22:50 +02:00
2a5d08daf4
gnu: samplv1: Update to 0.9.0.
...
* gnu/packages/music.scm (samplv1): Update to 0.9.0.
2018-03-29 22:22:50 +02:00
4503b18701
gnu: padthv1: Update to 0.9.0.
...
* gnu/packages/music.scm (padthv1): Update to 0.9.0.
2018-03-29 22:22:50 +02:00
7c60a23cb1
gnu: synthv1: Update to 0.9.0.
...
* gnu/packages/music.scm (synthv1): Update to 0.9.0.
2018-03-29 22:22:50 +02:00
15c5541bc8
gnu: qtractor: Update to 0.9.0.
...
* gnu/packages/music.scm (qtractor): Update to 0.9.0.
2018-03-29 22:22:50 +02:00
cee6d90f73
gnu: awesome: Remove obsolete snippet.
...
* gnu/packages/wm.scm (awesome)[source](snippet): Remove.
2018-03-29 21:30:15 +02:00
40fb6b84f9
gnu: xcb-util-xrm: Update to 1.3.
...
* gnu/packages/xdisorg.scm (xcb-util-xrm): Update to 1.3.
2018-03-29 21:30:15 +02:00
d2fd5c6532
gnu: mbedtls-apache: Update to 2.7.2.
...
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.2.
[source](snippet): Remove.
2018-03-29 21:30:15 +02:00
b6beda1d6b
gnu: Add botan.
...
* gnu/packages/crypto.scm (botan): New variable.
2018-03-29 14:40:34 -04:00
d4e0ebd016
gnu: Add fpm2.
...
* gnu/packages/password-utils.scm (fpm2): New variable.
Signed-off-by: Tonton <tonton@riseup.net>
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-29 18:43:09 +02:00
af1e3dfe27
gnu: Add screen-message.
...
* gnu/packages/xdisorg.scm (screen-message): New variable.
Signed-off-by: Tonton <tonton@riseup.net>
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-29 18:35:46 +02:00
95fb6b0413
gnu: r-lme4: Update to 1.1-16.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-16.
2018-03-29 17:45:45 +02:00
dc8450c178
gnu: r-curl: Update to 3.2.
...
* gnu/packages/web.scm (r-curl): Update to 3.2.
2018-03-29 17:36:57 +02:00
f36685b058
gnu: bspwm: Update to 0.9.4.
...
* gnu/packages/wm.scm (bspwm): Update to 0.9.4.
2018-03-29 17:36:50 +02:00
4bb5bdd963
gnu: rss-bridge: Update to 2018-03-11.
...
* gnu/packages/web.scm (rss-bridge): Update to 2018-03-11.
2018-03-29 17:36:39 +02:00
e086d2f68b
gnu: r-mutationalpatterns: Update to 1.4.3.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3;
[propagated-inputs]: Remove r-gridextra.
2018-03-29 15:50:44 +02:00
53e42694e5
gnu: kaiju: Update to 1.6.2.
...
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2;
[inputs]: Add zlib.
2018-03-29 15:40:52 +02:00
d232e02ecf
gnu: Add duperemove.
...
* gnu/packages/disk.scm (duperemove): New variable.
Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-29 15:17:35 +02:00
9c3f2c2e83
gnu: Add python-debug.
...
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>.
* gnu/packages/python.scm (python-debug): New variable.
2018-03-29 15:17:35 +02:00
594e5d7368
gnu: nano: Update to 2.9.5.
...
* gnu/packages/nano.scm (nano): Update to 2.9.5.
2018-03-29 16:08:06 +03:00
c974008d91
gnu: Add r-idr.
...
* gnu/packages/cran.scm (r-idr): New variable.
2018-03-29 14:26:44 +02:00
996bed0608
gnu: Add r-amap.
...
* gnu/packages/cran.scm (r-amap): New variable.
2018-03-29 14:11:21 +02:00
6174db2b2c
gnu: Add r-venndiagram.
...
* gnu/packages/cran.scm (r-venndiagram): New variable.
2018-03-29 14:08:36 +02:00
ddbf2a98ba
gnu: Add r-pastecs.
...
* gnu/packages/cran.scm (r-pastecs): New variable.
2018-03-29 13:54:30 +02:00
017bffc1a3
gnu: libusb4java: Adjust for building with libusb 1.0.22.
...
* gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove
"-Werror" flag.
2018-03-29 12:26:38 +02:00
b0a4b6d957
gnu: libusb-for-axoloti: Update patch.
...
* gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb
1.0.22.
2018-03-29 12:26:38 +02:00
7874e9e047
gnu: Refactor boot-service-type and activation-service-type.
...
* gnu/services.scm (boot-service-type) <compose>: Use the "identity"
procedure instead of the "append" procedure because it more accurately
reflects the intent, which is to simply return the single list of
extensions to which fold-services applies the "compose" procedure.
(activation-service-type) <compose>: Likewise.
2018-03-29 08:38:49 +02:00
ce353a548f
gnu: node: Update to 9.10.0.
...
* gnu/packages/node.scm (node): Update to 9.10.0.
2018-03-28 23:33:53 +02:00
b63af9b7c7
gnu: http-parser: Update to 2.8.0.
...
* gnu/packages/web.scm (http-parser): Update to 2.8.0.
2018-03-28 23:33:43 +02:00
0a8985f395
gnu: xf86-video-ati: Update to 18.0.1.
...
* gnu/packages/xorg.scm (xf86-video-ati): Update to 18.0.1.
2018-03-28 21:23:21 +02:00
4d967992d8
gnu: xf86-input-libinput: Update to 0.27.0.
...
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.27.0.
2018-03-28 21:23:21 +02:00
935806b822
gnu: ntp: Update to 4.2.8p11 [security-fixes].
...
Fixes CVE-2016-1549 and CVE-2018-{7170,7182,7183,7184,7185}.
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p11.
2018-03-28 14:59:47 -04:00
590bdc149b
gnu: openssl: Replace with OpenSSL 1.0.2o [fixes CVE-2018-0739].
...
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2o): New variable.
2018-03-28 14:07:45 -04:00
1cde746700
gnu: Add r-parsedate.
...
* gnu/packages/cran.scm (r-parsedate): New variable.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28 17:18:20 +02:00
3481c714c6
gnu: mu: Fix tests failures triggered by DST.
...
* gnu/packages/mail.scm (mu)[phases]: Add 'fix-date-tests.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28 17:14:40 +02:00
910deec66c
gnu: Add tcalc.
...
* gnu/packages/maths.scm (tcalc): New variables.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28 17:13:00 +02:00
733d66a532
gnu: culmus: Rename to font-culmus.
...
* gnu/packages/fonts.scm (culmus): Rename to...
(font-culmus): ...this. Re-indent.
2018-03-28 14:58:34 +05:30
0328c514ed
gnu: culmus: Switch to font-build-system.
...
* gnu/packages/fonts.scm (culmus): Switch to font-build-system.
[arguments]: Replace system* with invoke.
2018-03-28 14:58:34 +05:30
15795e0723
gnu: font-linuxlibertine: Switch to font-build-system.
...
* gnu/packages/fonts.scm (font-linuxlibertine): Switch to font-build-system.
[arguments]: Replace system* with invoke.
2018-03-28 14:58:34 +05:30
803b9e8bf4
gnu: font-lato: Switch to font-build-system.
...
* gnu/packages/fonts.scm (font-lato): Switch to font-build-system.
[source]: Use url-fetch/zipbomb.
2018-03-28 14:58:33 +05:30
6ef66d3f12
gnu: icecat: Add fix for CVE-2018-5148.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add the fix for CVE-2018-5148
from the upstream mozilla-esr52 repository.
2018-03-27 21:08:15 -04:00
4d99a3215c
gnu: mupdf: Fix CVE-2018-{6544,1000051}.
...
* gnu/packages/patches/mupdf-CVE-2018-1000051.patch,
gnu/packages/patches/mupdf-CVE-2018-6544.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
2018-03-27 19:00:03 -04:00
5bd43f7fd1
gnu: emacs-org, emacs-org-contrib: Update to 9.1.9.
...
* gnu/packages/emacs.scm (emacs-org):
(emacs-org-contrib): Update to 20180327, a.k.a. release 9.1.9.
2018-03-27 23:29:52 +02:00
78ba71b0b4
gnu: alpine: Update to 2.21.999.
...
* gnu/packages/mail.scm (alpine): Update to 2.21.999.
[source]: Change to new upstream location.
[home-page]: Use new location.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-27 23:26:15 +02:00
f7a5cf7a2d
nss: Remove '%compat' from the defaults.
...
* gnu/system/nss.scm (%compat): Add comment.
(<name-service-switch>)[group, password, shadow]: Remove %COMPAT from
the default value.
2018-03-27 23:26:15 +02:00
75176f1b94
gnu: zstd: Update to 1.3.4.
...
* gnu/packages/compression.scm (zstd): Update to 1.3.4.
2018-03-27 22:08:57 +02:00
15ff38f1b4
gnu: dovecot: Update to 2.3.1.
...
* gnu/packages/mail.scm (dovecot): Update to 2.3.1.
[arguments]: Rename ‘patch-other-shebangs’ phase to the more accurate
‘patch-other-file-names’... then patch more file names.
2018-03-27 22:02:01 +02:00
8960b2e64d
gnu: lyx: Use HTTPS home page.
...
* gnu/packages/tex.scm (lyx)[home-page]: Use HTTPS.
2018-03-27 22:00:14 +02:00
0fc3af7d88
gnu: openssl@1.1.0: Update to 1.1.0h [security fixes].
...
Fixes CVE-2017-3738 and CVE-2018-{0733,0739}.
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0h.
2018-03-27 15:45:41 -04:00
de0021322d
gnu: Remove unnecessary import.
...
* gnu/packages/guile.scm: Remove unnecessary import.
2018-03-27 14:51:44 +02:00
82b71ac366
activation: Pass '-d HOME' to 'usermod'.
...
Fixes a bug whereby changes to user home directories in the OS config
would never be effective.
Reported by Pierre Neidhardt <ambrevar@gmail.com>.
* gnu/build/activation.scm (modify-user): Pass '-d HOME'.
2018-03-27 14:51:44 +02:00
7ddd418a1d
gnu: bootstrap: Remove unneeded import.
...
* gnu/packages/bootstrap.scm: Remove unneeded (guix build utils) import.
2018-03-27 14:51:44 +02:00
473cd27781
gnu: Remove Haskell packages provided by GHC.
...
* gnu/packages/haskell.scm (ghc-array, ghc-binary, ghc-bytestring,
ghc-directory, ghc-haskeline, ghc-process, ghc-transformers,
ghc-transformers-0.4.2.0): Remove.
(ghc-tar)[inputs]: Remove ghc-array.
(ghc-hslogger)[inputs]: Remove ghc-directory.
* gnu/packages/version-control.scm (darcs)[inputs]: Remove ghc-array,
ghc-binary, and ghc-haskeline.
* gnu/packages/wm.scm (xmonad)[inputs]: Remove ghc-directory.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-03-27 11:24:20 +02:00
75657922a5
gnu: supercollider: Update to 3.9.2.
...
* gnu/packages/audio.scm (supercollider): Update to 3.9.2.
2018-03-27 04:38:16 +02:00
f649443b7b
gnu: gzdoom: Update to 3.3.0.
...
* gnu/packages/games.scm (gzdoom): Update to 3.3.0.
2018-03-27 03:26:48 +02:00
8a70a23ea6
gnu: ccache: Update to 3.4.2.
...
* gnu/packages/ccache.scm (ccache): Update to 3.4.2.
2018-03-27 03:26:47 +02:00
835cf37ceb
gnu: jetring: Update to 0.27.
...
* gnu/packages/gnupg.scm (jetring): Update to 0.27.
2018-03-27 03:26:47 +02:00
814612c0cc
gnu: libkomparediff2: Update to 17.12.3.
...
* gnu/packages/kde.scm (libkomparediff2): Update to 17.12.3.
2018-03-27 03:26:47 +02:00
36f3e1df5f
gnu: radeontop: Update to 1.1.
...
* gnu/packages/linux.scm (radeontop): Update to 1.1.
2018-03-27 03:26:47 +02:00
d6fb32b8a0
gnu: ruby-rake: Update to 12.3.1.
...
* gnu/packages/ruby.scm (ruby-rake): Update to 12.3.1.
2018-03-27 03:26:46 +02:00
81a2217120
gnu: ruby-asciidoctor: Update to 1.5.6.2.
...
* gnu/packages/ruby.scm (ruby-asciidoctor): Update to 1.5.6.2.
2018-03-27 03:26:46 +02:00
ef803aa52c
gnu: python-plotly: Update to 2.4.1.
...
* gnu/packages/graph.scm (python-plotly): Update to 2.4.1.
2018-03-27 03:26:46 +02:00
65ff6ab92c
gnu: python-django-crispy-forms: Update to 1.7.2.
...
* gnu/packages/django.scm (python-django-crispy-forms): Update to 1.7.2.
2018-03-27 03:26:46 +02:00
6e54870f60
gnu: r-randomforest: Update to 4.6-14.
...
* gnu/packages/statistics.scm (r-randomforest): Update to 4.6-14.
2018-03-27 03:26:45 +02:00
917378f787
gnu: r-blob: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-blob): Update to 1.1.1.
[propagated-inputs]: Add r-prettyunits.
2018-03-27 03:26:45 +02:00
5000283b5d
gnu: r-servr: Update to 0.9.
...
* gnu/packages/web.scm (r-servr): Update to 0.9.
[propagated-inputs]: Add r-xfun.
2018-03-27 03:26:45 +02:00
dadc8610e0
gnu: vis: Update to 0.5.
...
* gnu/packages/text-editors.scm (vis): Update to 0.5.
2018-03-27 03:26:45 +02:00
86bd0f797f
gnu: libreoffice: Update to 5.4.6.2.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.4.6.2.
2018-03-26 19:50:46 -04:00
faef71f926
gnu: hplip: Update to 3.18.3.
...
* gnu/packages/cups.scm (hplip): Update to 3.18.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-03-26 19:50:43 -04:00
4769ef0074
gnu: Add font-lohit.
...
* gnu/packages/fonts.scm (font-lohit): New variable.
2018-03-27 01:35:05 +05:30
196c8b3739
gnu: translate-shell: Update to 0.9.6.7.
...
* gnu/packages/patches/translate-shell-fix-curl-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.7.
[source](patches): Add it. [home-page]: Append slash.
2018-03-26 22:47:16 +03:00
e5e5eb1fcf
gnu: Add twitchy.
...
* gnu/packages/video.scm (twitchy): New public variable.
2018-03-26 22:47:16 +03:00
e0de023eae
gnu: Add perl-uri-escape.
...
* gnu/packages/perl-web.scm (perl-uri-escape): New public variable.
2018-03-26 22:47:16 +03:00
786d3de297
gnu: Add r-tidyverse.
...
* gnu/packages/cran.scm (r-tidyverse): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:58 +02:00
8a1ef6ac25
gnu: Add r-rvest.
...
* gnu/packages/cran.scm (r-rvest): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:58 +02:00
81a9d4a422
gnu: Add r-selectr.
...
* gnu/packages/cran.scm (r-selectr): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:58 +02:00
948740b08a
gnu: Add r-reprex.
...
* gnu/packages/cran.scm (r-reprex): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:58 +02:00
10487c30bc
gnu: Add r-callr.
...
* gnu/packages/cran.scm (r-callr): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:57 +02:00
d7637e5ed8
gnu: Add r-readxl.
...
* gnu/packages/cran.scm (r-readxl): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:57 +02:00
9a91c925f2
gnu: Add r-modelr.
...
* gnu/packages/cran.scm (r-modelr): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:57 +02:00
d2a507efd9
gnu: Add r-haven.
...
* gnu/packages/cran.scm (r-haven): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:57 +02:00
96e223621f
gnu: Add r-arules.
...
* gnu/packages/cran.scm (r-arules): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-03-26 14:58:25 -04:00
376015c35b
gnu: emacs-robe: Include the lib directory in the output.
...
This contains some Ruby code that needs to be accessible to use robe.
* gnu/packages/emacs.scm (emacs-robe)[arguments]: Include the lib directory,
in addition to the %default-includes.
2018-03-26 19:52:06 +01:00
158943f228
gnu: emacs-minitest: Switch source to the git repository.
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The 0.8.0 release was over 3 years ago, and there have been ~50 commits since.
* gnu/packages/emacs.scm (emacs-minitest): Wrap with let, and change source to
the git repository.
2018-03-26 19:52:06 +01:00
5b5dbece6b
gnu: ghc-cryptonite: Update to 0.25.
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* gnu/packages/haskell-crypto.scm (ghc-cryptonite): Update to 0.25.
[inputs]: Add ghc-basement.
2018-03-26 20:41:50 +02:00
150e8e25f5
gnu: ghc-memory: Update to 0.14.16.
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* gnu/packages/haskell.scm (ghc-memory): Update to 0.14.16.
[inputs]: Add ghc-basement and ghc-foundation.
2018-03-26 20:41:50 +02:00
Ricardo Wurmus