909301591d
gnu: Add sjcount.
...
* gnu/packages/bioinformatics.scm (sjcount): New variable.
2018-06-05 15:42:44 +02:00
97f6e9133a
services: Add dnsmasq-service-type.
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* gnu/services/dns.scm (dnsmasq-service-type): New variable.
(<dnsmasq-configuration>): New record type.
(dnsmasq-shepherd-service): New procedure.
* doc/guix.texi (DNS Services): Document it.
2018-06-05 20:05:31 +08:00
a64e30ed9e
gnu: Remove duplicate definition of r-heatmaply.
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* gnu/packages/cran.scm (r-heatmaply): Remove duplicate.
2018-06-05 13:59:54 +02:00
d0f3427433
gnu: Remove duplicate definition of r-heatmaply.
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* gnu/packages/cran.scm (r-heatmaply): Remove duplicate.
2018-06-05 13:59:15 +02:00
1ee581973a
gnu: r-heatmaply: Add r-knitr.
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* gnu/packages/cran.scm (r-heatmaply)[propagated-inputs]: Add r-knitr.
2018-06-05 13:51:27 +02:00
6da3aa3763
gnu: r-heatmaply: Add r-knitr.
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* gnu/packages/cran.scm (r-heatmaply)[propagated-inputs]: Add r-knitr.
2018-06-05 13:50:29 +02:00
e53152c72d
gnu: dropseq-tools: Remove failing phase.
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* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Delete
"generate-jar-indices" phase.
2018-06-05 13:12:13 +02:00
0c68f7fd9b
gnu: java-bouncycastle: Disable tests.
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* gnu/packages/java.scm (java-bouncycastle)[arguments]: Disable tests.
2018-06-05 12:49:41 +02:00
9cc66d75a2
gnu: pigx-scrnaseq: Use only one variant of Picard.
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* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
"java-picard" with "java-picard-2.10.3".
2018-06-05 11:26:34 +02:00
1f94ba9408
gnu: java-picard: Delete failing build phase.
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* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete
"generate-jar-indices" phase.
2018-06-05 11:26:08 +02:00
1ed386fc26
gnu: java-cisd-jhdf5: Delete failing build phase.
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* gnu/packages/java.scm (java-cisd-jhdf5)[arguments]: Delete build phase
"generate-jar-indices".
2018-06-05 11:17:03 +02:00
a993ad833e
gnu: java-picard-1.113: Delete failing build phase.
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* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Delete
"generate-jar-indices" build phase.
2018-06-05 11:15:21 +02:00
e847f402c1
gnu: java-picard-2.10.3: Delete failing build phase.
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* gnu/packages/bioinformatics.scm (java-picard-2.10.3)[arguments]: Delete
generate-jar-indices phase.
2018-06-05 11:14:38 +02:00
d7e6fb6d7e
Merge branch 'master' into core-updates
2018-06-05 11:09:39 +02:00
71c495c941
gnu: r-rtracklayer: Update to 1.40.3.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.3.
2018-06-05 10:40:42 +02:00
fb8c17baef
gnu: r-ranger: Update to 0.10.1.
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* gnu/packages/statistics.scm (r-ranger): Update to 0.10.1.
2018-06-05 10:40:42 +02:00
c9a879ed54
gnu: r-np: Update to 0.60-8.
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* gnu/packages/cran.scm (r-np): Update to 0.60-8.
2018-06-05 10:40:42 +02:00
83d5c2e106
gnu: t-series: Update to 0.10-45.
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* gnu/packages/cran.scm (t-series): Update to 0.10-45.
2018-06-05 10:40:42 +02:00
c152c6b361
gnu: r-ksamples: Update to 1.2-8.
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* gnu/packages/cran.scm (r-ksamples): Update to 1.2-8.
2018-06-05 10:40:42 +02:00
d19e0690b9
gnu: r-methylkit: Update to 1.6.1.
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* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.1.
2018-06-05 10:40:42 +02:00
0da6afa286
gnu: r-bamsignals: Update to 1.12.1.
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* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.1.
2018-06-05 10:40:42 +02:00
66ece08d05
Merge branch 'master' into core-updates
2018-06-05 09:59:27 +02:00
0ebef06dbe
build-system/r: Update to Bioconductor 3.7.
...
This is a follow-up to 41f17554d8
2018-06-05 09:58:52 +02:00
4bf0a1f8d1
gnu: p11-kit: Update to 0.23.12.
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* gnu/packages/tls.scm (p11-kit): Update to 0.23.12.
2018-06-05 03:19:48 +02:00
8b71684a20
gnu: elfutils: Disable test suite on MIPS.
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* gnu/packages/elf.scm (elfutils)[arguments]: Add (#:tests? #f) on MIPS.
2018-06-04 21:19:35 -04:00
46fce96881
gnu: beets: Return #t from phases.
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* gnu/packages/music.scm (beets)[arguments]: Substitute INVOKE for
SYSTEM* and return #t from all phases.
2018-06-05 03:19:26 +02:00
123f86d898
gnu: nano: Update to 2.9.8.
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* gnu/packages/nano.scm (nano): Update to 2.9.8.
2018-06-05 03:18:46 +02:00
0d35a95417
gnu: python-pycurl: Update to 7.43.0.2.
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* gnu/packages/python-web.scm (python-pycurl): Update to 7.43.0.2.
2018-06-05 03:18:46 +02:00
4682d48363
gnu: fvwm: Update to 2.6.8.
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* gnu/packages/fvwm.scm (fvwm): Update to 2.6.8.
2018-06-05 03:01:17 +02:00
f7b53e6855
gnu: perl-parse-yapp: Update to 1.21.
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* gnu/packages/perl.scm (perl-parse-yapp): Update to 1.21.
2018-06-05 03:01:17 +02:00
b5dfccd7b6
gnu: perl-text-balanced: Update to 2.03.
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* gnu/packages/perl.scm (perl-text-balanced): Update to 2.03.
[source]: Update URI.
2018-06-05 03:01:16 +02:00
971b8381ff
gnu: perl-posix-strftime-compiler: Update to 0.42.
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* gnu/packages/perl.scm (perl-posix-strftime-compiler): Update to
0.42.
2018-06-05 03:01:07 +02:00
27f89be5c9
gnu: perl-moosex-methodattributes: Update to 0.31.
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* gnu/packages/perl.scm (perl-moosex-methodattributes): Update to
0.31.
2018-06-05 03:00:58 +02:00
91cb6eaf52
gnu: perl-module-install: Update to 1.19.
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* gnu/packages/perl.scm (perl-module-install): Update to 1.19.
[source]: Update URI.
2018-06-05 01:31:32 +02:00
ed2e354b79
gnu: perl-memoize-expirelru: Update to 0.56.
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* gnu/packages/perl.scm (perl-memoize-expirelru): Update to 0.56.
[source]: Update URI.
2018-06-05 01:31:32 +02:00
01c6607af9
gnu: ccid, pcsc-lite: Move away from alioth.debian.org.
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* gnu/packages/security-token.scm (ccid, pcsc-lite)[source, home-page]:
Update upstream URI.
2018-06-04 18:27:59 +02:00
19b662ea7c
gnu: ranger: Enable image support.
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* gnu/packages/disk.scm (ranger)[inputs]: Add 'w3m'.
[arguments]: Add wrapper for W3MIMGDISPLAY_PATH environment variable.
2018-06-04 16:35:03 +02:00
fd17434249
gnu: lz4: Use HTTPS home page.
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* gnu/packages/compression.scm (lz4)[home-page]: Use HTTPS.
2018-06-04 15:35:48 +02:00
b6315bc0d2
gnu: thermald: Update to 1.7.2.
...
* gnu/packages/admin.scm (thermald): Update to 1.7.2.
[arguments]: Remove Upstart kluge as promised.
2018-06-04 15:35:47 +02:00
49d85a19fb
gnu: pdfgrep: Update to 2.1.1.
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* gnu/packages/pdf.scm (pdfgrep): Update to 2.1.1.
2018-06-04 15:35:47 +02:00
e1345dec67
gnu: lxqt-build-tools: Update to 0.5.0.
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* gnu/packages/lxqt.scm (lxqt-build-tools): Update to 0.5.0.
2018-06-04 15:35:47 +02:00
12eadf5649
gnu: perl-libintl-perl: Update to 1.29.
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* gnu/packages/perl.scm (perl-libintl-perl): Update to 1.29.
2018-06-04 15:35:47 +02:00
a0b9612fc9
gnu: perl-hash-multivalue: Update to 0.16.
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* gnu/packages/perl.scm (perl-hash-multivalue): Update to 0.16.
[source]: Update URI.
2018-06-04 15:35:46 +02:00
92299d669a
gnu: perl-file-pushd: Update to 1.016.
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* gnu/packages/perl.scm (perl-file-pushd): Update to 1.016.
2018-06-04 15:35:46 +02:00
cf25329661
gnu: perl-exception-class: Update to 1.44.
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* gnu/packages/perl.scm (perl-exception-class): Update to 1.44.
2018-06-04 15:35:46 +02:00
4f6c01e78a
gnu: perl-datetime-timezone: Update to 2.19.
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* gnu/packages/perl.scm (perl-datetime-timezone): Update to 2.19.
2018-06-04 15:35:46 +02:00
a1b16662bc
gnu: perl-test-without-module: Update to 0.20.
...
* gnu/packages/perl-check.scm (perl-test-without-module): Update to 0.20.
2018-06-04 15:35:45 +02:00
e40ab7382e
gnu: perl-datetime: Update to 1.49.
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* gnu/packages/perl.scm (perl-datetime): Update to 1.49.
2018-06-04 15:35:45 +02:00
854cf20647
gnu: perl-context-preserve: Update to 0.03.
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* gnu/packages/perl.scm (perl-context-preserve): Update to 0.03.
2018-06-04 15:35:45 +02:00
30c070d1ae
gnu: perl-class-load-xs: Update to 0.10.
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* gnu/packages/perl.scm (perl-class-load-xs): Update to 0.10.
[native-inputs]: Replace perl-test-requires with perl-test-needs.
Add perl-test-without-module.
2018-06-04 15:35:45 +02:00
Ricardo Wurmus