ca33a3ad97
gnu: python-matplotlib: Fix build.
...
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Correct
inputs. [install-doc] set PYTHONPATH prior to building docs.
2016-11-15 22:31:23 +01:00
2efabc5589
gnu: python-numpy-bootstrap, python-numpy: Fix build.
...
* gnu/packages/python.scm (python-numpy-bootstrap): Correct inputs, use
modify-phases, add dummy newlines character to string to make emacs happy,
set PYTHONPATH prior to running tests. (python-numpy): propagate inputs, set
PYTHONPATH prior to building docs.
2016-11-15 22:31:22 +01:00
9e8c6a37db
gnu: python-fonttools: Remove intervening directory in site-packges.
...
* gnu/packages/python.scm (python-fonttools): Add phase patch-setuppy.
2016-11-15 22:31:21 +01:00
b72ac1b54b
gnu: python2-pysnptools: Correct inputs.
...
dateutil, pytz, and six do not occur in the code.
Remove python-dateutil, python-pytz, python-six from inputs;
Move python-cython to native-inputs; move python-pandas to
propagated-inputs.
2016-11-15 22:31:21 +01:00
e408ffc302
gnu: python-zope-testing: Remove needless input.
...
* gnu/packages.python.scm (python-zope-testing): Remove
python-zope-interface from native-imports.
2016-11-15 22:31:20 +01:00
47f77210fc
gnu: python-zope-schema: Add missing inputs.
...
* gnu/packages.python.scm (python-zope-schema): Add python-coverage and
python-nose to native-inputs.
2016-11-15 22:31:19 +01:00
05c2fd3685
gnu: python-pytest-flakes: Fix build.
...
* python.scm (python-pytest-flakes): Set PYTHONPATH prior to running tests.
2016-11-15 22:31:18 +01:00
6151120a71
gnu: python-pillow: Fix build.
...
* gnu/packages/python.scm (python-pillow)[check-installed]: Add
installed site-package to PYTHONPATH.
2016-11-15 22:31:17 +01:00
5e1c9d242a
gnu: python-singledispatch: correct inputs.
...
python-six is only required for conversion, not at run-time
* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
[inputs] Move python-six to [native-inputs].
2016-11-15 22:31:17 +01:00
d2a8db92fe
gnu: python-pbr: Rework bootstrapping.
...
For breaking the cyclic build, formerly a separate (older) version was used
for bootstrapping. Now we use the same version just without tests and without
test dependencies.
* gnu/packages/python.scm (python-pbr-0.11, python2-pbr-0.11):
replace by … (python-pbr-minimal, python2-pbr-minimal).
(python-pbr) inherit from python-pbr-minimal, adding the requirements for
testing and building the documentation.
(python-fixtures) [native-inputs] Use python-pbr-minimal here.
(python-testrepository): [native-inputs] Add it here, it was a missing
dependency.
2016-11-15 22:31:16 +01:00
b2e66edf52
gnu: python-testrepositoryfixture: Correct inputs.
...
python-fixtures is required only for building.
* gnu/packages/python.scm (python-testrepository) [propagated-inputs] move
python-fixtures to [native-inputs].
2016-11-15 22:31:15 +01:00
424f0a4175
gnu: python-fixture: Enable tests.
...
* gnu/packages/python.scm (python-fixtures) [arguments] remove
keyword `#:tests?`.
2016-11-15 22:31:14 +01:00
ae92caddc5
gnu: python-fixture: Correct inputs.
...
python-pbr is required only for building.
* gnu/packages/python.scm (python-fixtures) [propagated-inputs] move
python-pbr-0.11 to [native-inputs].
2016-11-15 22:31:13 +01:00
6986669012
gnu: python-hdf5: Correct inputs.
...
According to setup.py python-six is requried at run-time, thus has to be a
propagated input.
* gnu/packages/python.scm (python-hdf5) [inputs]: Move `python-six` to
[propagated-inputs].
2016-11-15 22:31:12 +01:00
9820a02858
gnu: python-h5py: Remove needless "python2-variant" property.
...
* gnu/packages/python.scm (python-h5py) [python2-variant]: Remove
property. (python2-h5py): Don't strip property "strip-python2-variant".
2016-11-15 22:31:12 +01:00
d9a6e221e2
gnu: python-ccm: Update synopsis and description.
...
* gnu/packages/python.scm (python-ccm): Update synopsis and description.
2016-11-15 22:31:11 +01:00
e165f137d8
gnu: python-ccm: Add missing input python-psutil.
...
* gnu/packages/python.scm (python-ccm) [propagated-inouts]: Add
python-psutil.
2016-11-15 22:31:10 +01:00
ef7451131a
gnu: python-sphinx-rtd-theme: Remove inputs.
...
This package is a plugin for python-sphinx, it does not require python-sphinx
nor docutils, but is an add-on for python-sphinx and should not be installed
by it's own.
* gnu/packages/python/.scm (python-sphinx-rtd-theme)[inputs]: Remove.
2016-11-15 22:31:09 +01:00
ce40b38395
gnu: python-pytest-cov: Use upstream options for testing.
...
* gnu/packages/python.scm (python-pytest-cov): Replace phase "check"
by one passing the options found in upstream's tox.ini-file
to "python setup.py check".
2016-11-15 22:31:08 +01:00
b3e8b4bd0f
gnu: scons: Do not use setuptools for building.
...
* gnu/packages/python.scm (scons): Set "#:use-setuptools" to #f.
2016-11-15 22:31:07 +01:00
f2516de2fc
gnu: Fix python inputs, part 7: Ensure python-cython is a native-input.
...
* gnu/packages/audio.scm (python-pyliblo): [inputs] Move python-cyton to
[native-inputs].
* gnu/packages/bioinformatics.scm (python2-pybedtools): dito.
* gnu/packages/music.scm (beast, python-pyportmidi): dito.
* gnu/packages/python.scm (python2-fastlmm, python-kivy): dito.
2016-11-15 22:31:07 +01:00
328bb95d35
gnu: Fix python inputs, part 6: some inputs become native-inputs.
...
This patch handles the inputs which are native-inputs almost always like nose,
sphinx, and pytest.
* gnu/packages/python.scm
(python-jsonschema, python-numpydoc, python-mccabe, python-mistune,
python-ptyprocess, python-webob, python-apipkg, python-flake8-2.2.4)[inputs]
change to [native-inputs].
(python-flake8, tox) Likewise, add a comment.
(python-scikit-learn, python-numpy)[native-inputs] New element, move
python-nose here.
(python2-kombu)[inputs] change to [native-inputs], use python-kombu's
package-native-inputs.
2016-11-15 22:31:06 +01:00
482d95918e
gnu: Fix python inputs, part 5: some inputs become propagated-inputs
...
* gnu/packages/openstack.scm
(python-os-client-config)[inputs] change to
[native-inputs]. [propagated-inputs]: New element, move python-appdirs,
python-pyyaml here.
(python-git-review)[propagated-inputs]: New element, move python-requests
here.
* gnu/packages/python.scm
(python-rpy2)[propagated-inputs]: New element, move python-six here.
(python-xcffib)[inputs] move python-six to [propagated-inputs].
(python-flake8)[propagated-inputs]: New element, move python-pep8,
python-pyflakes, python-mccabe here.
(python-flake8-2.2.4)[propagated-inputs]: New element, move python-pep8,
python-pyflakes, python-mccabe here.
(python-pytest)[propagated-inputs]: New element, move python-py here.
(python-tox)[propagated-inputs]: New element, move all inputs except of
python-pytest here.
(python-botocore)[propagated-inputs]: New element, move python-dateutil,
python-docutils, python-jmespath here.
(awscli)[propagated-inputs]: New element, move python-colorama,
python-botocore, python-s3transfer, python-docutils, python-rsa here.
(python-mako)[propagated-inputs]: New element, move python-markupsafe here.
* gnu/packages/qemu.scm(python-libvirt)[propagated-inputs]: New element, move
python-lxml here.
2016-11-15 22:31:05 +01:00
dae73d9b9a
gnu: Fix python inputs, part 3: all native-inputs become propagated-inputs.
...
This patch contains the changes in python.scm where all [native-inputs]
are changed to [propagated-inputs].
* gnu/packages/python.scm.scm (python-feedgenerator): All [native-inputs] are
changed to [propagated-inputs].
2016-11-15 22:31:04 +01:00
e7881f3db4
gnu: Fix python inputs, part 2: all inputs become native-inputs.
...
This patch contains the changes where all [inputs] are changed to
[native-inputs].
* gnu/packages/python.scm (python-pytest, python-fixtures,
python-testrepository, python-virtualenv): All [inputs] are changed to
[native-inputs].
* gnu/packages/openstack.scm (python-bandit, python-debtcollector,
python-hacking, python-tempest-lib, python-oslo.config, python-oslo.context,
python-oslo.i18n, python-oslo.log, python-oslo.serialization,
python-oslosphinx, python-oslotest, python-oslo.utils): Likewise.
2016-11-15 22:31:03 +01:00
f22efa0152
gnu: Fix python inputs, part 1: all inputs become propagated-inputs.
...
This patch contains the changes where all [inputs] are changed to
[propagated-inputs]
* gnu/packages/python.scm (python-passlib, python-paramiko, python-ccm,
python-babel, python-keyring python-pandas, python-tzlocal,
python-parse-type, python-nose2, python-pytest, python-pytest-mock,
python-pytest-xdist, python-scripttest, python-testtools, python-pytest-cov,
python-testscenarios, python-pbr-0.11, python-oauthlib, python-jinja2,
python-sphinx, python-tzlocal, python-bugz, python2-pytest-mock, behave,
pelican, sqlalchemy-utils, python-pygridtools, python-urwidtrees,
python-tornado, python2-tornado, python-debian, python-execnet,
python-pytest-cache, pytest-localserver, python-clint, python-rply,
python-hy, python-rauth, python-rsa, python-celery, python-vobject, s3cmd,
python-prompt-toolkit, ptpython, python-requests-oauthlib, python-stem,
python-binaryornot, python2-binaryornot, python-nltk, python-pymongo,
python-schematics, python-url, python2-url, python-freezegun,
python-glances, python-graphql-core, python-graphql-relay, python-graphene,
python-nautilus, python-s3transfer): All [inputs] become
[propagated-inputs].
* gnu/packages/bioinformatics.scm (python-biopython): Likewise.
* gnu/packages/django.scm (pytest-django): Likewise.
* gnu/packages/mail.scm (python-mailmanclient): Likewise.
* gnu/packages/password-utils.scm (python-bcrypt): Likewise.
* gnu/packages/propbuf.scm (python-protobuf): Likewise.
* gnu/packages/rdf.scm (python-rdflib): Likewise.
SQACH all become propagated
2016-11-15 22:31:03 +01:00
b41a05ce49
gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs).
...
Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".
* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
configure-flags. (python-pillow) remove phase
"disable-egg-generation". (python-libarchive-c) Remove patching
setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
"prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
"disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
2016-11-15 22:31:02 +01:00
d8013ee221
gnu: Remove needless inputs python-pip and python2-pip.
...
This is installed together with Python 3 anyway and for our build
of Python 2.
* gnu/packages/python.scm (python2-fixtures): [inputs] remove "python-pip".
* gnu/packages/pdf.scm (python2-reportlab): [native-inputs] remove
"python2-pip". (python-reportlab)[properties]: remove "python2-variant".
2016-11-15 22:31:01 +01:00
f210e94432
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4b)
...
This patch contains the changes in python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited packge was the only change.
Change this to not inherit and remove the new needless call to
"strip-python2-variant (where applicable).
* gnu/packages/python.scm.scm: Remove inheriting Python 2 packages inheriting
from a Python 3 package if adding python-setuptools respective
python2-setuptools to [inputs], [native-inputs] and [propagated-inputs] have
been the sole reason for inheriting. Remove now needless [properties]
"python2-variant" where applicable.
(python2-lockfile, python2-keyring, python2-dateutil-2,
python2-parsedatetime, python2-pandas, python2-pyicu, python2-pytest-cov,
python2-pytest-runner, python2-pytest-xdist, python2-cov-core,
python2-itsdangerous, python2-numexpr, python2-q, python2-sqlalchemy-utils,
python2-alembic, python2-beautifulsoup4, python2-msgpack, python2-ipaddress,
python2-atomicwrites, python2-apipkg, python2-execnet, python2-pytest-cache,
python2-wtforms, python2-mako, python2-waitress, python2-wsgiproxy2,
python2-pyquery, python2-webtest, python2-translitcodec, python2-editor,
python2-sphinxcontrib-programoutput, python2-psycopg2, python2-vobject,
python2-flask, python2-cookies, python2-responses, python2-future,
python2-ply, python2-wcwidth, python2-prompt-toolkit, python2-jedi,
python2-requests-oauthlib, python2-pyserial, python2-nltk, python2-pymongo,
python2-sh, python2-schematics, python2-publicsuffix, python2-publicsuffix2,
python2-url, python2-freezegun, python2-cachecontrol, python2-lit,
python2-pytest-pep8, python2-pytest-flakes, python2-glances,
python2-betamax, python2-file, python2-flask-babel, python2-furl,
python2-imagesize python2-orderedmultidict, python2-pycodestyle,
python2-vcversioner, python2-graphql-core, python2-graphql-relay,
python2-validictory): Remove neesless input "python2-setuptools", don't
inherit, don't call strip-python2-variant.
(python-lockfile, python-keyring, python-dateutil-2, python-parsedatetime,
python-pandas, python-pyicu, python-pytest-cov, python-pytest-runner,
python-pytest-xdist, python-cov-core, python-itsdangerous, python-numexpr,
python-q, python-sqlalchemy-utils, python-alembic, python-beautifulsoup4,
python-msgpack, python-ipaddress, python-atomicwrites, python-apipkg,
python-execnet, python-pytest-cache, python-wtforms, python-mako,
python-waitress, python-wsgiproxy2, python-pyquery, python-webtest,
python-translitcodec, python-editor, python-sphinxcontrib-programoutput,
python-psycopg2, python-vobject, python-flask, python-cookies,
python-responses, python-future, python-ply, python-wcwidth,
python-prompt-toolkit, python-jedi, python-requests-oauthlib,
python-pyserial, python-nltk, python-pymongo, python-sh, python-schematics,
python-nltk, python-publicsuffix2, python-cachecontrol, python-lit,
python-pytest-pep8, python-pytest-flakes, python-glances, python-betamax,
python-file, python-flask-babel, python-furl, python-imagesize,
python-orderedmultidict, python-pycodestyle, python-vcversioner,
python-graphql-core, python-graphql-relay, python-validictory): Remove
"python2-variant" property.
2016-11-15 22:29:00 +01:00
5c31f4aa7c
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)
...
This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.
Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
python-twobitreader, python2-twobitreader,
python-plastid, python2-plastid,
python2-pybigwig,
python2-screed,
sra-tools): No longer "inherit" Python 2 packages
inheriting from a Python 3 package if the sole reason for inheriting was
adding python-setuptools respective python2-setuptools to [inputs],
[native-inputs] or [propagated-inputs]. Remove now needless [properties]
"python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
2016-11-15 22:28:59 +01:00
00e10c6e67
gnu: Remove python-setuptools and python2-setuptools from inputs (part 3)
...
This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.
* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
python-setuptools respective python2-setuptools from [inputs],
[native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
python2-oauthlib,
python2-seaborn,
python2-tornado,
python2-terminado,
python2-rauth,
python2-anyjson,
python2-amqp,
python2-kombu,
python2-billiard,
python2-celery,
python2-jellyfish,
python2-binaryornot,
python2-natsort,
python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
2016-11-15 22:28:38 +01:00
f3b98f4fec
gnu: Remove python-setuptools and python2-setuptools from inputs (part 2)
...
This patch contains the changes where removing setuptools from the inputs
affected some code-lines beside.
* gnu/packages/admin.scm (ansible): Remove all [inputs], [native-inputs] and
[propagated-inputs] where python-setuptools or python2-setuptools are the
sole entries. Remove python-setuptools and python2-setuptools listed on a
line by its own from [inputs], [native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (duplicity): Likewise.
* gnu/packages/bioinformatics.scm (bamm, python2-pybedtools,
python2-bx-python, python2-dendropy, python-pysam, python2-pysam, clipper,
crossmap, cutadapt, deeptools, grit, idr, python2-warpedlmm,
pbtranscript-tofu, seqmagick): Likewise.
* gnu/packages/docbook.scm (dblatex): Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg, python2-pyxdg): Likewise.
* gnu/packages/lirc.scm (python2-lirc): Likewise.
* gnu/packages/mp3.scm (eyed3): Likewise.
* gnu/packages/nutrition.scm (gourmet): Likewise.
* gnu/packages/openstack.scm (python-hacking, python2-hacking,
python-os-testr, python2-os-testr,
python-stevedore, python2-stevedore,
python-tempest-lib, python2-tempest-lib,
python-oslo.log, python2-oslo.log,
python-keystoneclient, python2-keystoneclient): Likewise.
* gnu/packages/password-utils.scm (assword): Likewise.
* gnu/packages/python.scm (python-passlib, python2-passlib,
python-babel, python2-babel,
python-parse-type,
python-pytest, python2-pytest,
python-scripttest, python2-scripttest,
python-testtools, python2-testtools,
python-testscenarios, python2-testscenarios,
python-subunit, python2-subunit,
python-pbr-0.11,
python-pbr, python2-pbr,
python-testrepository, python2-testrepository,
behave,
python-wheel, python2-wheel,
python-requests, python2-requests,
python-jsonschema, python2-jsonschema,
python-pyjwt, python2-pyjwt,
python-virtualenv, python2-virtualenv,
python-jinja2, python2-jinja2,
python-joblib, python2-joblib,
python-sphinx, python2-sphinx,
python-feedgenerator, python2-feedgenerator,
python-scikit-image, python2-scikit-image,
python-redis, python2-redis,
python2-fastlmm,
python-numpydoc, python2-numpydoc,
python-matplotlib, python2-matplotlib,
python2-pysnptools,
python-rpy2, python2-rpy2,
python-pillow, python2-pillow,
python-pycparser, python2-pycparser,
python-cffi, python2-cffi,
python-cairocffi, python2-cairocffi,
python-drmaa, python2-drmaa,
python-pathpy, python2-pathpy,
python-simplegeneric, python2-simplegeneric,
python-ipython, python2-ipython,
python-apsw, python2-apsw,
python-lxml, python2-lxml,
python-networkx, python2-networkx,
python-pyzmq, python2-pyzmq,
python-mccabe, python2-mccabe,
python-mccabe-0.2.1,
python-flake8, python2-flake8,
python-flake8-2.2.4,
python-mistune, python2-mistune,
python-ptyprocess, python2-ptyprocess,
python-llfuse, python2-llfuse,
python-webob, python2-webob,
python-xlrd, python2-xlrd,
python-tables, python2-tables,
python-pip, python2-pip,
python-libarchive-c, python2-libarchive-c,
python-docopt, python2-docopt,
python-pyrfc3339, python2-pyrfc3339,
python-configobj, python2-configobj,
python-clint, python2-clint,
python-rply, python2-rply,
python2-rpython,
python-widgetsnbextension, python2-widgetsnbextension
jupyter,
python-jupyter-console, python2-jupyter-console,
python-hy, python2-hy,
python-urllib3, python2-urllib3,
python-rsa, python2-rsa,
python-tox, python2-tox,
python2-hypothesis,
python-paste, python2-paste,
python-pastescript, python2-pastescript,
python2-unicodecsv,
python-pkgconfig, python2-pkgconfig,
python2-rope,
python-sqlparse, python2-sqlparse,
python-gevent, python2-gevent,
python-tabulate, python2-tabulate,
python-arrow, python2-arrow,
python-cleo, python2-cleo,
python-fake-factory, python2-fake-factory,
ptpython): Likewise.
* gnu/packages/rdf.scm (python-rdflib, python2-rdflib): Likewise.
* gnu/packages/terminals.scm (asciinema): Likewise.
* gnu/packages/version-control.scm (git-annex-remote-hubic): Likewise.
* gnu/packages/xdisorg.scm (arandr): Likewise.
2016-11-15 22:27:31 +01:00
5d85493284
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1b)
...
This patch contains the changes in all modules beside python.scm where
removing setuptools from the inputs could be achieved by removing complete
lines.
* gnu/packages/admin.scm (graphios, thefuck): Remove all [inputs],
[native-inputs] and [propagated-inputs] where python-setuptools or
python2-setuptools are the sole entries. Remove python-setuptools and
python2-setuptools listed on a line by its own from [inputs],
[native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (rdiff-backup): Likewise.
* gnu/packages/bioinformatics.scm (htseq, macs, python2-pbcore, rseqc,
multiqc): Likewise.
* gnu/packages/django.scm (python-django, python2-django,
python-django-simple-math-captcha, python2-django-simple-math-captcha):
Likewise.
* gnu/packages/docker.scm (python-docker-py, docker-compose): Likewise.
* gnu/packages/game-development.scm (python-pygame): Likewise.
* gnu/packages/key-mon.scm (key-mon): Likewise.
* gnu/packages/mail.scm (khard): Likewise.
* gnu/packages/music.scm (beets, python2-pyechonest): Likewise.
* gnu/packages/openstack.scm (python-bandit, python2-bandit,
python-debtcollector, python2-debtcollector,
python-mox3, python2-mox3,
python-os-client-config, python2-os-client-config,
python-oslo.config, python2-oslo.config,
python-oslo.context, python2-oslo.context,
python-oslo.i18n, python2-oslo.i18n,
python-oslo.serialization, python2-oslo.serialization,
python-oslosphinx, python2-oslosphinx,
python-oslotest, python2-oslotest,
python-oslo.utils, python2-oslo.utils,
python-swiftclient, python2-swiftclient): Likewise.
* gnu/packages/pdf.scm (pdfposter): Likewise.
* gnu/packages/tls.scm (python-acme, python2-acme): Likewise.
2016-11-15 21:58:44 +01:00
f54d6bacbf
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1a)
...
This patch contains the changes in python.scm where removing setuptools from
the inputs could be achieved by removing complete lines.
* gnu/packages/python.scm (python-psutil, python2-psutil,
python-py-bcrypt, python2-py-bcrypt,
python-paramiko, python2-paramiko,
python-httplib2, python2-httplib2,
python-ecdsa, python2-ecdsa,
python-ccm, python2-ccm,
python2-backport-ssl-match-hostname,
python-pycrypto, python2-pycrypto,
python-six, python2-six,
python-dateutil, python2-dateutil,
python2-mechanize,
python-extras, python2-extras,
python-mimeparse, python2-mimeparse,
python-nose, python2-nose,
python-nose2, python2-nose2,
python-unittest2, python2-unittest2,
python-py, python2-py,
python-testresources, python2-testresources,
python-fixtures-0.3.16,
python-fixtures, python2-fixtures,
python-coverage, python2-coverage,
python-discover, python2-discover,
python-exif-read, python2-exif-read,
python-pyld, python2-pyld,
python-certifi, python2-certifi,
python-click, python2-click,
python-vcversioner, python2-vcversioner,
python-unidecode, python2-unidecode,
python-pyyaml, python2-pyyaml,
python-markupsafe, python2-markupsafe,
python-pystache, python2-pystache,
python-docutils, python2-docutils,
python-pygments, python2-pygments,
python-sphinx-rtd-theme, python2-sphinx-rtd-theme,
python-blinker, python2-blinker,
python-rq, python2-rq,
python-numpy, python2-numpy,
python-distutils-extra, python2-distutils-extra,
python2-elib.intl,
python-pillow, python2-pillow,
python-xcffib, python2-xcffib,
python-decorator, python2-decorator,
python-gridmap, python2-gridmap,
python-pickleshare, python2-pickleshare,
python-isodate, python2-isodate,
python-html5lib, python2-html5lib,
python2-cssutils,
python-cssselect, python2-cssselect,
python-netifaces, python2-netifaces,
python-sympy, python2-sympy,
python-testlib, python2-testlib,
python2-xlib,
python-singledispatch, python2-singledispatch,
python-backports-abc, python2-backports-abc,
python-pep8, python2-pep8,
python-pyflakes, python2-pyflakes,
python-fonttools, python2-fonttools,
python-ly,
python-appdirs, python2-appdirs,
python-netaddr, python2-netaddr,
python-wrapt, python2-wrapt,
python-iso8601, python2-iso8601,
python-monotonic, python2-monotonic,
python-prettytable, python2-prettytable,
python-pyasn1-modules, python2-pyasn1-modules,
python-idna, python2-idna,
python-pretend, python2-pretend,
python-cryptography-vectors, python2-cryptography-vectors,
python-cryptography, python2-cryptography,
python-pyopenssl, python2-pyopenssl,
python-debian, python2-debian,
python-chardet, python2-chardet,
python-zope-event, python2-zope-event,
python-zope-i18nmessageid, python2-zope-i18nmessageid,
python-websocket-client, python2-websocket-client,
python-args, python2-args,
python-astor, python2-astor,
python2-functools32,
python2-futures,
python2-promise,
python-colorama, python2-colorama,
python-pluggy, python2-pluggy,
python-jmespath, python2-jmespath,
python-botocore, python2-botocore,
awscli,
python-pytest-subtesthack, python2-pytest-subtesthack,
python-pastedeploy, python2-pastedeploy,
python-magic, python2-magic,
python2-s3cmd,
python2-bz2file,
python-cysignals, python2-cysignals,
python-py3status,
python-tblib, python2-tblib,
python-greenlet, python2-greenlet,
python-twisted, python2-twisted,
python-kazoo, python2-kazoo,
python-pykafka, python2-pykafka,
python2-jsonrpclib,
python-chai, python2-chai,
python-inflection, python2-inflection,
python-pylev, python2-pylev,
python-lazy-object-proxy, python2-lazy-object-proxy,
python-dnspython, python2-dnspython,
python-email-validator, python2-email-validator,
python-ukpostcodeparser, python2-ukpostcodeparser,
python-pyaml, python2-pyaml,
python-flexmock, python2-flexmock,
python-orator, python2-orator,
python-bleach, python2-bleach,
python-ipywidgets, python2-ipywidgets,
python-nbconvert, python2-nbconvert,
python-nbformat, python2-nbformat,
python-axolotl-curve25519, python-axolotl2-curve25519,
python-axolotl, python2-axolotl,
python-nautilus, python-s3transfer): Remove python-setuptools and
python2-setuptools from [inputs], [native-inputs] or [propagated-inputs].
Remove [inputs], [native-inputs] and [propagated-inputs] where
python-setuptools or python2-setuptools were the sole entry.
2016-11-15 21:54:58 +01:00
15e57f5762
gnu: python-2.7: Add all guix prefixes in PYTHONPATH to site-prefixes.
...
* gnu/packages/patches/python-2.7-site-prefixes.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add patch.
2016-11-15 17:37:48 +01:00
aaf75c890b
gnu: ensure pip and setuptools are installed even for Python 2.
...
* gnu/packages/python.scm (python-2.7): Add "--with-ensurepip=install" to
configure-flags.
* doc/guix.texi (Python Modules): Document it.
2016-11-15 17:37:40 +01:00
b02b9a520e
gnu: libmicrohttpd: Update to 0.9.52.
...
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.52.
[home-page]: Use https.
2016-11-15 15:25:15 +02:00
f5a077b10f
gnu: octave: Update to 4.2.0.
...
* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
2016-11-15 15:21:15 +02:00
fccab9931c
gnu: parallel: Update to 20161022.
...
* gnu/packages/parallel.scm (parallel): Update to 20161022.
[home-page]: Use https.
2016-11-15 11:45:53 +02:00
6312043ca5
gnu: libcdio: Update to 0.94.
...
* gnu/packages/cdrom.scm (libcdio): Update to 0.94.
[home-page]: Use https.
2016-11-15 11:13:24 +02:00
3ded2761ab
gnu: gvpe: Update to 3.0.
...
* gnu/packages/vpn.scm (gvpe): Update to 3.0.
2016-11-15 11:06:15 +02:00
336f830961
gnu: cryptsetup: Update to 1.7.3.
...
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.3.
2016-11-15 09:45:37 +02:00
538fe01934
gnu: python-vcversioner: Update to 2.16.0.0.
...
* gnu/packages/python.scm (python-vcversioner): Update to 2.16.0.0.
[inputs]: Remove python-setuptools.
[properties]: New field.
(python2-vcversioner): Use 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
2016-11-15 09:45:28 +02:00
1f781865fb
gnu: fish: Update to 2.4.0.
...
* gnu/packages/shells.scm (fish): Update to 2.4.0.
2016-11-15 01:17:01 +01:00
e25c904f2c
services: Require wpa-supplicant-service for connman-service.
...
* gnu/services/networking.scm (connman-shepherd-service): Add
wpa-supplicant among list of requirements.
2016-11-15 00:19:23 +01:00
2cccbc2af2
services: Add wpa-supplicant-service.
...
* gnu/services/networking.scm (wpa-supplicant-service): New procedure.
(wpa-supplicant-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.
2016-11-15 00:19:17 +01:00
028bf3c0b2
gnu: connman: Use localstatedir outside of store.
...
* gnu/packages/connman.scm (connman): Use localstatedir outside of store.
2016-11-15 00:13:29 +01:00
8bcd6b91ff
gnu: python-jsonschema: Use 'nosetests'.
...
* gnu/packages/python.scm (python-jsonschema)[arguments]: Replace 'check
phase with python nosetests.
[native-inputs]: Add python-nose.
[home-page]: Use https.
(python2-jsonschema)[native-inputs]: Add python2-mock.
2016-11-14 22:49:50 +02:00
571ffdebc3
gnu: accountsservice: Update to 0.6.43.
...
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.43.
2016-11-14 21:02:10 +02:00
a4cb821791
gnu: guix-devel: Update development snapshot.
...
* gnu/packages/package-management.scm (guix-devel): Update to commit
7ca37da855
2016-11-14 15:39:32 +01:00
198eac2bca
gnu: guix: Really skip all the container tests.
...
* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Update
pattern in 'disable-container-tests' to match 'test-equal'.
2016-11-14 15:39:32 +01:00
88eaed6174
gnu: libpsl: Update to 0.15.0.
...
* gnu/packages/web.scm (libpsl): Update to 0.15.0.
2016-11-14 14:12:50 +01:00
7ca37da855
gnu: libinput: Enable GUI event tool.
...
* gnu/packages/freedesktop.scm (libinput)[inputs]: Add glib.
[native-inputs]: Add cairo, gtk+-3.
(libinput-minimal)[native-inputs]: Only pkg-config.
2016-11-14 13:06:02 +02:00
73bb984ec4
gnu: freedesktop.scm: Reorder modules alphabetically.
...
* gnu/packages/freedesktop.scm: Reorder modules alphabetically.
2016-11-14 12:15:40 +02:00
8c5cdf5f20
gnu: libinput: Update to 1.5.1.
...
* gnu/packages/freedesktop.scm (libinput): Update to 1.5.1.
2016-11-14 12:12:26 +02:00
b231b057cd
gnu: wayland-protocols: Update to 1.7.
...
* gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.7.
2016-11-14 11:55:01 +02:00
e66f0dd232
gnu: mpv: Use lua@5.2.
...
* gnu/packages/video.scm (mpv)[inputs]: Change 'lua' to 'lua-5.2'.
2016-11-14 09:03:55 +00:00
d9721bcf27
gnu: readline-6.2: Fix CVE-2014-2524.
...
* gnu/packages/patches/readline-6.2-CVE-2014-2524.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline-6.2): Use it.
2016-11-13 17:01:01 -05:00
27d7c4e93a
gnu: signify: Update to 20.
...
* gnu/packages/crypto.scm (signify): Update to 20.
2016-11-13 17:01:01 -05:00
142530178d
gnu: mailutils: Update to 3.0.
...
* gnu/packages/mail.scm (mailutils): Update to 3.0.
[arguments]: Adjust 'pre-build' phase.
* gnu/packages/patches/m4-gets-undeclared.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2016-11-13 21:12:32 +01:00
d81850d438
gnu: guile-ncurses: Update to 2.1.
...
* gnu/packages/guile.scm (guile-ncurses): Update to 2.1.
[home-page]: Use https.
2016-11-13 22:02:05 +02:00
927d850512
gnu: btrfs-progs: Update to 4.8.3.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.3.
2016-11-13 13:34:00 +01:00
917239ff99
gnu: tidy: Use ‘modify-phases’.
...
* gnu/packages/web.scm (tidy)[arguments]: Use the ‘modify-phases’ syntax.
2016-11-13 13:34:00 +01:00
3b0ac79500
gnu: protobuf: Replace dead Google Code home-page.
...
* gnu/packages/protobuf.scm (protobuf)[home-page]: Update it.
2016-11-13 13:33:59 +01:00
3b0f2ba46b
gnu: exfat-utils: Update to 1.2.4.
...
* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.4.
[source, home-page]: Move away from dead Google Code project.
[arguments, native-inputs]: Remove.
2016-11-13 13:33:59 +01:00
c25a51d5c6
gnu: clisp: Use readline@6.2.
...
* gnu/packages/lisp.scm (clisp)[inputs]: Use readline-6.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-13 13:00:44 +01:00
2cab1dd58b
Merge branch 'core-updates'
2016-11-13 00:34:16 +01:00
15abcabe4e
gnu: Add newsbeuter.
...
* gnu/packages/syndication.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-12 20:50:48 +02:00
c76dab7b36
gnu: Add stfl.
...
* gnu/packages/ncurses.scm (stfl): New variable.
2016-11-12 20:50:47 +02:00
8883b30165
gnu: Add perl-modern-perl.
...
* gnu/packages/perl.scm (perl-modern-perl): New variable.
2016-11-12 18:26:28 +01:00
5c66314bd9
gnu: libtiff: Fix CVE-2016-9273.
...
* gnu/packages/patches/libtiff-CVE-2016-9273.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed): Use it.
2016-11-12 11:05:19 -05:00
0a7f17f0e0
gnu: Add python-flask-restplus.
...
* gnu/packages/python.scm (python-flask-restplus): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:17:40 +01:00
1e6112d89f
gnu: Add python-rednose.
...
* gnu/packages/python.scm (python-rednose): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:15:08 +01:00
e2fca4906e
gnu: Add python-termstyle.
...
* gnu/packages/python.scm (python-termstyle): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:10:23 +01:00
998f9ac56d
gnu: guix: Update development snapshot.
...
This is a followup to 166ba5b102166ba5b102
2016-11-12 14:49:04 +01:00
4a38422157
gnu: prosody: fix SSL/TLS.
...
* gnu/packages/lua.scm (lua5.1-sec-0.5): New variable.
* gnu/packages/messaging.scm (prosody):
[inputs]: Change lua5.1-sec to lua5.1-sec-0.5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 13:04:45 +01:00
8be62d3f20
gnu: ruby-lumberjack: Update to 1.0.10.
...
* gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.10.
[native-inputs]: Add 'ruby-timecop'.
2016-11-11 22:56:13 +10:00
e87dfdee86
gnu: ruby-arel: Update to 7.1.4.
...
* gnu/packages/ruby.scm (ruby-arel): Update to 7.1.4.
2016-11-11 22:48:22 +10:00
16d8d8b289
gnu: ruby-rake-compiler: Update to 1.0.1.
...
* gnu/packages/ruby.scm (ruby-rake-compiler): Update to 1.0.1.
2016-11-11 22:45:38 +10:00
81d0bd2f44
gnu: ruby-hoe: Update to 3.15.2.
...
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.15.2.
2016-11-11 22:44:03 +10:00
c59491183a
gnu: ruby-rspec-core: Update to 3.5.4.
...
* gnu/packages/ruby.scm (ruby-rspec-core): Update to 3.5.4.
2016-11-11 22:40:39 +10:00
bb4bcb02c2
gnu: bundler: Update to 1.13.6.
...
* gnu/packages/ruby.scm (bundler): Update to 1.13.6.
2016-11-11 22:38:13 +10:00
e2bb2e1780
gnu: ruby-yard: Update to 0.9.5-1.d816482a.
...
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.5-1.d816482a.
[source]: Update source URL.
[arguments]: Remove unneeded substitutions. Change test target.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch (New
file)
* gnu/local.mk (dist_patch_DATA): Add it.
2016-11-11 22:15:37 +10:00
7c45670b32
gnu: r-org-mm-eg-db: Update to 3.4.0.
...
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
0cfac6f270
gnu: r-org-dm-eg-db: Update to 3.4.0.
...
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
f04a3eff98
gnu: r-org-ce-eg-db: Update to 3.4.0.
...
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
83f9a6fb60
gnu: r-org-hs-eg-db: Update to 3.4.0.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.4.0.
2016-11-11 09:08:07 +01:00
071c223bfa
gnu: linux-libre@4.4: Update to 4.4.31.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.31.
2016-11-11 01:31:19 -05:00
86fc6fe777
gnu: linux-libre: Update to 4.8.7.
...
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.7.
2016-11-11 01:31:15 -05:00
472fc855bc
gnu: Add guile-aspell.
...
* gnu/packages/guile.scm (guile-aspell): New variable.
2016-11-11 00:23:16 +01:00
2c5ab05bff
gnu: wordnet: Build with gcc@6 to prevent chunked literal strings.
...
* gnu/packages/wordnet.scm (wordnet)[arguments]: Remove
-fno-builtin-strcpy.
[native-inputs]: New field.
2016-11-11 00:23:16 +01:00
aba5182c69
gnu: python-pillow: Update to 3.3.3 [fixes CVE-2016-{9189,9190}].
...
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.3.3.
2016-11-10 18:17:50 -05:00
b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode".
...
This phase is no longer needed as upstream has merged the fix in the
current release.
* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
2016-11-10 18:49:49 +01:00
3f62fa2b81
gnu: inkscape: Use modify-phases syntax.
...
* gnu/packages/inkscape.scm (inkscape)[arguments]: Use modify-phases
syntax.
2016-11-10 18:49:48 +01:00
65d2f396f7
gnu: vim: Update to 8.0.0073.
...
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0073.
2016-11-10 17:30:08 +00:00
5970e8e248
container: Pass a list of <file-system> objects as things to mount.
...
* gnu/build/linux-container.scm (mount-file-systems): 'mounts' is now a
list of <file-system> objects instead of a list of lists ("specs").
Add call to 'file-system->spec' as the argument to 'mount-file-system'.
(run-container, call-with-container): Adjust docstring accordingly.
* gnu/system/file-systems.scm (spec->file-system): New procedure.
* gnu/system/linux-container.scm (container-script)[script]: Call
'spec->file-system' inside gexp.
* guix/scripts/environment.scm (launch-environment/container): Remove
call to 'file-system->spec'.
* tests/containers.scm ("call-with-container, mnt namespace")
("call-with-container, mnt namespace, wrong bind mount"): Pass a list of
<file-system> objects.
2016-11-10 18:01:44 +01:00
5e7eaccb14
linux-container: Use 'source-module-closure' when generating the script.
...
* gnu/system/linux-container.scm (container-script)[script]: Use
'source-module-closure' in 'with-imported-modules' form.
2016-11-10 18:01:44 +01:00
9e4e431e04
gnu: guix: Update development snapshot.
...
* gnu/packages/package-management.scm (guix-devel): Update to commit
324a2ba56c
2016-11-10 18:01:44 +01:00
1c79e0861a
gnu: gmsh: Update to 2.14.1
...
* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-10 18:57:57 +02:00
1b35fea19f
gnu: milkytracker: Update upstream location.
...
* gnu/packages/music.scm (milkytracker)[source]: Update source uri.
[home-page]: Change to new domain.
Reported-by: ng0 <ng0@we.make.ritual.n0.is>
2016-11-10 16:33:57 +00:00
Hartmut Goebel