bb3b35975c
build-system: texlive: Build union in configure phase.
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This allows us to use texmf.cnf instead of having to set all required
environment variables manually.
* guix/build/texlive-build-system.scm (configure): New procedure.
(build): Simplify.
(%standard-phases): Add configure phase.
* guix/build-system/texlive.scm (texlive-build): Include (guix build union) in
modules.
(%texlive-build-system-modules): Likewise.
2017-07-09 17:07:27 +02:00
1678be097b
build-system: texlive: Only build packages in the current directory.
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* guix/build/texlive-build-system.scm (build): Use scandir instead of
find-files.
2017-07-09 17:07:27 +02:00
fed7200862
gnu: deeptools: Update to 2.5.1.
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* gnu/packages/bioinformatics.scm (deeptools): Update to 2.5.1.
[arguments]: Remove.
[native-inputs]: Use "python-" instead of "python2-" variants.
[inputs]: Likewise; add python-py2bit.
2017-07-09 17:07:27 +02:00
eb2200f3bd
gnu: Add python-py2bit.
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* gnu/packages/bioinformatics.scm (python-py2bit): New variable.
2017-07-09 17:07:23 +02:00
bdb31853f0
gnu: Add java-jgit-4.2.
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* gnu/packages/version-control.scm (java-jgit-4.2): New variable.
2017-07-09 16:57:05 +02:00
2613f5aff0
gnu: Add java-jgit.
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* gnu/packages/version-control.scm (java-jgit): New variable.
2017-07-09 16:57:05 +02:00
f8e4d0224b
gnu: Add java-slf4j-api.
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* gnu/packages/java.scm (java-slf4j-api): New variable.
2017-07-09 16:57:04 +02:00
eb270ecfdd
gnu: Add java-javaewah.
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* gnu/packages/java.scm (java-javaewah): New variable.
2017-07-09 16:57:04 +02:00
218d093b15
gnu: Add java-classpathx-servletapi
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* gnu/packages/java.scm (java-classpathx-servletapi): New variable.
2017-07-09 16:57:03 +02:00
efd5a841e5
gnu: youtube-dl: Update to 2017.07.09.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.07.09.
2017-07-09 15:58:35 +02:00
ed40e7c5eb
gnu: libjpeg-turbo: Update to 1.5.2.
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* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.2.
[arguments]<#:phases>: Remove.
2017-07-09 15:12:53 +02:00
e2155f58c0
gnu: you-get: Update to 0.4.775.
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* gnu/packages/video.scm (you-get): Update to 0.4.775.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-07-09 21:27:37 +10:00
b3cc304b30
gnu: poppler: Use an ABI-compatible replacement to fix CVE-2017-9776.
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This is a followup to commit 95bbaa02aahttps://bugs.gnu.org/27621 > for more information.
Poppler 0.56.0's ABI is not compatible with Poppler 0.52.0, so it's not
possible to graft the newer version in place of the older one.
This change leaves CVE-2017-9775 unfixed for now.
* gnu/packages/patches/poppler-CVE-2017-9776.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler-0.56.0): Replace with ...
(poppler/fixed): ... new variable.
(poppler)[replacement]: Replaced with poppler/fixed.
2017-07-09 02:25:27 -04:00
447f75825f
gnu: sshuttle: Update to 0.78.3.
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* gnu/packages/vpn.scm (sshuttle): Update to 0.78.3.
2017-07-09 01:59:25 +02:00
5143517c99
gnu: wxmaxima: Update to 17.05.0.
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* gnu/packages/maths.scm (wxmaxima): Update to 17.05.0.
[source]: Update URL and add file-name.
[native-inputs]: Add autoconf, automake and gettext-minimal.
[arguments]: Add 'autoconf' phase.
2017-07-08 17:05:55 -04:00
fac2b430b9
gnu: font-gnu-unifont: Update to 10.0.04.
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* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.04.
2017-07-08 23:49:29 +03:00
dde1e152ce
doc: Add note about private-key during offload.
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* doc/guix.texi (Using the Offload Facility): Add note about private-key.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-07-08 18:29:35 +02:00
4732e6ee84
gnu: blast+: Update to 2.6.0.
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* gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
[origin]: Remove bundled pcre. Add patch.
[arguments]: Replace paths in run_with_lock.c. Configure with pcre.
[inputs]: Add pcre, perl, python.
* gnu/packages/patches/blast+-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-08 12:05:59 +10:00
f2fa86cc82
gnu: maxima: Ensure gcc is available at runtime.
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* gnu/packages/maths.scm (maxima)[inputs]: Add gcc.
[arguments]: Use modify-phases syntax. Add 'set-gcc-path' phase.
2017-07-07 20:47:28 -04:00
0ca1e77c14
gnu: perl-dbd-mysql: Update to 4.043.
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* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.043.
2017-07-07 20:34:52 -04:00
d28f90bed9
gnu: python-pyopenssl: Fix test failure on 32-bit platforms.
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* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pyopenssl)[source]: Use it.
2017-07-07 18:43:16 +02:00
4909eadfad
gnu: irssi: Update to 1.0.4 [fixes CVE-2017-{10965,10966}].
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* gnu/packages/irc.scm (irssi): Update to 1.0.4.
2017-07-07 12:36:00 -04:00
acc0f6bb58
guix system: Add file system label and uuid to iso9660-image.
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* gnu/system/vm.scm (system-disk-image): Pass root-label to ...
(iso9660-image): ... here. Add keyword arguments #:file-system-label
and #:file-system-uuid.
2017-07-07 18:04:31 +02:00
0b1e2ecb25
gnu: webkitgtk: Update to 2.16.5.
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* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.5.
2017-07-07 11:54:01 -04:00
5826e7b11b
gnu: rdma-core: Update to 14.
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* gnu/packages/linux.scm (rdma-core): Update to 14.
2017-07-07 15:24:14 +02:00
5d3474c5a9
gnu: catimg: Update to 2.3.2.
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* gnu/packages/image-viewers.scm (catimg): Update to 2.3.2.
2017-07-07 15:24:14 +02:00
642656a144
gnu: python-parsedatetime: Update to 2.4.
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* gnu/packages/python.scm (python-parsedatetime, python2-parsedatetime):
Update to 2.4.
2017-07-07 01:23:12 -04:00
93013f1e79
gnu: python-icalendar: Update to 3.11.5.
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* gnu/packages/python.scm (python-icalendar): Update to 3.11.5.
2017-07-07 01:23:08 -04:00
dab536fe1a
gnu: libtiff: Fix CVE-2017-{9936,10688}.
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* gnu/packages/patches/libtiff-CVE-2017-9936.patch,
gnu/packages/patches/libtiff-CVE-2017-10688.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-07 00:06:37 -04:00
ab104672e1
gnu: xorg-server: Fix CVE-2017-{10971,10972}.
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* gnu/packages/patches/xorg-server-CVE-2017-10971.patch,
gnu/packages/patches/xorg-server-CVE-2017-10972.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (xorg-server)[source]: Use them.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-06 23:52:22 -04:00
96dcaa0ca9
gnu: youtube-dl: Update to 2017.07.02.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.07.02.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-07-07 01:50:27 +02:00
0a66c38764
Revert "gnu: blast+: Update to 2.6.0."
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This reverts commit 18dea67dc3
2017-07-06 19:38:55 -04:00
5dfbd76971
gnu: shadow: Correctly match the system type.
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* gnu/packages/admin.scm (shadow)[inputs]: Use 'string-contains' instead
of 'string-prefix?' when matching the system type.
2017-07-07 00:44:55 +02:00
879b89d1ae
gnu: linux-libre@4.9: Update to 4.9.36.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.36.
2017-07-06 18:41:45 -04:00
95f69e9cfc
gnu: linux-libre@4.4: Update to 4.4.76.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.76.
2017-07-06 18:40:43 -04:00
856f68786f
gnu: iproute: Update to 4.12.0.
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* gnu/packages/linux.scm (iproute): Update to 4.12.0.
2017-07-06 15:57:16 +02:00
d3f52500f3
gnu: xpra: Update to 2.0.3.
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* gnu/packages/xorg.scm (xpra): Update to 2.0.3.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-07-06 13:28:08 +05:30
8c6acc3efe
gnu: freeipmi: Remove readline from inputs.
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This is a follow-up to 694b7c3180
2017-07-06 09:45:52 +03:00
694b7c3180
gnu: freeipmi: Update to 1.5.6.
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* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.6.
[inputs]: Remove readline.
2017-07-06 09:39:09 +03:00
08094dc926
gnu: zstd: Update to 1.3.0.
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* gnu/packages/compression.scm (zstd): Update to 1.3.0.
2017-07-06 01:28:05 +02:00
6c69663400
gnu: libvirt: Update to 3.5.0.
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* gnu/packages/qemu.scm (libvirt): Update to 3.5.0.
2017-07-06 01:28:05 +02:00
ab3cac3785
gnu: bash-completion: Update to 2.6.
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* gnu/packages/bash.scm (bash-completion): Update to 2.6.
2017-07-06 01:28:05 +02:00
a6a979cba3
gnu: mariadb: Update to 10.1.25.
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* gnu/packages/databases.scm (mariadb): Update to 10.1.25.
2017-07-06 00:15:14 +02:00
79937f72c3
gnu: strace: Update to 4.18.
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* gnu/packages/linux.scm (strace): Update to 4.18.
2017-07-06 00:15:13 +02:00
ece8bb3812
gnu: xscreensaver: Update to 5.37.
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* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.37.
2017-07-06 00:15:13 +02:00
ad01c7aa14
gnu: artanis: Update source URL.
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* gnu/packages/guile.scm (artanis)[source]: Change URL to mirror://gnu.
2017-07-06 00:02:41 +02:00
298fd38b4b
gnu: julia: Add support for aarch64-linux.
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* gnu/packages/julia.scm (julia)[arguments]: Add make-flag argument for
aarch64-linux.
[supported-systems]: Add aarch64-linux.
2017-07-05 20:26:46 +03:00
cdc827b3f3
gnu: gcompris: Update to 17.05.
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* gnu/packages/education.scm (gcompris): Update to 17.05.
2017-07-05 12:40:40 +03:00
0dd8791922
gnu: gcc@6: Update to 6.4.0.
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* gnu/packages/gcc.scm (gcc@6, gfortran@6): Update to 6.4.0.
2017-07-05 08:31:46 +03:00
7550f8eaeb
gnu: net-tools: Remove `hostname` from description.
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This is a followup to commit c9e0a44eec
2017-07-05 00:35:37 -04:00
Ricardo Wurmus