c072cf57b9
gnu: samtools: Update to 1.7.
...
* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
2018-03-06 16:03:04 +01:00
727d847980
gnu: htslib: Update to 1.7.
...
* gnu/packages/bioinformatics.scm (htslib): Update to 1.7.
[arguments]: Remove field.
2018-03-06 16:03:04 +01:00
e325c89076
gnu: r-rhdf5: Make build reproducible.
...
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and
host system information from settings file.
2018-03-06 16:03:04 +01:00
fe58ab013b
gnu: r-lambda-r: Run unit tests.
...
* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit.
[arguments]: Add build phase to delete test logs.
2018-03-06 16:03:04 +01:00
08ddb98aef
gnu: r-gtools: Make output deterministic.
...
* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid
running tempdir at build time.
2018-03-06 16:03:04 +01:00
7949c140b1
ui: 'load*' no longer fails on Guile 2.2.3 upon EACCES or similar.
...
Previously, if ~/.cache was not write-accessible, 'guix' would exit with
code 1 without printing any message. That was because the 'make-stack'
call would fail since the exception (a 'system-error) came from
'compile-file', which was called at a point where TAG wasn't installed
yet. Secondly, to mimick auto-compilation behavior, we just swallow
'system-error raised by 'compile-file'.
Reported by Clément Lassieur.
* guix/ui.scm (load*): Move 'compile-file' call in the dynamic extent of
TAG. Catch 'system-error around it and ignore it.
2018-03-06 10:50:39 +01:00
5ad13e6cdf
gnu: emacs-transmission: Update to 0.12.1.
...
* gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1.
2018-03-06 12:09:02 +03:00
69611d3eac
gnu: haskell-mode: Fix find emacs-stream elisp directory.
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* gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with
"\\.el$" in ‘el-dir’.
2018-03-06 10:34:59 +03:00
cee03b267c
gnu: ovmf: Fix build and add FIXME.
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* gnu/packages/firmware.scm (ovmf): Replace 'invoke' with 'system*'. Add FIXME
about failing script.
2018-03-06 08:27:07 +01:00
0f2778029a
gnu: java-ops4j-pax-tinybundles: Use distribution bndlib version.
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* gnu/packages/java.scm (java-ops4j-pax-tinybundles)[arguments]<#:phases>:
Modify fix-version to use the distibution version of java-aqute-bndlib.
2018-03-05 20:42:48 +01:00
c8213ffc52
gnu: perl-email-address: Update to 1.909.
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* gnu/packages/perl.scm (perl-email-address): Update to 1.909.
2018-03-05 17:32:11 +01:00
1c3de94cff
gnu: perl-sub-quote: Update to 2.005000.
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* gnu/packages/xml.scm (perl-sub-quote): Update to 2.005000.
2018-03-05 17:32:11 +01:00
503a00597b
gnu: perl-xml-compile-cache: Update to 1.06.
...
* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.06.
2018-03-05 17:32:11 +01:00
b5de208e84
gnu: perl-xml-rss: Update to 1.60.
...
* gnu/packages/xml.scm (perl-xml-rss): Update to 1.60.
2018-03-05 17:32:11 +01:00
437e5fae13
gnu: editres: Update to 1.0.7.
...
* gnu/packages/xorg.scm (editres): Update to 1.0.7.
2018-03-05 17:32:10 +01:00
cc7a4bbd27
gnu: tocc, libtocc: Use HTTPS home page.
...
* gnu/packages/search.scm (libtocc, tocc)[home-page]: Use HTTPS.
2018-03-05 17:32:10 +01:00
55b7cd10c2
gnu: perl-io-socket-ip: Update to 0.39.
...
* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.39.
2018-03-05 17:32:10 +01:00
530df311ac
gnu: perl-www-mechanize: Update to 1.87.
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* gnu/packages/web.scm (perl-www-mechanize): Update to 1.87.
2018-03-05 17:32:09 +01:00
9599339c59
gnu: openvpn: Mark up description.
...
* gnu/packages/vpn.scm (openvpn)[description]: Use @dfn.
2018-03-05 17:32:09 +01:00
0d34993a65
gnu: openvpn: Update to 2.4.5.
...
* gnu/packages/vpn.scm (openvpn): Update to 2.4.5.
2018-03-05 17:32:09 +01:00
211748d475
gnu: papi: Use HTTPS home page.
...
* gnu/packages/profiling.scm (papi)[home-page]: Use HTTPS.
2018-03-05 17:32:08 +01:00
f7c870f78a
gnu: papi: Fix documentation location.
...
* gnu/packages/profiling.scm (papi)[arguments]: Install ‘documentation’
to a customary subdirectory of /share/doc.
2018-03-05 17:32:08 +01:00
0ebc1b934d
gnu: xpra: Update to 2.2.5.
...
* gnu/packages/xorg.scm (xpra): Update to 2.2.5.
2018-03-05 12:29:37 +01:00
f44c7aaccd
ui: Better workaround for lack of '%fresh-auto-compile' on 2.2.3.
...
Fixes <https://bugs.gnu.org/29226 > for the most part.
* guix/ui.scm (load*): Add call to 'compile-file' on 2.2.3.
2018-03-05 10:54:45 +01:00
f285b17b35
nls: Add Simplified Chinese translation.
2018-03-05 10:41:18 +01:00
bdbece9055
build: Default to berlin.guixsd.org substitutes on aarch64.
...
Suggested by Efraim Flashner <efraim@flashner.co.il>.
* config-daemon.ac: Set 'guix_substitute_urls' to berlin.guixsd.org on
aarch64.
2018-03-05 10:41:18 +01:00
234d7ef567
build: Always use https substitute URLs.
...
* config-daemon.ac: Remove GUILE_MODULE_AVAILABLE check for (gnutls).
2018-03-05 10:41:18 +01:00
ca041ec1a3
doc: Adjust 'xset -fp' command to avoid symlinks.
...
Fixes <https://bugs.gnu.org/30655 >.
Reported by Marco van Hulten <marco@hulten.org>.
* doc/guix.texi (Application Setup): Adjust 'xset +fp' example.
2018-03-05 10:41:18 +01:00
6a4eaafee0
gnu: linux-libre@4.14: Update to 4.14.24.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.24.
(%linux-libre-4.14-hash): Update hash.
2018-03-05 03:43:45 -05:00
ee483a5626
gnu: linux-libre@4.9: Update to 4.9.86.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.86.
2018-03-05 03:43:02 -05:00
88b1a38e26
gnu: linux-libre@4.4: Update to 4.4.120.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.120.
2018-03-05 03:42:07 -05:00
68d70f6ae3
gnu: Add emacs-terraform-mode.
...
* gnu/packages/emacs.scm (emacs-terraform-mode): New variable.
2018-03-05 07:48:49 +00:00
dc97f7e20e
gnu: Add emacs-hcl-mode.
...
* gnu/packages/emacs.scm (emacs-hcl-mode): New variable.
2018-03-05 07:48:48 +00:00
16718b6776
services: Add openntpd service.
...
* gnu/packages/ntp.scm (openntpd)[arguments]: Add 'configure-flags to
set openntpd daemon's user and localstatedir. Add a custom phase to not
try to create said directory at install time.
* gnu/services/networking.scm (<openntpd-configuration>): New record type.
(openntpd-shepherd-service, openntpd-service-activation): New procedures.
(openntpd-service-type): New variable.
* doc/guix.texi (Networking Services): Add openntpd documentation.
2018-03-05 08:46:28 +02:00
ac1a9ce8b0
gnu: papi: Update phase style.
...
* gnu/packages/profiling.scm (papi)[arguments]: Substitute INVOKE for
SYSTEM*, end phases with #t, and don't explicitly install LICENSE.txt.
2018-03-04 18:03:46 +01:00
635dd0cc96
gnu: tomb: Update phase style.
...
* gnu/packages/crypto.scm (tomb)[arguments]: Substitute INVOKE for
SYSTEM* and end phases with #t.
2018-03-04 18:03:45 +01:00
9539016e3a
gnu: tomb: Use HTTPS home page.
...
* gnu/packages/crypto.scm (tomb)[home-page]: Use HTTPS.
2018-03-04 18:03:45 +01:00
ed36949a9d
gnu: footswitch: Update to 0.1-2.deedd87.
...
* gnu/packages/accessibility.scm (footswitch): Update to 0.1-2.deedd87.
2018-03-04 18:03:45 +01:00
bd128d5e88
gnu: footswitch: Remove redundant MKDIR-P.
...
* gnu/packages/accessibility.scm (footswitch)[arguments]: Remove MKDIR-P
before INSTALL-FILE.
2018-03-04 18:03:45 +01:00
92793c7b02
gnu: gitolite: Update phase style.
...
* gnu/packages/version-control.scm (gitolite): Substitute INVOKE for
SYSTEM* and end phases with #t.
2018-03-04 18:03:44 +01:00
7730b7179c
gnu: gitolite: Update to 3.6.7.
...
* gnu/packages/version-control.scm (gitolite): Update to 3.6.7.
2018-03-04 18:03:44 +01:00
d035eaa304
gnu: ii, sic: Use HTTPS home pages.
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* gnu/packages/irc.scm (ii, sic)[home-page]: Use HTTPS.
2018-03-04 18:03:44 +01:00
e0dbead5a7
gnu: ii: Update to 1.8.
...
* gnu/packages/irc.scm (ii): Update to 1.8.
2018-03-04 18:03:44 +01:00
53244d1ffa
gnu: cloc: Update phase style.
...
* gnu/packages/code.scm (cloc)[arguments]: Substitute INVOKE for SYSTEM*
and end phases with #t.
2018-03-04 18:03:44 +01:00
95943ed7dc
gnu: cloc: Update to 1.76.
...
* gnu/packages/code.scm (cloc): Update to 1.76.
[source]: Update origin URI scheme.
[inputs]: Add perl-parallel-forkmanager.
2018-03-04 18:03:43 +01:00
03b7195794
gnu: liblo: Mark up description.
...
* gnu/packages/audio.scm (liblo)[description]: Use @dfn.
2018-03-04 18:03:43 +01:00
3e57b7d99b
gnu: multipath-tools: Update to 0.7.4.
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* gnu/packages/linux.scm (multipath-tools): Update to 0.7.4.
[source]: Download using HTTPS.
2018-03-04 17:54:40 +01:00
5275f69e6e
gnu: freexl: Update to 1.0.5 [security fixes].
...
Fixes CVE-2018-7435, CVE-2018-7436, CVE-2018-7437, CVE-2018-7438 and
CVE-2018-7439.
* gnu/packages/xml.scm (freexl): Update to 1.0.5.
2018-03-04 17:54:40 +01:00
5b0b520e22
gnu: ceph: Update to 12.2.4.
...
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to
upstream changes.
* gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file.
* gnu/packages/patches/ceph-rocksdb-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 12.2.4.
[source](patches): Adjust.
[arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags. Build with
CMAKE-3.11. Adjust file substitutions. Wrap 'ceph' executable.
[native-inputs]: Add GPERF.
[inputs]: Replace BOOST with BOOST-1.66. Add PYTHON2-PRETTYTABLE.
2018-03-04 17:54:40 +01:00
1568cc14fa
gnu: Add cmake@3.11.
...
* gnu/packages/cmake.scm (cmake-3.11): New public variable.
2018-03-04 17:54:40 +01:00
Ricardo Wurmus