Commit Graph

10322 Commits

Author SHA1 Message Date
Leo Famulari 78e6c4a862 gnu: Add khal.
* gnu/packages/calendar.scm (khal): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari b97c1bfd56 gnu: python-urwid: Disable failing test test_remove_watch_file.
* gnu/packages/python.scm (python-urwid)[arguments]: Add
'disable-failing-test' phase.
[source]: Use pypi-uri.
2016-01-15 16:45:24 -05:00
Leo Famulari 226d333103 gnu: Update python-tzlocal to 1.2.
* gnu/packages/python.scm (python-tzlocal): Update to 1.2.
[source]: Use pypi-uri.
[arguments]: Remove the custom 'unpack phase.
[native-inputs]: Remove unzip, python-setuptools.
[propagated-inputs]: Add python-pytz.
2016-01-15 16:45:24 -05:00
Leo Famulari 6bbbb53eeb gnu: Add python-sphinxcontrib-newsfeed.
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 5c299bf016 gnu: Add python-icalendar.
* gnu/packages/python.scm (python-icalendar): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari a2f6a3d502 gnu: Add vdirsyncer.
* gnu/packages/dav.scm (vdirsyncer): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari f75bbb028a gnu: Add radicale.
* gnu/packages/dav.scm (radicale): New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-15 16:45:24 -05:00
Leo Famulari 89b8a5516f gnu: Add python-pytest-xprocess.
* gnu/packages/python.scm (python-pytest-xprocess): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 28cecbb7cc gnu: Add python-wsgi-intercept.
* gnu/packages/python.scm (python-wsgi-intercept): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari d7e729fe08 gnu: Add python-pytest-localserver.
* gnu/packages/python.scm (python-pytest-localserver): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 6720dbb49f gnu: Add python-pytest-cache.
* gnu/packages/python.scm (python-pytest-cache): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 848964fe11 gnu: Add python-execnet.
* gnu/packages/python.scm (python-execnet): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 7b3a4ee4c3 gnu: Add python-apipkg.
* gnu/packages/python.scm (python-apipkg): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 7b17cab902 gnu: Add python-click-log.
* gnu/packages/python.scm (python-click-log): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari d1deb90b3f gnu: Add python-click-threading.
* gnu/packages/python.scm (python-click-threading): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 561bb3cb1a gnu: Add python-requests-toolbelt.
* gnu/packages/python.scm (python-requests-toolbelt): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 5c6eea2ad1 gnu: Add python-atomicwrites.
* gnu/packages/python.scm (python-atomicwrites): New variable.
2016-01-15 16:45:24 -05:00
Ricardo Wurmus f5ca44b86e gnu: glade: Update to 3.18.5.
* gnu/packages/gnome.scm (glade): Update to 3.18.5.
[arguments]: Disable tests; add "fix-docbook" phase.
[inputs]: Replace "gtk+-2" with "gtk+".
[native-inputs]: Add "itstool", "libxslt", "docbook-xml", "docbook-xsl";
replace "python" with "python-2".
2016-01-15 22:29:37 +01:00
Mark H Weaver 45f2ffb48c gnu: openssh: Update to 7.1p2.
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-15 02:46:12 -05:00
Mark H Weaver 1beec63ac8 Revert "gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778]."
This reverts commit 6d139e53b5.
2016-01-15 02:45:58 -05:00
Mark H Weaver 6d139e53b5 gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778].
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-14 10:39:00 -05:00
David Thompson df1f1d6936 gnu: Add docker-compose.
* gnu/packages/docker.scm (docker-compose): New variable.
2016-01-14 09:17:12 -05:00
David Thompson b42c9c8124 gnu: Add python-dockerpty.
* gnu/packages/docker.scm (python-dockerpty): New variable.
2016-01-14 09:16:22 -05:00
David Thompson d020bfc2df gnu: Add python-docker-py.
* gnu/packages/docker.scm: New file.
* Makefile.am (GNU_SYSTEM_MODULES): Add it.
2016-01-14 09:16:22 -05:00
David Thompson 67c52bb3e7 gnu: Add python-websocket-client.
* gnu/packages/python.scm (python-websocket-client): New variable.
2016-01-14 09:12:23 -05:00
David Thompson 210bf49754 gnu: Add python-texttable.
* gnu/packages/python.scm (python-texttable, python2-texttable): New
variables.
2016-01-14 09:12:23 -05:00
David Thompson b3667afbd2 gnu: Update python-jsonschema to 2.5.1.
* gnu/packages/python.scm (python-jsonschema): Update to 2.5.1.
[inputs]: Add python-vcversioner.
2016-01-14 09:12:06 -05:00
David Thompson ea521b42c2 gnu: Add python-vcversioner.
* gnu/packages/python.scm (python-vcversioner, python2-vcversioner): New
variables.
2016-01-14 09:05:19 -05:00
David Thompson e90051808b gnu: Add version 2.7 variant of python-requests.
* gnu/packages/python.scm (python-requests-2.7): New variable.
2016-01-14 09:05:19 -05:00
Ricardo Wurmus 3141b83d4d gnu: r-go-db: Add missing input.
* gnu/packages/bioinformatics.scm (r-go-db)[propagated-inputs]: Add
  "r-annotationdbi".
2016-01-14 14:43:59 +01:00
Ricardo Wurmus d7786ce9b0 gnu: r-sparsem: Add missing "gfortran" input.
* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran".
2016-01-14 14:43:59 +01:00
Ricardo Wurmus 0047d26a22 gnu: bowtie: Update to 2.2.6.
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
2016-01-14 14:43:25 +01:00
Efraim Flashner 2d12284d38 gnu: gnupg: Add TOFU support.
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add sqlite.
2016-01-14 15:05:36 +02:00
Ben Woodcroft 869cda545d import: gem: Beautify description field.
* guix/import/gem.scm (gem->guix-package): Use 'beautify-description'.
2016-01-14 19:44:40 +10:00
Ben Woodcroft 2028a2c960 import: cran: Move beautify-description to utils module.
* guix/import/cran.scm (beautify-description): Move from here...
* guix/import/utils.scm: ... to here.
2016-01-14 19:44:36 +10:00
Alex Kost 6b3a1ce8d7 emacs: Fix heading face in "Package Info".
Reported by Ludovic Courtès <ludo@gnu.org> on #guix.
This fixes a regression introduced in commit 7171d824.

'insert-text-button' procedure does not allow to override a button face,
so a specialized button type should be used instead.

* emacs/guix-ui-package.el (guix-package-heading): New button type.
  (guix-package-info-insert-heading): Use it.
2016-01-14 01:12:24 +03:00
Ben Woodcroft 6b6f7d6a0e gnu: orfm: Update to 0.5.3.
* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3.
[native-inputs]: Add inputs required for tests.
[description]: Add commas.
2016-01-14 08:00:10 +10:00
Ben Woodcroft 3d84a99e73 gnu: Add ruby-bio-commandeer.
* gnu/packages/ruby.scm (ruby-bio-commandeer): New variable.
2016-01-14 08:00:02 +10:00
Ben Woodcroft 7c033c4627 gnu: Add ruby-systemu.
* gnu/packages/ruby.scm (ruby-systemu): New variable.
2016-01-14 07:51:44 +10:00
Ludovic Courtès 7a2eed3aac hydra: Add missing phase and inputs for 'make dist' job.
* build-aux/hydra/guix.scm (tarball-package): Inherit from 'guix-devel'
rather than 'guix'.  Pass #:phases to 'dist-package'.
2016-01-13 17:43:21 +01:00
Ludovic Courtès b8a35309f8 build-system/gnu: 'dist-package' can be passed the phases.
* guix/build-system/gnu.scm (dist-package): Add #:phases parameter and
honor it.
2016-01-13 17:43:21 +01:00
Ludovic Courtès 8c9ef2c3a2 monad-repl: Close connection when leaving the monad REPL.
* guix/monad-repl.scm (store-monad-language): Add 'store' parameter and
use it.  Remove call to 'open-connection'.
(enter-store-monad): Use 'with-store' and pass the store to
'store-monad-language.
2016-01-13 17:43:21 +01:00
Ricardo Wurmus e5a19fed19 gnu: julia: Update to 0.4.3.
* gnu/packages/julia.scm (julia): Update to 0.4.3.
(libuv-julia): Update to 07730c4bd595.
2016-01-13 17:05:38 +01:00
Alex Kost 6d268e5281 emacs: Move loading packages to "guix-emacs.el".
* emacs/guix-init.el: Move the code for auto-loading Emacs packages to...
  (guix-package-enable-at-startup): Move to...
* emacs/guix-emacs.el (guix-package-enable-at-startup): ... here.
2016-01-13 17:56:14 +03:00
Alex Kost e4e2154644 emacs: Make "guix-emacs.el" independent.
"guix-emacs.el" may be used just for "instructing" Emacs where to find
Emacs packages installed with Guix, so it should have as few
dependencies as possible.

See <http://lists.gnu.org/archive/html/guix-devel/2016-01/msg00022.html>.

* emacs/guix-emacs.el: Require 'guix-profiles' optionally.
  (guix-emacs-load-autoloads): Use 'guix-profile-prompt' only if it is
  available.
2016-01-13 17:56:14 +03:00
Alex Kost 08207339aa emacs: Complete --file in 'guix build' popup.
* emacs/guix-command.el (guix-command-improve-build-argument): Use
  'guix-read-file-name' to complete --file option.
2016-01-13 17:55:47 +03:00
Alex Kost 883fc5ed42 emacs: Add missing shell completions.
* emacs/guix-pcomplete.el (guix-pcomplete-complete-option-arg): Complete
  file name for '--install-from-file' option of 'guix package' command,
  and for '--file' and '--with-source' options of 'guix build' command.
2016-01-13 17:55:47 +03:00
Mark H Weaver 75418ae0fd gnu: isc-dhcp: Update to 4.3.3-P1 [fixes CVE-2015-8605].
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3-P1.
2016-01-13 09:38:57 -05:00
Ricardo Wurmus c44734115a gnu: samtools: Update to 1.3.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.3.
[arguments]: Enable tests for all architectures; set ncurses in
configure-flags instead of make-flags; simplify "patch-tests" phase;
restore "configure" phase.
2016-01-13 15:12:22 +01:00
Ludovic Courtès 93ce8a8e00 build: Use 127 as the Linux hash-bang limit.
Reported by taylanbayirli@gmail.com (Taylan Ulrich Bayırlı/Kammer).

* m4/guix.m4 (LINUX_HASH_BANG_LIMIT): Set to 127.
2016-01-13 11:13:34 +01:00