Commit Graph

41820 Commits

Author SHA1 Message Date
Ricardo Wurmus c538bcdd38
gnu: Add r-varianttools.
* gnu/packages/bioconductor.scm (r-varianttools): New variable.
2019-03-25 16:09:16 +01:00
Ricardo Wurmus 8a5460b4fb
gnu: Add r-triform.
* gnu/packages/bioconductor.scm (r-triform): New variable.
2019-03-25 16:09:07 +01:00
Ricardo Wurmus 3080b81af6
gnu: Add r-hapassoc.
* gnu/packages/cran.scm (r-hapassoc): New variable.
2019-03-25 16:02:15 +01:00
Ricardo Wurmus a0583c0d13
gnu: Add r-hierfstat.
* gnu/packages/cran.scm (r-hierfstat): New variable.
2019-03-25 15:58:38 +01:00
Vagrant Cascadian ab7f1eb97a
gnu: Add brightnessctl.
* gnu/packages/linux.scm (brightnessctl): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-25 15:21:15 +01:00
Ricardo Wurmus 80eb01c776
gnu: r-gkmsvm: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gkmsvm): Move from here...
* gnu/packages/bioconductor.scm (r-gkmsvm): ...to here.
2019-03-25 14:34:41 +01:00
Ricardo Wurmus bac0ca322c
gnu: r-kernlab: Move to (gnu packages cran).
* gnu/packages/machine-learning.scm (r-kernlab): Move from here...
* gnu/packages/cran.scm (r-kernlab): ...to here.
2019-03-25 14:33:02 +01:00
Ricardo Wurmus c5a2b518ad
gnu: r-wgcna: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-wgcna): Move from here...
* gnu/packages/cran.scm (r-wgcna): ...to here.
2019-03-25 14:05:09 +01:00
Ricardo Wurmus 72a216a9d0
gnu: r-optparse: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-optparse): Move from here...
* gnu/packages/cran.scm (r-optparse): ...to here.
2019-03-25 14:04:19 +01:00
Ricardo Wurmus 0ef062b338
gnu: r-bookdown: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-bookdown): Move from here...
* gnu/packages/cran.scm (r-bookdown): ...to here.
2019-03-25 14:03:21 +01:00
Ricardo Wurmus 469fb43891
gnu: r-sparql: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-sparql): Move from here...
* gnu/packages/cran.scm (r-sparql): ...to here.
2019-03-25 14:01:56 +01:00
Ricardo Wurmus 7cd4ff2f0c
gnu: Add r-tdthap.
* gnu/packages/cran.scm (r-tdthap): New variable.
2019-03-25 14:00:32 +01:00
Ricardo Wurmus b8fea3c859
gnu: Add r-hwde.
* gnu/packages/cran.scm (r-hwde): New variable.
2019-03-25 14:00:32 +01:00
Ricardo Wurmus 1cdd9f0e8a
gnu: Add r-ldheatmap.
* gnu/packages/cran.scm (r-ldheatmap): New variable.
2019-03-25 14:00:32 +01:00
Ricardo Wurmus d4a255a484
gnu: Add r-dlmap.
* gnu/packages/cran.scm (r-dlmap): New variable.
2019-03-25 14:00:32 +01:00
Ricardo Wurmus 73fcd22244
gnu: Add r-ibdreg.
* gnu/packages/cran.scm (r-ibdreg): New variable.
2019-03-25 14:00:31 +01:00
Ricardo Wurmus bffb58269f
gnu: Add r-bqtl.
* gnu/packages/cran.scm (r-bqtl): New variable.
2019-03-25 14:00:31 +01:00
Tobias Geerinckx-Rice c3b5c803f0
gnu: perl-svg: Update source URL.
* gnu/packages/perl.scm (perl-svg)[source]: Update URL.
2019-03-25 14:11:03 +01:00
Tobias Geerinckx-Rice 034eae9c12
gnu: perl-class-date: Update source URL.
* gnu/packages/perl.scm (perl-class-date)[source]: Update URL.
2019-03-25 14:11:03 +01:00
Tobias Geerinckx-Rice 587f764e2a
gnu: perl-mouse: Update source URL.
* gnu/packages/perl.scm (perl-mouse)[source]: Update URL.
2019-03-25 14:11:02 +01:00
Tobias Geerinckx-Rice 2db3b2d303
gnu: perl-carp: Update source URL.
* gnu/packages/perl.scm (perl-carp)[source]: Update URL.
2019-03-25 14:11:02 +01:00
Tobias Geerinckx-Rice a4876fbe17
gnu: perl-class-accessor-grouped: Update source URL.
* gnu/packages/perl.scm (perl-class-accessor-grouped)[source]:
Update URL.
2019-03-25 14:10:45 +01:00
Tobias Geerinckx-Rice a7da90936f
gnu: perl-base: Update source URL.
* gnu/packages/perl.scm (perl-base)[source]: Update URL.
2019-03-25 13:34:59 +01:00
Tobias Geerinckx-Rice 83617aec58
gnu: perl-datetime-calendar-julian: Update source URL.
* gnu/packages/perl.scm (perl-datetime-calendar-julian)[source]: Update URL.
2019-03-25 13:31:29 +01:00
Tobias Geerinckx-Rice ae61388fb5
gnu: perl-carp-clan: Update source URL.
* gnu/packages/perl.scm (perl-carp-clan)[source]: Update URL.
2019-03-25 13:27:48 +01:00
Tobias Geerinckx-Rice e68f20502c
gnu: perl-class-c3-componentised: Update source URL.
* gnu/packages/perl.scm (perl-class-c3-componentised)[source]:
Update URL.
2019-03-25 13:18:35 +01:00
Tobias Geerinckx-Rice 5ca9cb1e17
gnu: perl-plack-test-externalserver: Update source URL.
* gnu/packages/web.scm (perl-plack-test-externalserver)[source]:
Update URL.
2019-03-25 13:11:25 +01:00
Tobias Geerinckx-Rice fd9fe868f8
gnu: perl-moosex-emulate-class-accessor-fast: Update source URL.
* gnu/packages/perl.scm (perl-moosex-emulate-class-accessor-fast)
[source]: Update URL.
2019-03-25 12:59:39 +01:00
Tobias Geerinckx-Rice 357b69499a
gnu: perl-log-any: Update source URL.
* gnu/packages/perl.scm (perl-log-any)[source]: Update URL.
2019-03-25 12:59:39 +01:00
Tobias Geerinckx-Rice 3ed36f3153
gnu: perl-file-temp: Update source URL.
* gnu/packages/perl.scm (perl-file-temp)[source]: Update URL.
2019-03-25 12:59:39 +01:00
Tobias Geerinckx-Rice 799f484251
gnu: perl-object-signature: Update source URL.
* gnu/packages/perl.scm (perl-object-signature)[source]: Update URL.
2019-03-25 12:59:39 +01:00
Meiyo Peng f970946c1d
gnu: fmt: Update to 5.3.0.
* gnu/packages/pretty-print.scm (fmt): Update to 5.3.0.
  [arguments]: Remove #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:27 +01:00
Brian Leung 8dc329656b
gnu: Add emacs-company-jedi.
* gnu/packages/emacs-xyz.scm (emacs-company-jedi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung 1172d914ea
gnu: Add emacs-company-flow.
* gnu/packages/emacs-xyz.scm (emacs-company-flow): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung 06aff73855
gnu: Add emacs-jedi.
* gnu/packages/emacs-xyz.scm (emacs-jedi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung 16f6a75db0
gnu: Add emacs-python-environment.
* gnu/packages/emacs-xyz.scm (emacs-python-environment): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung 13e99cfcd8
gnu: Add emacs-prescient.
* gnu/packages/emacs-xyz.scm (emacs-prescient): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung 5247cd2a5e
gnu: Add emacs-company-auctex.
* gnu/packages/emacs-xyz.scm (emacs-company-auctex): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung 6cd504ce75
gnu: Add emacs-company-cabal.
* gnu/packages/emacs-xyz.scm (emacs-company-cabal): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung bb034ab080
gnu: Add emacs-company-lsp.
* gnu/packages/emacs-xyz.scm (emacs-company-lsp): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Pierre Langlois de5ea7d961
gnu: Add gPodder.
* gnu/packages/podcast.scm (gpodder): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Pierre Langlois b58ab1598f
gnu: Add python-mygpoclient.
* gnu/packages/gpodder.scm (python-mygpoclient): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:25 +01:00
Mark H Weaver 4518a9dfa8
gnu: icecat: Update to 60.6.1-guix1 [security fixes].
Includes fixes for CVE-2019-9810 and CVE-2019-9813.

* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.1-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
2019-03-25 05:23:39 -04:00
Ricardo Wurmus cd47dcf6a2
gnu: Add r-haplo-stats.
* gnu/packages/cran.scm (r-haplo-stats): New variable.
2019-03-25 10:02:03 +01:00
Ricardo Wurmus a8c965cfec
gnu: Add r-rms.
* gnu/packages/cran.scm (r-rms): New variable.
2019-03-25 10:02:03 +01:00
Ricardo Wurmus 6a472af3f6
gnu: Add r-polspline.
* gnu/packages/cran.scm (r-polspline): New variable.
2019-03-25 10:02:03 +01:00
Ricardo Wurmus 5ef7d057ed
gnu: Add r-snp-plotter.
* gnu/packages/cran.scm (r-snp-plotter): New variable.
2019-03-25 10:02:02 +01:00
Ricardo Wurmus 601ddf02cc
gnu: Add r-genetics.
* gnu/packages/cran.scm (r-genetics): New variable.
2019-03-25 10:02:02 +01:00
Mark H Weaver 33b233ba63
gnu: linux-libre: Update to 5.0.4.
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.4.
(%linux-libre-hash): Update hash.
2019-03-25 01:23:04 -04:00
Mark H Weaver be6d2713d3
gnu: linux-libre@4.19: Update to 4.19.31.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.31.
(%linux-libre-4.19-hash): Update hash.
2019-03-25 01:22:06 -04:00