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35384 Commits

Author SHA1 Message Date
Ludovic Courtès 8694935cc8
gnu: guix: Update to 4876bc8. 2018-07-06 04:52:54 +02:00
Ludovic Courtès 4876bc8234
gnu: guix: Update to 0.15.0. 2018-07-06 00:19:01 +02:00
Ludovic Courtès 359fdda40f
Update NEWS. 2018-07-05 22:16:39 +02:00
Ludovic Courtès c35f77c5a0
doc: Update URL of the Emacs-Guix manual. 
* doc/htmlxref.cnf (EMACS_GUIX): Update URL.
 2018-07-05 22:16:10 +02:00
Ludovic Courtès 56b4dabc2b
doc: Mention translations of the manual. 
* doc/guix.texi (Top): Add note about l10n.
* doc/htmlxref.cnf: Add "guix.fr".
 2018-07-05 22:13:23 +02:00
Ludovic Courtès ee75e80c05
tests: Skip 'guix-pack.sh'. 
This works around a regression introduced in commit
66e9944e07 while waiting for a proper fix.

* tests/guix-pack.sh: Add "exit 77".
 2018-07-05 21:35:55 +02:00
Ludovic Courtès 1400776f52
Update NEWS. 2018-07-05 17:19:09 +02:00
Ricardo Wurmus 5149aeb7e6
gnu: pigx: Update to 0.0.3. 
* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.3.
 2018-07-05 16:02:48 +02:00
Andreas Enge fe44e654b4
gnu: arb: Update to 2.13.0. 
* gnu/packages/algebra.scm (arb): Update to 2.13.0.
 2018-07-05 15:25:37 +02:00
Ricardo Wurmus aa388dc7b9
gnu: Add r-rots. 
* gnu/packages/bioconductor.scm (r-rots): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus f4235c0eca
gnu: Add r-glimma. 
* gnu/packages/bioconductor.scm (r-glimma): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus 5da0e14285
gnu: Add r-goseq. 
* gnu/packages/bioconductor.scm (r-goseq): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus 27c51606ae
gnu: Add r-ctc. 
* gnu/packages/bioconductor.scm (r-ctc): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus 2cc5110832
gnu: Add r-genelendatabase. 
* gnu/packages/bioconductor.scm (r-genelendatabase): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus fa69759963
gnu: Add r-argparse. 
* gnu/packages/cran.scm (r-argparse): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus 3629622bc8
gnu: Add r-findpython. 
* gnu/packages/cran.scm (r-findpython): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus aec7d6be70
gnu: r-getopt: Move from bioinformatics to cran. 
* gnu/packages/bioinformatics.scm (r-getopt): Move from here...
* gnu/packages/cran.scm (r-getopt): ...to here.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus 87ba9508e9
gnu: Add r-goplot. 
* gnu/packages/cran.scm (r-goplot): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus 64abd24517
gnu: Add r-biasedurn. 
* gnu/packages/cran.scm (r-biasedurn): New variable.
 2018-07-05 15:08:44 +02:00
Ludovic Courtès 5adb2df0a2
pack: Use guile-for-build for the target system. 
Until now, running "guix pack -s i686-linux" on an x86_64-linux machine,
for instance, would use an x86_64 guile for module derivations.  This
was OK until now, but would break when passing "--localstatedir" due to
the introduction of guile-sqlite3: we'd be using the i686 guile-sqlite3
along with the x86_64 guile.

* guix/scripts/pack.scm (guix-pack): Pass the 'system option from OPTS
to 'package-derivation'.
 2018-07-05 13:35:21 +02:00
Julien Lepiller 633b6b6197
nls: Update 'fr' translation. 2018-07-05 11:56:17 +02:00
Ludovic Courtès 63899cc774
doc: Update package count. 
* doc/guix.texi (Limitations): Update number.
 2018-07-05 11:54:23 +02:00
Ludovic Courtès 900e6d4051
doc: Mention ARM and AArch64 bootloaders. 
* doc/guix.texi (Bootloader Configuration): Mention ARM and AArch64.
Add missing uses of @code.
 2018-07-05 11:53:36 +02:00
Ludovic Courtès fc0e663f78
doc: Improve UEFI/BIOS bootloader documentation. 
Partly fixes <https://bugs.gnu.org/30312>.

* doc/guix.texi (Preparing for Installation): Add note on how to choose
between UEFI and BIOS.
(Using the Configuration System)[Bootloader]: New subsubsection.
(Bootloader Configuration): Expound on the bootloader type and target.
* gnu/system/examples/desktop.tmpl: Switch to UEFI.
* gnu/system/examples/bare-bones.tmpl: Explicitly mention "legacy" and
"BIOS" in the comments.
 2018-07-05 11:44:46 +02:00
Rutger Helling 0a562e46ff
gnu: qtox: Update to 1.16.1. 
* gnu/packages/messaging.scm (qtox): Update to 1.16.1.
 2018-07-05 08:35:01 +02:00
Tobias Geerinckx-Rice ac3accd44b
gnu: emacs-async: Update to 1.9.3. 
* gnu/packages/emacs.scm (emacs-async): Update to 1.9.3.
[source]: Update URI.
 2018-07-05 02:35:04 +02:00
Tobias Geerinckx-Rice 41770337d0
gnu: nml: Update to 0.4.5. 
* gnu/packages/game-development.scm (nml): Update to 0.4.5.
 2018-07-05 02:35:04 +02:00
Tobias Geerinckx-Rice df0fd7bfe0
gnu: nml: Use HTTPS home page. 
* gnu/packages/game-development.scm (nml)[home-page]: Use HTTPS.
 2018-07-05 02:35:04 +02:00
Tobias Geerinckx-Rice 4294f7dfea
gnu: r-lava: Update to 1.6.2. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.2.
 2018-07-05 02:35:03 +02:00
Tobias Geerinckx-Rice 8144badc76
gnu: r-broom: Update to 0.4.5. 
* gnu/packages/cran.scm (r-broom): Update to 0.4.5.
 2018-07-05 02:35:03 +02:00
Tobias Geerinckx-Rice 6e19d50e32
gnu: r-broom: Use HTTPS home page. 
* gnu/packages/cran.scm (r-broom)[home-page]: Use HTTPS.
 2018-07-05 02:35:03 +02:00
Tobias Geerinckx-Rice 142869f80f
Don't force colour in aliases. 
* gnu/system/shadow.scm (default-skeletons): Substitute ‘--color=auto’
for ‘--color’ (which implies ‘=always’) in aliases.
* doc/guix.texi (G-Expressions): Also adjust examples as that makes
more sense.
 2018-07-05 02:35:03 +02:00
Tobias Geerinckx-Rice 1e6191bb55
gnu: gtkwave: Mark up description. 
* gnu/packages/fpga.scm (gtkwave)[description]: Use @dfn.
 2018-07-05 02:35:02 +02:00
Tobias Geerinckx-Rice 0b04259184
gnu: exempi: Mark up description. 
* gnu/packages/freedesktop.scm (exempi)[description]: Use @dfn.
 2018-07-05 02:35:02 +02:00
Tobias Geerinckx-Rice fef7f8f692
gnu: keepalived: Update to 2.0.5. 
* gnu/packages/cluster.scm (keepalived): Update to 2.0.5.
 2018-07-05 02:35:02 +02:00
Tobias Geerinckx-Rice ba8528e759
gnu: inxi: Update to 3.0.14-1. 
* gnu/packages/admin.scm (inxi-minimal): Update to 3.0.14-1.
 2018-07-05 02:35:02 +02:00
Mark H Weaver d0d0f17768
gnu: linux-libre: Update to 4.17.4. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.4.
(%linux-libre-hash): Update hash.
 2018-07-04 19:30:19 -04:00
Mark H Weaver 75b27002eb
gnu: linux-libre@4.14: Update to 4.14.53. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.53.
(%linux-libre-4.14-hash): Update hash.
 2018-07-04 19:30:17 -04:00
Mark H Weaver d1b2611d22
gnu: linux-libre@4.9: Update to 4.9.111. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.111.
 2018-07-04 19:30:14 -04:00
Mark H Weaver a6a252e01d
gnu: linux-libre@4.4: Update to 4.4.139. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.139.
 2018-07-04 19:30:12 -04:00
Mark H Weaver cc78392923
gnu: Remove linux-libre@4.1. 
* gnu/packages/linux.scm (linux-libre-4.1): Remove variable.
* gnu/packages/aux-files/linux-libre/4.1-i686.conf,
gnu/packages/aux-files/linux-libre/4.1-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove them.
 2018-07-04 19:30:06 -04:00
Ricardo Wurmus 08d1a8b138
gnu: pigx-scrnaseq: Update to 0.0.6. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.6.
[arguments]: Remove "wrap-executable" phase.
 2018-07-05 00:52:31 +02:00
Ludovic Courtès a043b5b81a
services: mingetty: Use '--nohangup'. 
See the discussion at
<https://lists.gnu.org/archive/html/guix-devel/2018-07/msg00049.html>.

* gnu/services/base.scm (mingetty-shepherd-service): Pass "--nohangup"
to mingetty.
 2018-07-05 00:14:01 +02:00
Ludovic Courtès 9fd877247d
system: Default .bashrc uses '--color=auto' for grep and ls. 
Reported by Tobias Geerinckx-Rice <me@tobias.gr>
and Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.

* gnu/system/shadow.scm (default-skeletons)["bashrc"]: Use
'--color=auto' instead of '--color'.
 2018-07-04 21:52:23 +02:00
Julien Lepiller 137bd98353
gnu: maven: Fix maven crash when compiling java8 code. 
* gnu/packages/maven.scm (maven)[arguments]: Configure classloading
properly instead of adding jars to maven's classpath.
 2018-07-04 21:29:23 +02:00
Julien Lepiller 892a5647de
gnu: maven-compat: Fix test failure. 
* gnu/packages/maven.scm (maven-compat)[arguments]: Add
recreate-removed-jar phase.
 2018-07-04 21:09:56 +02:00
Julien Lepiller d440df618d
gnu: maven-artifact: Update to 3.5.4. 
* gnu/packages/maven.scm (maven-artifact): Update to 3.5.4.
(maven-core)[arguments]: Use new version.
 2018-07-04 21:08:08 +02:00
Julien Lepiller 8d66cda690
gnu: maven-wagon-provider-api: Update to 3.1.0. 
* gnu/packages/maven.scm (maven-wagon-provider-api): Update to 3.1.0.
 2018-07-04 21:06:24 +02:00
Julien Lepiller a70182b099
gnu: java-plexus-compiler-api: Update to 2.8.4. 
* gnu/packages/java.scm (java-plexus-compiler-api): Update to 2.8.4.
 2018-07-04 21:05:36 +02:00
Julien Lepiller ff5cd137ef
nls: Update 'fr' translation. 2018-07-04 21:03:10 +02:00