Ricardo Wurmus
|
c1c9cc664b
|
gnu: Add pigx.
* gnu/packages/bioinformatics.scm (pigx): New variable.
|
2018-03-16 15:40:31 +01:00 |
|
Ricardo Wurmus
|
fe52a215e5
|
gnu: pigx-rnaseq: Disable memory hungry test.
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase to
disable a memory hungry test.
|
2018-03-16 15:40:31 +01:00 |
|
Ricardo Wurmus
|
46264c73a6
|
gnu: Add pigx-scrnaseq.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): New variable.
|
2018-03-16 11:15:04 +01:00 |
|
Ricardo Wurmus
|
b44437c549
|
gnu: kentutils: Build with mariadb.
* gnu/packages/bioinformatics.scm (kentutils)[inputs]: Replace mysql with
mariadb.
|
2018-03-16 10:01:07 +01:00 |
|
Leo Famulari
|
32cbbac11a
|
gnu: Add Diversitree.
* gnu/packages/bioinformatics.scm (r-diversitree): New variable.
|
2018-03-15 10:57:51 -04:00 |
|
Ricardo Wurmus
|
fb94174fc3
|
gnu: Add pigx-bsseq.
* gnu/packages/bioinformatics.scm (pigx-bsseq): New variable.
|
2018-03-11 20:01:53 +01:00 |
|
Ricardo Wurmus
|
531afc8a89
|
gnu: Add pigx-chipseq.
* gnu/packages/bioinformatics.scm (pigx-chipseq): New variable.
|
2018-03-11 20:01:53 +01:00 |
|
Ricardo Wurmus
|
a539ad867d
|
gnu: r-rhdf5lib: Make build reproducible.
* gnu/packages/bioinformatics.scm (r-rhdf5lib)[arguments]: Remove timestamp
and host system kernel version.
|
2018-03-09 11:40:59 +01:00 |
|
Ricardo Wurmus
|
22a0c65969
|
gnu: Add r-phangorn.
* gnu/packages/bioinformatics.scm (r-phangorn): New variable.
|
2018-03-08 23:31:56 +01:00 |
|
Ricardo Wurmus
|
53cc59a1d8
|
gnu: r-ape: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-ape): Move from here...
* gnu/packages/cran.scm (r-ape): ...to here.
|
2018-03-08 23:31:55 +01:00 |
|
Ricardo Wurmus
|
84c195e505
|
gnu: r-dropbead: Update to 0-2.d746c6f.
* gnu/packages/bioinformatics.scm (r-dropbead): Update to 0-2.d746c6f.
|
2018-03-08 18:53:49 +01:00 |
|
Ricardo Wurmus
|
0bdd5b8ab7
|
gnu: Add pigx-rnaseq.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): New variable.
|
2018-03-07 23:25:36 +01:00 |
|
Ricardo Wurmus
|
c072cf57b9
|
gnu: samtools: Update to 1.7.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
|
2018-03-06 16:03:04 +01:00 |
|
Ricardo Wurmus
|
727d847980
|
gnu: htslib: Update to 1.7.
* gnu/packages/bioinformatics.scm (htslib): Update to 1.7.
[arguments]: Remove field.
|
2018-03-06 16:03:04 +01:00 |
|
Ricardo Wurmus
|
e325c89076
|
gnu: r-rhdf5: Make build reproducible.
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and
host system information from settings file.
|
2018-03-06 16:03:04 +01:00 |
|
Efraim Flashner
|
da49d13710
|
gnu: piranha: Declare a source file-name.
* gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source
file-name.
|
2018-03-04 12:05:13 +02:00 |
|
Efraim Flashner
|
d9a069c2d9
|
gnu: libdivsufsort: Declare a source file-name.
* gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a
source file-name.
|
2018-03-04 12:05:13 +02:00 |
|
Efraim Flashner
|
5110672474
|
gnu: seek: Declare a source file-name.
* gnu/packages/bioinformatics.scm (seek)[source]: Declare a source
file-name.
|
2018-03-04 12:05:13 +02:00 |
|
Efraim Flashner
|
b1d4026dfb
|
gnu: r-dropbead: Declare a source file-name.
* gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source
file-name.
|
2018-03-04 12:05:10 +02:00 |
|
Ricardo Wurmus
|
1adeef3194
|
gnu: Add dropseq-tools.
* gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
|
2018-03-03 21:28:05 +01:00 |
|
Ricardo Wurmus
|
72299db9fe
|
gnu: Add java-picard-2.10.3.
* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
|
2018-03-03 21:28:02 +01:00 |
|
Ricardo Wurmus
|
719fa958f3
|
gnu: Add java-htsjdk-2.10.1.
* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
|
2018-03-03 21:27:59 +01:00 |
|
Ricardo Wurmus
|
9a599c17b7
|
gnu: Add java-htsjdk-latest.
* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
|
2018-03-03 21:27:57 +01:00 |
|
Ricardo Wurmus
|
9ac7db1830
|
gnu: Add java-biojava-alignment-4.0.
* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
|
2018-03-03 21:27:56 +01:00 |
|
Ricardo Wurmus
|
5528f9e8f0
|
gnu: Add java-biojava-phylo-4.0.
* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.
|
2018-03-03 21:27:53 +01:00 |
|
Ricardo Wurmus
|
e44da58c16
|
gnu: Add java-biojava-core-4.0.
* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.
|
2018-03-03 21:27:51 +01:00 |
|
Ricardo Wurmus
|
22c09c335b
|
gnu: Add java-biojava-alignment.
* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.
|
2018-03-03 21:27:48 +01:00 |
|
Ricardo Wurmus
|
b28c803708
|
gnu: Add java-biojava-phylo.
* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
|
2018-03-03 21:27:46 +01:00 |
|
Ricardo Wurmus
|
10645b9212
|
gnu: Add java-forester-1.005.
* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable.
|
2018-03-03 21:27:44 +01:00 |
|
Ricardo Wurmus
|
f09d16e594
|
gnu: Add java-forester.
* gnu/packages/bioinformatics.scm (java-forester): New variable.
|
2018-03-03 21:27:41 +01:00 |
|
Ricardo Wurmus
|
5fef15e506
|
gnu: Add java-biojava-core.
* gnu/packages/bioinformatics.scm (java-biojava-core): New variable.
|
2018-03-03 21:27:36 +01:00 |
|
Ricardo Wurmus
|
bd975831c6
|
gnu: Add fastqc.
* gnu/packages/bioinformatics.scm (fastqc): New variable.
|
2018-03-03 21:21:48 +01:00 |
|
Ricardo Wurmus
|
3ede1550e8
|
gnu: cutadapt: Update to 1.16.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16.
[source]: Fetch via git.
[arguments]: Remove.
[native-inputs]: Replace python-nose with python-pytest.
|
2018-03-02 23:44:16 +01:00 |
|
Ricardo Wurmus
|
9aaf2813e2
|
gnu: r-scran: Update to 1.6.8.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8.
|
2018-03-01 21:28:53 +01:00 |
|
Ricardo Wurmus
|
6a0e13906b
|
gnu: r-wgcna: Update to 1.63.
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63.
|
2018-03-01 21:28:53 +01:00 |
|
Ricardo Wurmus
|
61cbd49b30
|
gnu: r-topgo: Update to 2.30.1.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1.
|
2018-03-01 21:28:53 +01:00 |
|
Ricardo Wurmus
|
535014ce60
|
gnu: r-genomicranges: Update to 1.30.3.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3.
|
2018-03-01 21:28:53 +01:00 |
|
Ricardo Wurmus
|
eb8971b742
|
gnu: r-limma: Update to 3.34.9.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.
|
2018-03-01 21:28:53 +01:00 |
|
Ricardo Wurmus
|
22d96920d3
|
gnu: r-edger: Update to 3.20.9.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.
|
2018-03-01 21:28:53 +01:00 |
|
Ricardo Wurmus
|
99e4b11d81
|
gnu: r-shortread: Update to 1.36.1.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
|
2018-03-01 21:28:53 +01:00 |
|
Ricardo Wurmus
|
b180893289
|
gnu: r-dexseq: Update to 1.24.3.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.
|
2018-03-01 21:28:52 +01:00 |
|
Ricardo Wurmus
|
65c9d25739
|
gnu: r-qtl: Update to 1.42-8.
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.42-8.
|
2018-02-22 11:18:03 +01:00 |
|
Ricardo Wurmus
|
79c6af13d0
|
gnu: r-delayedmatrixstats: Update to 1.0.3.
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.0.3.
|
2018-02-19 09:53:05 +01:00 |
|
Ricardo Wurmus
|
59b2864d6c
|
gnu: r-scater: Update to 1.6.3.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.6.3.
|
2018-02-19 09:53:05 +01:00 |
|
Ricardo Wurmus
|
d578278e35
|
gnu: r-gviz: Update to 1.22.3.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.3.
|
2018-02-19 09:53:05 +01:00 |
|
Ricardo Wurmus
|
ca7855fcd2
|
gnu: r-gprofiler: Update to 0.6.4.
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.4.
|
2018-02-19 09:53:04 +01:00 |
|
Ricardo Wurmus
|
8877ab432e
|
gnu: r-ensembldb: Update to 2.2.2.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.2.2.
|
2018-02-19 09:53:04 +01:00 |
|
Ricardo Wurmus
|
ebec98ae1d
|
gnu: r-seurat: Update to 2.2.1.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.2.1.
[propagated-inputs]: Remove r-nmf; add r-metap.
|
2018-02-19 09:53:04 +01:00 |
|
Ricardo Wurmus
|
3118b28644
|
gnu: r-qtl: Update to 1.42-7.
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.42-7.
|
2018-02-19 09:53:04 +01:00 |
|
Ricardo Wurmus
|
824c200475
|
gnu: r-genomicranges: Update to 1.30.2.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.2.
|
2018-02-19 09:53:04 +01:00 |