658ab21d2e
gnu: Add r-scater.
...
* gnu/packages/bioinformatics.scm (r-scater): New variable.
Co-authored-by: Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com>
2018-02-12 15:29:43 +01:00
6fb1dc17a3
gnu: Add r-singlecellexperiment.
...
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): New variable.
2018-02-12 15:29:43 +01:00
9ec0898824
gnu: Add r-beachmat.
...
* gnu/packages/bioinformatics.scm (r-beachmat): New variable.
2018-02-12 15:29:43 +01:00
748e9f163a
gnu: Add r-rhdf5lib.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): New variable.
2018-02-12 15:29:43 +01:00
d2c0f03037
gnu: Add r-shinydashboard.
...
* gnu/packages/web.scm (r-shinydashboard): New variable.
Co-authored-by: Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com>
2018-02-12 15:29:43 +01:00
4dba441c2a
gnu: hdf5: Build with -fPIC.
...
* gnu/packages/maths.scm (hdf5)[arguments]: Add -fPIC to CFLAGS and CXXFLAGS.
2018-02-12 15:29:43 +01:00
ecae16bec5
gnu: emacs-emms-player-mpv: Update to 0.0.13.
...
* gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.13.
2018-02-12 18:49:54 +05:30
eb6b471b44
gnu: emacs-ob-ipython: Declare a source file-name.
...
* gnu/packages/emacs.scm (emacs-ob-ipython)[source]: Add 'file-name field.
2018-02-12 11:46:43 +02:00
b87047e04b
gnu: emacs-d-mode: Declare a source file-name.
...
* gnu/packages/emacs.scm (emacs-d-mode)[source]: Add 'file-name field.
2018-02-12 11:46:43 +02:00
995b706931
gnu: guile-emacs: Declare a source file-name.
...
* gnu/packages/emacs.scm (guile-emacs)[source]: Add 'file-name field.
2018-02-12 11:46:39 +02:00
23101355fd
gnu: vifm: Update to 0.9.1.
...
* gnu/packages/vim.scm (vifm): Update to 0.9.1.
2018-02-11 20:04:44 +02:00
b4c9a3173d
gnu: libreoffice: Update to 5.4.5.1 [CVE-2018-6871].
...
* gnu/packages/check.scm (cppunit-1.14): New public variable.
* gnu/packages/libreoffice.scm (xmlsec-src-libreoffice): Remove variable.
(libreoffice): Update to 5.4.5.1.
[native-inputs]: Change CPPUNIT to CPPUNIT-1.14. Remove AUTOCONF and AUTOMAKE.
[inputs]: Add GPGME, XMLSEC-NSS and LIBLTDL. Remove XMLSEC-SRC-LIBREOFFICE.
Replace LIBJPEG with LIBJPEG-TURBO.
[arguments]: Remove xmlsec code from PREPARE-SRC-PHASE. Make sure GPGME++
headers are found. Add workaround for <https://bugs.gentoo.org/641812 >. Add
"--disable-pdfium" to #:configure-flags.
* gnu/packages/xml.scm (xmlsec-nss): New public variable.
2018-02-11 16:29:49 +01:00
f1d7e14a1b
gnu: libmd: Update to 1.0.0.
...
* gnu/packages/crypto.scm (libmd): Update to 1.0.0.
[source](uri): Add freedesktop.org mirror.
2018-02-11 16:29:04 +01:00
f62dcba42d
gnu: gmtp: Update to 1.3.11.
...
* gnu/packages/libusb.scm (gmtp): Update to 1.3.11.
2018-02-11 10:20:41 -05:00
2ab575298e
gnu: w3m: Update to 0.5.3+git20180125 [fixes CVE-2018-{6196,6197,6198}].
...
* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20180125.
2018-02-11 09:59:41 -05:00
c275462025
mailmap: Adjust entries for ng0.
...
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-02-11 09:44:11 -05:00
e720329d5f
gnu: python-pycanberra: Use new URLs.
...
* gnu/packages/libcanberra.scm (python-pycanberra)[source]: Use new URL.
[home-page]: Update URL.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-02-11 09:44:11 -05:00
8226304b17
gnu: propeller-gcc: Fix build.
...
* gnu/packages/embedded.scm (propeller-gcc)[native-inputs]: Use GCC 4.9.
2018-02-11 11:42:09 +01:00
aba3e482b9
gnu: Add r-hdf5array.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): New variable.
2018-02-11 11:42:09 +01:00
a7fb298665
Merge branch 'master' into core-updates
2018-02-11 04:05:07 -05:00
31c7002b46
gnu: libtasn1: Fix CVE-2018-6003.
...
* gnu/packages/patches/libtasn1-CVE-2018-6003.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
2018-02-10 23:01:56 -05:00
79cf105304
gnu: libtiff: Fix CVE-2017-{9935,11335,18013}.
...
* gnu/packages/patches/libtiff-CVE-2017-9935.patch,
gnu/packages/patches/libtiff-CVE-2017-11335.patch,
gnu/packages/patches/libtiff-CVE-2017-18013.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff)[replacement]: New field.
(libtiff/fixed): New variable.
2018-02-10 22:58:19 -05:00
6a517548e6
gnu: loksh: Update to 6.2.
...
* gnu/packages/shells.scm (loksh): Update to 6.2.
2018-02-11 03:06:57 +01:00
0de57b446c
gnu: global: Update to 6.6.2.
...
* gnu/packages/code.scm (global): Update to 6.6.2.
2018-02-11 01:35:47 +01:00
6577611b2b
gnu: acpica: Update to 20180209.
...
* gnu/packages/admin.scm (acpica): Update to 20180209.
2018-02-11 01:22:32 +01:00
8067e7bf2b
gnu: youtube-dl: Update to 2018.02.08.
...
* gnu/packages/video.scm (youtube-dl): Update to 2018.02.08.
2018-02-11 00:16:19 +01:00
6730d895d3
gnu: knights: Fix build.
...
* gnu/packages/games.scm (knights)[native-inputs]: Add pkg-config.
2018-02-10 23:53:34 +01:00
9da87e4cc6
gnu: perl-net-dns: Update to 1.15.
...
* gnu/packages/networking.scm (perl-net-dns): Update to 1.15.
2018-02-10 23:39:37 +01:00
e98d1d2a64
gnu: exfat-utils: Update to 1.2.8.
...
* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.8.
2018-02-10 23:03:51 +01:00
ed3094cee9
gnu: unibilium: Update to 1.2.1.
...
* gnu/packages/terminals.scm (unibilium): Update to 1.2.1.
2018-02-10 23:03:50 +01:00
354c493fb8
gnu: exim: Update to 4.90.1 [fixes CVE-2018-6789].
...
* gnu/packages/mail.scm (exim): Update to 4.90.1.
[source]: Use HTTPS URLs.
2018-02-10 13:47:58 -05:00
73a1f10a80
gnu: Add java-xmlunit-legacy.
...
* gnu/packages/java.scm (java-xmlunit-legacy): New variable.
2018-02-10 19:04:44 +01:00
7ac4f054e7
gnu: Add java-xmlunit.
...
* gnu/packages/java.scm (java-xmlunit): New variable.
2018-02-10 19:04:38 +01:00
e06bf42811
gnu: Add java-jline.
...
* gnu/packages/java.scm (java-jline): New variable.
2018-02-10 19:04:36 +01:00
5ee7b02f56
gnu: Add java-xstream.
...
* gnu/packages/xml.scm (java-xstream): New variable.
2018-02-10 19:04:32 +01:00
a5ec8a5c6b
gnu: Add java-jdom2.
...
* gnu/packages/xml.scm (java-jdom2): New variable.
2018-02-10 19:04:29 +01:00
b8798817a1
gnu: Add java-jettison.
...
* gnu/packages/xml.scm (java-jettison): New variable.
2018-02-10 19:04:27 +01:00
4c7759f027
gnu: Add java-stax.
...
* gnu/packages/xml.scm (java-stax): New variable.
2018-02-10 19:04:25 +01:00
3058d8ec56
gnu: Add java-kxml2.
...
* gnu/packages/xml.scm (java-kxml2): New variable.
2018-02-10 19:04:23 +01:00
be0524f472
gnu: Add java-jaxen.
...
* gnu/packages/xml.scm (java-jaxen): New variable.
2018-02-10 19:04:21 +01:00
605c23df5b
gnu: Add java-dom4j.
...
gnu/packages/xml.scm (java-dom4j): New variable.
2018-02-10 19:04:19 +01:00
9421f68224
gnu: Add java-xmlpull2.
...
* gnu/packages/xml.scm (java-xmlpull2): New variable.
2018-02-10 19:04:16 +01:00
82d7d4e1c8
gnu: Add java-xpp3.
...
gnu/packages/xml.scm (java-xpp3): New variable.
2018-02-10 19:04:14 +01:00
96f31935ec
gnu: Add java-xsdlib.
...
* gnu/packages/xml.scm (java-xsdlib): New variable.
2018-02-10 19:04:12 +01:00
5552080de3
gnu: Add java-xom.
...
* gnu/packages/xml.scm (java-xom): New variable.
2018-02-10 19:04:10 +01:00
7eae94d86a
gnu: Add java-jaxen-bootstrap.
...
* gnu/packages/xml.scm (java-jaxen-bootstrap): New variable.
2018-02-10 19:04:08 +01:00
6d0368eb84
gnu: Add java-xerces.
...
* gnu/packages/java.scm (java-xerces): New variable.
* gnu/packages/patches/java-xerces-bootclasspath.patch: New file.
* gnu/packages/patches/java-xerces-build_dont_unzip.patch: New file.
* gnu/packages/patches/java-xerces-xjavac_taskdef.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
2018-02-10 19:04:04 +01:00
9a86ee788d
gnu: Add java-apache-xml-commons-resolver.
...
* gnu/packages/xml.scm (java-apache-xml-commons-resolver): New variable.
2018-02-10 19:04:02 +01:00
1a17ca2624
gnu: Add java-jaxp.
...
* gnu/packages/xml.scm (java-jaxp): New variable.
2018-02-10 19:04:00 +01:00
0a574d7bf7
licenses: Add W3C license.
...
* gnu/license.scm (w3c): New variable.
2018-02-10 19:03:57 +01:00
Ricardo Wurmus