535014ce60
gnu: r-genomicranges: Update to 1.30.3.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3.
2018-03-01 21:28:53 +01:00
eb8971b742
gnu: r-limma: Update to 3.34.9.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.
2018-03-01 21:28:53 +01:00
22d96920d3
gnu: r-edger: Update to 3.20.9.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.
2018-03-01 21:28:53 +01:00
99e4b11d81
gnu: r-shortread: Update to 1.36.1.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
2018-03-01 21:28:53 +01:00
b180893289
gnu: r-dexseq: Update to 1.24.3.
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* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.
2018-03-01 21:28:52 +01:00
360ea2bbd5
gnu: efl: Use separate "include" output.
...
* gnu/packages/enlightenment.scm (efl)[outputs]: Add 'include' output.
2018-03-01 22:19:37 +02:00
40a7997e63
gnu: efl: Update to 1.20.7.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.20.7.
2018-03-01 22:18:58 +02:00
643817e445
gnu: Add patchmatrix.
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* gnu/packages/music.scm (patchmatrix): New variable.
2018-03-01 21:12:59 +01:00
1debc5b9d2
gnu: ghc-uuid: Fix build.
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* gnu/packages/haskell.scm (ghc-uuid)[arguments]: Allow building with a newer
version of QuickCheck.
2018-03-01 21:11:43 +01:00
04e7b1e7f9
gnu: golly: Fix source url.
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* gnu/packages/games.scm (golly): Fix source url.
2018-03-01 11:19:56 -06:00
52fb59ef25
gnu: imagemagick: Update to 6.9.9-36.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-36.
2018-03-01 17:40:49 +01:00
fe29681717
gnu: libe-book: Update to 0.1.3.
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* gnu/packages/libreoffice.scm (libe-book): Update to 0.1.3.
[propagated-inputs]: Add LIBLANGTAG.
2018-03-01 17:40:49 +01:00
814bc35d55
gnu: libabw: Update to 0.1.2.
...
* gnu/packages/libreoffice.scm (libabw): Update to 0.1.2.
2018-03-01 17:40:48 +01:00
c7cc1fcbe0
gnu: libpagemaker: Update to 0.0.4.
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* gnu/packages/libreoffice.scm (libpagemaker): Update to 0.0.4.
[source](uri): Use HTTPS.
2018-03-01 17:40:48 +01:00
9ed31fca81
gnu: libmspub: Update to 0.1.4.
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* gnu/packages/libreoffice.scm (libmspub): Update to 0.1.4.
[source](uri): Use HTTPS.
2018-03-01 17:40:48 +01:00
789445a10a
gnu: xorgproto: Update to 2018.4.
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* gnu/packages/xorg.scm (xorgproto): Update to 2018.4.
2018-03-01 17:40:48 +01:00
21b5fc253e
gnu: cuirass: Update to aa4c778.
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* gnu/packages/ci.scm (cuirass): Update to aa4c778.
2018-03-01 17:38:55 +01:00
b402f4ee34
import: cpan: Drop "v" prefix from version strings.
...
Fixes <https://bugs.gnu.org/30641 >.
Reported by Oleg Pykhalov <go.wigust@gmail.com>.
* guix/import/cpan.scm (cpan-version): Drop the "v" prefix when it is
there.
2018-03-01 14:54:55 +01:00
35e2d0cfae
gnu: nautilus: Use meson-build-system, update to 3.26.2.
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* gnu/packages/gnome.scm (nautilus): Update to 3.26.2.
[build-system]: Use meson-build-system.
[native-inputs]: Add desktop-file-utils and gtk+:bin.
[inputs]: Add libselinux.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-01 14:00:21 +01:00
435603a1d6
profiles: 'manifest-add' truly deletes duplicate entries.
...
Fixes <https://bugs.gnu.org/30569 >.
Reported by Andreas Enge <andreas@enge.fr>.
* guix/profiles.scm (manifest-add): Don't append ENTRIES as is.
Instead, cons each element of ENTRIES as we fold over it.
Remove unneeded ellispes in 'match' patterns.
2018-03-01 14:00:21 +01:00
acb59d99db
gnu: Fix Borg crashes with Python msgpack > 0.5
...
The Python msgpack library changed its name, but borg (and possibly
other packages) still uses the old name.
Fixes <https://bugs.gnu.org/30662 >.
* gnu/packages/python.scm (python-msgpack-transitional): New variable.
* gnu/packages/backup.scm (borg)[inputs]: Use it.
2018-02-28 23:43:23 -05:00
2adfe819f0
gnu: Remove duplicate definition of emacs-esxml.
...
* gnu/packages/emacs.scm (emacs-esxml): Remove.
2018-02-28 23:05:06 +01:00
c1d2236569
gnu: Remove emacs-nov.
...
The package already exists with the name "emacs-nov-el".
* gnu/packages/emacs.scm (emacs-nov): Remove.
2018-02-28 23:05:06 +01:00
201084ac1f
gnu: java-bouncycastle-bcpkix: Use invoke.
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* gnu/packages/java.scm (java-bouncycastle-bcpkix)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
9be4b9fa58
gnu: java-bouncycastle-bcprov: Use invoke.
...
* gnu/packages/java.scm (java-bouncycastle-bcprov)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
1b6bc51675
gnu: java-lz4: Use invoke.
...
* gnu/packages/java.scm (java-lz4)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
ec32bc9860
gnu: antlr3-3.1: Remove version from package name.
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* gnu/packages/java.scm (antlr3-3.1)[name]: Remove.
[arguments]: Adjust accordingly.
2018-02-28 23:05:06 +01:00
13f38d31a4
gnu: antlr3-3.1: Use invoke.
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* gnu/packages/java.scm (antlr3-3.1)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
e85c1bf6cd
gnu: java-jansi-native: Simplify.
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* gnu/packages/java.scm (java-jansi-native)[arguments]: Use "invoke"; remove
useless "mkdir-p".
2018-02-28 23:05:06 +01:00
3d6925ef51
gnu: java-jansi-native: Fix description.
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* gnu/packages/java.scm (java-jansi-native)[description]: Replace placeholder
text with an actual description.
2018-02-28 23:05:06 +01:00
6338ea9a88
gnu: java-hawtjni: Simplify build phases.
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* gnu/packages/java.scm (java-hawtjni)[arguments]: Use "invoke" instead of
"system*"; use "install-file" instead of "mkdir-p" and "copy-file".
2018-02-28 23:05:05 +01:00
080d0b605a
gnu: java-commons-jexl-2: Use invoke.
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* gnu/packages/java.scm (java-commons-jexl-2)[arguments]: Use invoke.
2018-02-28 23:05:05 +01:00
8c7d32e07c
gnu: java-jnacl: Do not prefix jar with "java-".
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* gnu/packages/java.scm (java-jnacl)[arguments]: Rename jar to "jnacl.jar".
2018-02-28 23:05:05 +01:00
3e87923a67
gnu: java-jnacl: Update to 0.1.0-2.094e819.
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* gnu/packages/java.scm (java-jnacl): Update to 0.1.0-2.094e819.
2018-02-28 23:05:05 +01:00
8333c206a9
gnu: java-jnacl: Simplify build phase.
...
* gnu/packages/java.scm (java-jnacl)[arguments]: Simplify "fix-tests" phase.
2018-02-28 23:05:05 +01:00
e158642816
gnu: java-jnacl: Correct license.
...
* gnu/packages/java.scm (java-jnacl)[license]: Change to BSD-2.
2018-02-28 23:05:05 +01:00
602f54f436
gnu: java-jnacl: Use invoke.
...
* gnu/packages/java.scm (java-jnacl)[arguments]: Use "invoke".
2018-02-28 23:05:05 +01:00
f201b18ed7
gnu: Add java-ecj-3.5.
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* gnu/packages/java.scm (java-ecj-3.5): New variable.
2018-02-28 23:05:05 +01:00
c1cb857645
gnu: Add java-ecj-3.
...
* gnu/packages/java.scm (java-ecj-3): New variable.
2018-02-28 23:05:05 +01:00
9d43579f2d
gnu: dovecot: Update to 2.3.0.1 [fixes CVE-2017-14461].
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* gnu/packages/mail.scm (dovecot): Update to 2.3.0.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/dovecot-CVE-2017-15132.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-28 22:58:23 +01:00
4321aeb6d3
gnu: html-xml-utils: Update to 7.6.
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* gnu/packages/xml.scm (html-xml-utils): Update to 7.6.
2018-02-28 22:58:23 +01:00
0828bd82bd
gnu: libftdi: Update to 1.4.
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* gnu/packages/libftdi.scm (libftdi): Update to 1.4.
2018-02-28 22:58:23 +01:00
30bbb86ae3
gnu: git-remote-gcrypt: Update to 1.0.2.
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* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.0.2.
2018-02-28 22:58:23 +01:00
aa08ab38cd
gnu: dropbear: Update to 2018.76.
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* gnu/packages/ssh.scm (dropbear): Update to 2018.76.
2018-02-28 22:58:23 +01:00
649eb8b567
gnu: Add sala.
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* gnu/packages/password-utils.scm (sala): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-02-28 22:47:48 +01:00
3c14e7e6bb
linux-modules: Use 'load-linux-module/fd'.
...
This should be more efficient than loading the whole thing in user space.
* gnu/build/linux-modules.scm (load-linux-module*): Use
'load-linux-module/fd' instead of 'load-linux-module'. Remove 'slurp'.
2018-02-28 22:47:48 +01:00
4c853b7c11
gnu: guile-static-stripped: Add 'finit_module' wrapper.
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* gnu/packages/patches/guile-linux-syscalls.patch: Add
'load-linux-module/fd' procedure.
2018-02-28 22:47:48 +01:00
63e48300d1
gnu: guile-static-stripped: Remove dependency on bash-minimal.
...
Previously guile-static-stripped, which is embedded in the initrd, would
depend on 'bash-minimal' and 'glibc'; the closure size was 77 MiB. Now
the closure size is down to 45.7 MiB.
Reported by Danny Milosavljevic <dannym@scratchpost.org> in
<https://lists.gnu.org/archive/html/guix-devel/2018-02/msg00505.html >.
* gnu/packages/make-bootstrap.scm (%guile-static): Remove the
'pre-configure' phase.
(%guile-static-stripped)[arguments]: Add #:allowed-references.
2018-02-28 22:47:48 +01:00
297602513b
build-system/trivial: Add support for #:allowed-references.
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* guix/build-system/trivial.scm (lower): Add #:allowed-references and
keep it in the 'arguments' field.
(trivial-build): Add #:allowed-references. Add
'canonicalize-reference'. Pass #:allowed-references to
'build-expression->derivation'.
(trivial-cross-build): Likewise.
* tests/packages.scm ("trivial with #:allowed-references"): New test.
2018-02-28 22:47:42 +01:00
bcc6551083
gnu: ccl: Patch absolute file-name.
...
* gnu/packages/lisp.scm (ccl)[arguments]: In 'pre-build add substitution
for /bin/pwd.
2018-02-28 22:11:21 +02:00
Ricardo Wurmus