f1fe5283c9
gnu: Add r-with-recommended-packages.
...
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
2017-03-17 10:14:02 +01:00
aeb64f3cb2
gnu: r: Do not build recommended packages.
...
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
2017-03-17 10:14:02 +01:00
4b005c7a75
gnu: Add r-spatial.
...
* gnu/packages/statistics.scm (r-spatial): New variable.
2017-03-17 10:14:01 +01:00
567b154fb0
gnu: r-rpart: Move to the set of recommended packages.
...
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
2017-03-17 10:14:01 +01:00
a5a343656b
gnu: r-nnet: Move to set of recommended R packages.
...
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
2017-03-17 10:14:01 +01:00
ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
248f65269a
gnu: Add r-nlme.
...
* gnu/packages/statistics.scm (r-nlme): New variable.
2017-03-17 10:14:01 +01:00
69e14f9ec7
gnu: r-matrix: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
060c12868b
gnu: r-lattice: Move to other recommended R packages.
...
* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
2017-03-17 10:14:01 +01:00
e88bad6ddb
gnu: Add r-kernsmooth.
...
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2017-03-17 10:14:00 +01:00
69fddd2d6e
gnu: Add r-foreign.
...
* gnu/packages/statistics.scm (r-foreign): New variable.
2017-03-17 10:14:00 +01:00
c1999c5910
gnu: Add r-codetools.
...
* gnu/packages/statistics.scm (r-codetools): New variable.
2017-03-17 10:14:00 +01:00
a27bfb8484
gnu: Add r-cluster.
...
* gnu/packages/statistics.scm (r-cluster): New variable.
2017-03-17 10:14:00 +01:00
7489258751
gnu: Add r-class.
...
* gnu/packages/statistics.scm (r-class): New variable.
2017-03-17 10:14:00 +01:00
c7e80a7e0d
gnu: Add r-mass.
...
* gnu/packages/statistics.scm (r-mass): New variable.
2017-03-17 10:14:00 +01:00
8f0069170c
gnu: Add r-boot.
...
* gnu/packages/statistics.scm (r-boot): New variable.
2017-03-17 10:14:00 +01:00
54d556bdd7
gnu: youtube-dl: Update to 2017.03.16.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.16.
2017-03-17 03:11:35 +01:00
3078821d13
gnu: asciidoc: Use local docbook-xml package.
...
* gnu/packages/documentation.scm (asciidoc)[inputs]: Add docbook-xml.
[arguments]: Add 'make-local-docbook-xml' phase.
2017-03-16 21:35:50 -04:00
f9cdf1c15b
gnu: Add knot.
...
* gnu/packages/dns.scm (knot): New variable.
2017-03-17 02:32:01 +01:00
754667f0eb
gnu: Add liburcu.
...
* gnu/packages/datastructures.scm (liburcu): New variable.
2017-03-17 02:32:00 +01:00
366efcb2fb
gnu: dns: Fix typo and use @dfn in descriptions.
...
* gnu/packages/dns.scm (bind)[description]: Use @dfn to expand acronyms.
(yadifa)[description]: Likewise, and fix a typo.
2017-03-17 02:32:00 +01:00
2ec5ba859f
gnu: linux-libre: Update to 4.10.3.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.3.
(%linux-libre-hash): Update hash.
2017-03-16 19:40:40 -04:00
2044306f05
gnu: linux-libre@4.4: Update to 4.4.54.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.54.
2017-03-16 19:40:39 -04:00
bcc5b74173
gnu: linux-libre@4.9: Update to 4.9.15.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.15.
2017-03-16 19:40:39 -04:00
49ac6dbb0a
gnu: qemu: Fix CVE-2017-{2620,2630}.
...
* gnu/packages/patches/qemu-CVE-2017-2620.patch,
gnu/packages/patches/qemu-CVE-2017-2630.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Use them.
2017-03-16 19:40:08 -04:00
1e5b8beeff
gnu: virglrenderer: Fix CVE-2017-6386.
...
* gnu/packages/patches/virglrenderer-CVE-2017-6386.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (virglrenderer)[source]: Use it.
2017-03-16 19:39:55 -04:00
34d60c49cb
services: connman: Rework service.
...
* gnu/services/networking.scm (connman-service): Remove.
(<connman-configuration>): New record specifying the package
to be used (connman) and whether vpn plugin shall be
disabled (disable-vpn?).
(connman-configuration): New exported variable.
(connman-configuration?): New exported variable.
(connman-service-type): Export it.
* doc/guix.texi (Networking Services): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-16 22:50:14 +01:00
2c715a9223
gnu: password-store: Fix compatibility with GnuPG 2.1.19.
...
* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-16 19:58:43 +01:00
2441c28414
gnu: Add r-seurat.
...
* gnu/packages/bioinformatics.scm (r-seurat): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-03-16 14:54:58 +01:00
79849358f8
gnu: sra-tools: Update to 2.8.2-1.
...
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.8.2-1.
[arguments]: Add DEFAULT_CRT and DEFAULT_KFG to make flags.
2017-03-16 13:40:36 +01:00
d5e1716239
gnu: ncbi-vdb: Install configuration files.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add phase
"install-configuration-files".
2017-03-16 13:39:53 +01:00
558e23074e
gnu: ncbi-vdb: Override search path for java-ngs.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Patch "package.prl"
to ensure that java-ngs is found by the configure script; remove configure
flag "--with-ngs-java-prefix".
2017-03-16 13:38:39 +01:00
701111989e
gnu: ncbi-vdb: Use modify-phases syntax.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use modify-phases
syntax.
2017-03-16 10:20:56 +01:00
5021f54787
gnu: ncbi-vdb: Update to 2.8.2.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.8.2.
2017-03-16 10:19:25 +01:00
6c4ccf3228
gnu: ngs-sdk: Update to 1.3.0.
...
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.3.0.
2017-03-16 10:18:48 +01:00
0f03c53168
gnu: Add pzstd.
...
* gnu/packages/compression.scm (pzstd): New variable.
2017-03-16 05:44:02 +01:00
f6ac3101ff
gnu: Add zstd.
...
* gnu/packages/compression.scm (zstd): New variable.
2017-03-16 05:44:02 +01:00
9186216268
gnu: python-publicsuffix2: Update to 2.20160818.
...
* gnu/packages/python.scm (python-publicsuffix2): Update to 2.20160818.
2017-03-16 05:44:02 +01:00
192b887a03
gnu: awscli: Update to 1.11.63.
...
* gnu/packages/python.scm (awscli): Update to 1.11.63.
2017-03-16 05:44:01 +01:00
d93985fe22
gnu: python-botocore: Update to 1.5.26.
...
* gnu/packages/python.scm (python-botocore): Update to 1.5.26.
2017-03-16 05:44:01 +01:00
70fc93cb28
gnu: python-ptyprocess: Update to 0.5.1.
...
* gnu/packages/python.scm (python-ptyprocess): Update to 0.5.1.
2017-03-16 05:44:01 +01:00
26a657f06a
gnu: Add prboom-plus.
...
* gnu/packages/games.scm (prboom-plus): New variable.
2017-03-15 23:14:42 -04:00
5b5cf3c765
gnu: Add tftp-hpa.
...
* gnu/packages/networking.scm (tftp-hpa): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 18:24:30 -04:00
80a725726d
gnu: guile-next: Update to 2.2.0.
...
* gnu/packages/guile.scm (guile-next): Update to 2.2.0.
2017-03-15 22:59:40 +01:00
dce8ac54b4
gnu: profanity: Make the source URL version-agnostic.
...
* gnu/packages/messaging.scm (profanity)[source]: Use (version) in the source
URL.
2017-03-15 17:20:27 -04:00
cf8d068775
gnu: units: Update to 2.14.
...
* gnu/packages/maths.scm (units): Update to 2.14.
2017-03-15 22:19:40 +01:00
3d602acb13
gnu: no-more-secrets: Update to 0.3.2.
...
* gnu/packages/games.scm (no-more-secrets): Update to 0.3.2.
2017-03-15 22:19:40 +01:00
7ea523853c
gnu: mailutils: Update to 3.2.
...
* gnu/packages/mail.scm (mailutils): Update to 3.2.
2017-03-15 22:19:40 +01:00
f38607536e
gnu: Use INSTALL-FILE where appropriate.
...
* gnu/packages/admin.scm (wpa-supplicant-minimal): Substitute the simpler
INSTALL-FILE for COPY-FILE when invoked with redundant arguments.
* gnu/packages/bioinformatics.scm (couger, aragorn, express-beta-diversity,
edirect, fasttree, rsem, samtools-0.1): Likewise.
* gnu/packages/code.scm (withershins): Likewise.
* gnu/packages/conky.scm (conky): Likewise.
* gnu/packages/debug.scm (delta, american-fuzzy-lop): Likewise.
* gnu/packages/emacs.scm (emacs-mit-scheme-doc): Likewise.
* gnu/packages/engineering.scm (librecad): Likewise.
2017-03-15 22:19:39 +01:00
618e4bfbad
gnu: cryptsetup: Update to 1.7.4.
...
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.4.
2017-03-15 22:19:39 +01:00
4e128dd582
gnu: man-pages: Update to 4.10.
...
* gnu/packages/man.scm (man-pages): Update to 4.10.
[home-page]: Use HTTPS.
2017-03-15 22:19:38 +01:00
a829c6501b
gnu: Add profanity.
...
* gnu/packages/messaging.scm (profanity): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
781d3b070c
gnu: Add libstrophe.
...
* gnu/packages/messaging.scm (libstrophe): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
13292ee570
gnu: Add libmesode.
...
* gnu/packages/messaging.scm (libmesode): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
9e61d1534a
gnu: bitcoin-core: Update to 0.14.0.
...
* gnu/packages/finance.scm (bitcoin-core): Update to 0.14.0.
2017-03-15 15:48:43 -04:00
bd102157a1
gnu: mariadb: Update to 10.1.22 [fixes CVE-2017-3302 and CVE-2017-3313].
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.22.
2017-03-15 15:08:31 +01:00
27bf00e691
gnu: python-waf: Update to 1.9.8.
...
* gnu/packages/python.scm (python-waf, python2-waf): Update to 1.9.8.
[home-page]: Use https.
2017-03-15 13:08:56 +02:00
283234a309
gnu: direnv: Update to 2.11.3.
...
* gnu/packages/shellutils.scm (direnv): Update to 2.11.3.
2017-03-15 03:45:57 +01:00
68c10f31f9
gnu: conky: Update to 1.10.6.
...
* gnu/packages/conky.scm (conky): Update to 1.10.6.
2017-03-15 03:45:56 +01:00
708e76287c
gnu: obs: Update to 18.0.1.
...
* gnu/packages/video.scm (obs): Update to 18.0.1.
2017-03-15 03:45:56 +01:00
17753e6edb
gnu: youtube-dl: Update to 2017.03.15.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.15.
2017-03-15 03:45:55 +01:00
a988cbb766
gnu: stress-make: Fix description.
...
* gnu/packages/debug.scm (stress-make)[description]: Fix typo.
Avoid ambiguous use of ‘in order’.
2017-03-15 03:45:55 +01:00
d540156c69
gnu: znc: Update to 1.6.5.
...
* gnu/packages/messaging.scm (znc): Update to 1.6.5.
2017-03-15 03:43:21 +01:00
6d57723ac8
gnu: grue-hunter: Correctly install documentation.
...
* gnu/packages/games.scm (grue-hunter)[arguments]: Install and populate
‘/share/doc/grue-hunter’ as a directory, not a plain file.
2017-03-15 01:10:31 +01:00
b2d748edff
gnu: samtools: End installation phases with truth.
...
* gnu/packages/bioinformatics.scm (samtools, samtools-0.1)[arguments]:
Return #T instead of the undefined results of COPY-FILE or INSTALL-FILE.
2017-03-15 01:10:30 +01:00
35dcfed370
gnu: w3m: Update to 0.5.3+git20170102 [security fixes].
...
See 'NEWS' and 'ChangeLog' in the source distribution for more
information about the security-related bug fixes.
* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20170102.
2017-03-14 18:26:28 -04:00
2eab5db300
Revert "gnu: gitolite: Fix shebangs in hooks."
...
This change embedded store references in the shebangs of scripts that
were meant to be copied out of the store. Those scripts would break when
the interpreters expected by the shebangs were garbage collected.
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25966#28 >
This reverts commit d0c16adb19
2017-03-14 18:26:28 -04:00
796d2f2d0b
Revert "gnu: nss: Use 'modify-phases' syntax."
...
This reverts commit 87f1c7efc1
2017-03-14 22:29:18 +01:00
031349075a
Revert "gnu: nss, nss-certs: Update to 3.29.3."
...
Hydra failed to build this version. See discussion at
https://lists.gnu.org/archive/html/guix-devel/2017-03/msg00408.html .
This reverts commit 4f3dcdd99b
2017-03-14 22:26:18 +01:00
edda7ebec1
gnu: Add ocaml-ppx-typerep-conv.
...
* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): New variable.
2017-03-14 22:09:56 +01:00
d2203187fe
gnu: Add ocaml-ppx-let.
...
* gnu/packages/ocaml.scm (ocaml-ppx-let): New variable.
2017-03-14 22:09:50 +01:00
250ac438e7
gnu: Add ocaml-ppx-enumerate.
...
* gnu/packages/ocaml.scm (ocaml-ppx-enumerate): New variable.
2017-03-14 22:09:48 +01:00
a43160ee6f
gnu: Add ocaml-ppx-assert.
...
* gnu/packages/ocaml.scm (ocaml-ppx-assert): New variable.
2017-03-14 22:09:46 +01:00
651563bd71
gnu: Add ocaml-ppx-here.
...
* gnu/packages/ocaml.scm (ocaml-ppx-here): New variable.
2017-03-14 22:09:44 +01:00
14af90cfbd
gnu: Add ocaml-ppx-variants-conv.
...
* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): New variable.
2017-03-14 22:09:41 +01:00
334436f051
gnu: Add ocaml-ppx-sexp-conv.
...
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-conv): New variable.
2017-03-14 22:09:39 +01:00
d1d90df63b
gnu: Add ocaml-variantslib.
...
* gnu/packages/ocaml.scm (ocaml-variantslib): New variable.
2017-03-14 22:09:37 +01:00
ef0051b2c5
gnu: Add ocaml-typerep.
...
* gnu/packages/ocaml.scm (ocaml-typerep): New variable.
2017-03-14 22:09:33 +01:00
d19c1b4105
gnu: Add ocaml-sexplib.
...
* gnu/packages/ocaml.scm (ocaml-sexplib): New variable.
2017-03-14 22:09:14 +01:00
9099a45792
gnu: asciidoc: Add XML and XSLT support.
...
* gnu/packages/documentation.scm (asciidoc)[arguments]: Add
set-xml-binary-paths phase.
[inputs]: Add libxml2 and libxslt.
2017-03-14 15:57:54 -04:00
5895ec8aa2
pack: Add '--symlink'.
...
* guix/scripts/pack.scm (self-contained-tarball): Add #:symlinks
parameter.
[build](symlink->directives): New procedure
(directives): New variable.
Add call to 'evaluate-populate-directive'. Pass the directories among
DIRECTIVES to 'tar'.
(%default-options): Add 'symlinks'.
(%options, show-help): Add '--symlink'.
(guix-pack): Honor it.
* gnu/build/install.scm (evaluate-populate-directive): Export.
* doc/guix.texi (Invoking guix pack): Document it.
2017-03-14 17:57:27 +01:00
6b63c43e06
pack: Add '--localstatedir' option.
...
* guix/scripts/pack.scm (self-contained-tarball): Add #:localstatedir?
parameter and honor it.
(%options, show-help): Add '--localstatedir'.
(guix-pack): Honor it.
* gnu/build/install.scm (populate-single-profile-directory): Add
#:register? parameter and honor it.
* doc/guix.texi (Binary Installation): Use '--localstatedir' in
example.
(Invoking guix pack): Document it.
2017-03-14 17:57:27 +01:00
9b05ccfedd
gnu: linux-libre@4.1: Update to 4.1.39.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.39.
2017-03-14 12:55:20 -04:00
962cbb24c5
gnu: windowmaker: Use modify-phases syntax.
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* gnu/packages/gnustep.scm (windowmaker)[arguments]: Use modify-phases.
2017-03-14 12:10:16 -04:00
8cac5bca12
gnu: windowmaker: Update to 0.95.8.
...
* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.8.
2017-03-14 12:10:12 -04:00
d779305db0
gnu: aria2: Update to 1.31.0.
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* gnu/packages/bittorrent.scm (aria2): Update to 1.31.0.
2017-03-14 15:05:27 +02:00
28958b646f
gnu: python-parsedatetime: Update to 2.3.
...
Version 2.1 was apparently time-sensitive and started failing like this:
======================================================================
FAIL: testFloat (tests.TestDelta.test)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 64, in testFloat
self.cal.parse('1.4 months ago', self.source), months=-1.4)
File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 37, in assertDelta
self.assertTrue(diff < 0.05, '%s is not less than 0.05' % diff)
AssertionError: 0.0666666666667 is not less than 0.05
----------------------------------------------------------------------
* gnu/packages/python.scm (python-parsedatetime): Update to 2.3.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
[propagated-inputs]: New field.
2017-03-14 11:18:16 +01:00
a4651f6411
gnu: Add dovecot-libsodium-plugin.
...
* gnu/packages/mail.scm (dovecot-libsodium-plugin): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-14 10:28:57 +01:00
944a5cdd0d
gnu: Add dovecot-trees.
...
* gnu/packages/mail.scm (dovecot-trees): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-14 10:28:57 +01:00
a70782d37b
gnu: wireless-regdb: Update to 2017.03.07.
...
* gnu/packages/linux.scm (wireless-regdb): Update to 2017.03.07.
2017-03-14 01:58:35 -04:00
0f11f64022
gnu: guile-cairo: Honor the Guile effective version.
...
* gnu/packages/gtk.scm (guile-cairo)[arguments]: Add #:modules.
Get the effective version of Guile and use that in installation
directory names.
2017-03-13 22:26:54 +01:00
b97438650d
gnu: guile-cairo: Use 'modify-phases'.
...
* gnu/packages/gtk.scm (guile-cairo)[arguments]: Use 'modify-phases'.
2017-03-13 22:18:13 +01:00
12773de3e7
gnu: Add guile2.2-lib.
...
* gnu/packages/guile.scm (guile2.2-lib): New variable.
2017-03-13 21:52:38 +01:00
a71c863834
gnu: Add python-flask-login.
...
* gnu/packages/python.scm (python-flask-login, python2-flask-login): New
variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-13 19:36:56 +01:00
78c5566365
gnu: Add python-flask-htmlmin.
...
* gnu/packages/python.scm (python-flask-htmlmin, python2-flask-htmlmin): New
variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-13 19:36:55 +01:00
35db2d3cb7
gnu: Add python-htmlmin.
...
* gnu/packages/python.scm (python-htmlmin, python2-htmlmin): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-13 19:36:54 +01:00
1bbbb0b4af
gnu: diffoscope: Update to 78.
...
* gnu/packages/package-management.scm (diffoscope): Update to 78.
2017-03-13 19:16:19 +01:00
8298df96ac
gnu: Add minizip.
...
* gnu/packages/compression.scm (minizip): New variable.
2017-03-13 19:16:19 +01:00
dd8ecb386c
gnu: notmuch: Update to 0.24.
...
* gnu/packages/mail.scm (notmuch, python-notmuch, python2-notmuch): Update to
0.24.
2017-03-13 18:21:23 +01:00
17fb6fb105
gnu: xf86-video-intel: Update to 2.99.917-4-7e9e92c.
...
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-4-7e9e92c.
2017-03-13 18:21:23 +01:00
ca453df7c8
gnu: xf86-video-nouveau: Update to 1.0.14.
...
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.14.
2017-03-13 18:21:22 +01:00
4f3dcdd99b
gnu: nss, nss-certs: Update to 3.29.3.
...
* gnu/packages/gnuzilla.scm (nss): Update to 3.29.3.
* gnu/packages/certs.scm (nss-certs): Update to 3.29.3.
2017-03-13 18:21:22 +01:00
87f1c7efc1
gnu: nss: Use 'modify-phases' syntax.
...
* gnu/packages/gnuzilla.scm (nss)[arguments]: Use 'modify-phases'.
2017-03-13 18:21:22 +01:00
7a4dea524b
gnu: manaplus: Update to 1.7.3.4.
...
* gnu/packages/games.scm (manaplus): Update to 1.7.3.4.
2017-03-13 18:21:10 +03:00
846344d053
gnu: git-modes: Update to 1.2.4.
...
* gnu/packages/emacs.scm (git-modes): Update to 1.2.4.
2017-03-13 18:21:10 +03:00
2617050b3b
gnu: magit: Update to 2.10.3.
...
* gnu/packages/emacs.scm (magit): Update to 2.10.3.
2017-03-13 18:21:10 +03:00
0216137237
gnu: guile-next: Update to 2.1.8.
...
* gnu/packages/guile.scm (guile-next): Update to 2.1.8.
2017-03-13 12:22:38 +01:00
3288e647e3
gnu: r-hexbin: Update to 1.27.1-1.
...
The package tarball was updated in place, resulting in a change in the hash
value. We decided to bump the version to 1.27.1-1 instead of keeping the
version at upstream's 1.27.1.
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.1-1.
2017-03-13 10:34:00 +01:00
8f7ea70913
gnu: guile-next: Increase max-silent-time.
...
* gnu/packages/guile.scm (guile-next)[properties]: Add 'max-silent-time'.
2017-03-13 10:30:33 +01:00
59bb178cce
gnu: linux-libre@4.4: Update to 4.4.53.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.53.
2017-03-13 00:56:58 -04:00
7bc57e760c
gnu: linux-libre@4.9: Update to 4.9.14.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.14.
2017-03-13 00:56:58 -04:00
49a8c92cbe
gnu: linux-libre: Update to 4.10.2.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.2.
(%linux-libre-hash): Update hash.
2017-03-13 00:56:58 -04:00
108f69c448
gnu: ecl: Update to 16.1.3.
...
* gnu/packages/lisp.scm (ecl): Update to 16.1.3.
[arguments]: Use a different method to set the binary used for tests.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-12 23:47:40 -04:00
3f06f43058
gnu: irssi: Update to 1.0.2.
...
* gnu/packages/irc.scm (irssi): Update to 1.0.2.
2017-03-12 19:58:52 +01:00
720cb10c15
services: Move configuration functions that shouldn't be factorized.
...
* gnu/services/configuration.scm (serialize-field, serialize-string)
(serialize-space-separated-string-list, space-separated-string-list?)
(serialize-file-name, file-name?, serialize-boolean): Move these functions...
* gnu/services/cups.scm: ...to this file.
* gnu/services/kerberos.scm: ...to this file.
Configuration syntaxes are very specific to services. Some services may have
the same configuration syntax, but none of them is common enough to be
abstracted in configuration.scm.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-12 19:09:32 +01:00
56aef188a2
services: dovecot: Reimplement proper configuration functions.
...
* gnu/services/mail.scm (uglify-field-name, serialize-field, serialize-string)
(space-separated-string-list?, serialize-space-separated-string-list)
(file-name?, serialize-file-name, serialize-boolean): Add them.
These functions were inadvertently changed while being factorized in
gnu/service/configuration.scm.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-12 19:08:50 +01:00
239c22663a
Add 'guix pack'.
...
* gnu/system/install.scm (self-contained-tarball): Move to...
* guix/scripts/pack.scm: ... here. New file.
* doc/guix.texi (Binary Installation): Mention 'guix pack'.
(Invoking guix pack): New node.
* build-aux/make-binary-tarball.scm: Remove.
* Makefile.am (MODULES): Add guix/scripts/pack.scm.
(EXTRA_DIST): Remove build-aux/make-binary-tarball.scm.
(guix-binary.%.tar.xz): Rewrite using 'guix pack'.
* build-aux/hydra/gnu-system.scm (tarball-jobs): Adjust accordingly.
2017-03-12 17:47:25 +01:00
998ac26a1e
gnu: tintin++: Use a mirror:// URI.
...
* gnu/packages/games.scm (tintin++)[source]: Use mirror://sourceforge.
2017-03-12 17:47:25 +01:00
301f12ec92
gnu: offlineimap: Update to 7.0.14.
...
* gnu/packages/mail.scm (offlineimap): Update to 7.0.14.
2017-03-12 15:44:37 +01:00
0a6bd107e5
gnu: Add le-certs.
...
* gnu/packages/certs.scm (le-certs): New variable.
2017-03-12 03:23:16 -04:00
eba560765a
services: dovecot: Fix unix_listeners and fifo_listeners path types.
...
* gnu/services/mail.scm (unix-listener-configuration)[path]
(fifo-listener-configuration)[path]: Change type from 'file-name' to 'string'.
* doc/guix.texi (Mail Services): Document it.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-12 01:30:23 +01:00
a5935d1946
gnu: Add r-tsne.
...
* gnu/packages/bioinformatics.scm (r-tsne): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
02eec38ee1
gnu: Add r-ranger.
...
* gnu/packages/statistics.scm (r-ranger): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
d1906e3147
gnu: Add r-tclust.
...
* gnu/packages/statistics.scm (r-tclust): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
5a200a24eb
gnu: Add r-sn.
...
* gnu/packages/statistics.scm (r-sn): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
06085b5bc5
gnu: Add r-numderiv.
...
* gnu/packages/statistics.scm (r-numderiv): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
fe68c8a990
gnu: Add r-mnormt.
...
* gnu/packages/statistics.scm (r-mnormt): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
362ea0dc29
gnu: Add r-rcppprogress.
...
* gnu/packages/statistics.scm (r-rcppprogress): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
aa890f6185
gnu: Add r-caret.
...
* gnu/packages/statistics.scm (r-caret): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
ab2ec643c3
gnu: Add r-car.
...
* gnu/packages/statistics.scm (r-car): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
a3eb8c8191
gnu: Add r-pbkrtest.
...
* gnu/packages/statistics.scm (r-pbkrtest): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
51fc7d8c31
gnu: Add r-lme4.
...
* gnu/packages/statistics.scm (r-lme4): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
c549864d90
gnu: Add r-nloptr.
...
* gnu/packages/statistics.scm (r-nloptr): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
49dc1fa5cb
gnu: Add r-quantreg.
...
* gnu/packages/statistics.scm (r-quantreg): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
545d0789fc
gnu: Add r-matrixmodels.
...
* gnu/packages/statistics.scm (r-matrixmodels): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
aa84100011
gnu: Add r-modelmetrics.
...
* gnu/packages/statistics.scm (r-modelmetrics): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
21cfad44c1
gnu: Add r-rcppeigen.
...
* gnu/packages/statistics.scm (r-rcppeigen): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
0392f82fd5
gnu: Add r-minqa.
...
* gnu/packages/statistics.scm (r-minqa): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:05 +10:00
5a717a95b3
gnu: wine: Update to 2.3.
...
* gnu/packages/wine.scm (wine): Update to 2.3.
2017-03-12 00:00:25 +01:00
4bff300b53
gnu: Add phonon-backend-gstreamer.
...
* gnu/packages/kde-frameworks.scm (phonon-backend-gstreamer): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 22:23:28 +01:00
5578c2987e
gnu: phonon: Install Qt extensions.
...
* gnu/packages/kde-frameworks.scm (phonon)[arguments]: Add
-DPHONON-INSTALL_QT_EXTENSIONS_INTO_SYSTEM_QT configure flag, and patch the
installation directory.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 22:23:28 +01:00
612af7ff66
gnu: re2: Set CXX for cross-compilation.
...
* gnu/packages/regex.scm (re2)[arguments]: Specify CXX in #:make-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 22:23:28 +01:00
e7b9dac7b1
gnu: cuirass: Update to 0.0.1 revision 5.
...
* gnu/packages/ci.scm (cuirass): Update to 0.0.1 revision 5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 22:23:28 +01:00
c4b15cb54f
gnu: imagemagick: Update to 6.9.7-10.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-10.
2017-03-11 12:35:57 -05:00
a15638034e
gnu: Add ghc-unexceptionalio.
...
* gnu/packages/haskell.scm (ghc-unexceptionalio): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 12:43:36 +01:00
55fa53491b
gnu: Add emacs-memoize.
...
* gnu/packages/emacs.scm (emacs-memoize): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 12:43:36 +01:00
47bdc5a173
linux-initrd: Add a raw-initrd and use it to define base-initrd.
...
* gnu/system/linux-initrd.scm (raw-initrd): New exported variable.
(base-initrd): Use raw-initrd to build the initrd.
* doc/guix.texi (Initial RAM Disk): Document it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 12:43:36 +01:00
c84c8f66f5
gnu: wget: Fix CVE-2017-6508.
...
* gnu/packages/patches/wget-CVE-2017-6508.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/wget.scm (wget)[source]: Use it.
2017-03-10 22:36:58 -05:00
e08ad76658
gnu: Add r-fnn.
...
* gnu/packages/statistics.scm (r-fnn): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 11:55:28 +10:00
7711f61450
gnu: Add r-pbapply.
...
* gnu/packages/statistics.scm (r-pbapply): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 11:51:50 +10:00
d4cebae286
gnu: Add r-vgam.
...
* gnu/packages/statistics.scm (r-vgam): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 11:47:02 +10:00
fbf45d6ea7
gnu: vsearch: Update to 2.4.2.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.2.
2017-03-11 11:37:15 +10:00
036cd0cb8b
gnu: Add r-ape.
...
* gnu/packages/bioinformatics.scm (r-ape): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
a409e8b52f
gnu: Add r-fpc.
...
* gnu/packages/statistics.scm (r-fpc): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
5da4f84f1f
gnu: Add r-trimcluster.
...
* gnu/packages/statistics.scm (r-trimcluster): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
c0cab38e03
gnu: Add r-robustbase.
...
* gnu/packages/statistics.scm (r-robustbase): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
cda0720805
gnu: Add r-deoptimr.
...
* gnu/packages/statistics.scm (r-deoptimr): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
c962816dc4
gnu: Add r-prabclus.
...
* gnu/packages/statistics.scm (r-prabclus): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
5638e15475
gnu: Add r-mclust.
...
* gnu/packages/statistics.scm (r-mclust): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:25 +10:00
a1f2668e6c
gnu: Add r-flexmix.
...
* gnu/packages/statistics.scm (r-flexmix): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:25 +10:00
1721fb4fe7
gnu: Add r-modeltools.
...
* gnu/packages/statistics.scm (r-modeltools): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:25 +10:00
d5eca4f9ac
gnu: Add r-diptest.
...
* gnu/packages/statistics.scm (r-diptest): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:25 +10:00
a2fa9c3d1b
gnu: Add obnam.
...
* gnu/packages/backup.scm (obnam): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-10 22:06:25 +01:00
b500dc2e83
gnu: icestorm: Replace reference in icebox_vlog.
...
* gnu/packages/fpga.scm (icestorm)[arguments]: Add phase
"fix-usr-local" to replace reference to /usr/local/share.
2017-03-10 21:15:39 +01:00
97bede8466
gnu: dub: Update to 1.2.2.
...
* gnu/packages/ldc.scm (dub): Update to 1.2.2.
2017-03-10 19:39:52 +01:00
f895dce41b
services: openssh: Fix 'PrintLastLog' default behaviour.
...
* gnu/services/ssh.scm (openssh-config-file): Add 'print-last-log?' option.
(<openssh-configuration>)[print-last-log?]: Add it.
(openssh-activation): Touch /var/log/lastlog.
* doc/guix.texi (Networking Services): Document 'print-last-log?'.
Before that, the service did not work as expected because /var/log/lastlog did
not exist.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-03-10 19:23:45 +01:00
1806a670f0
services: openssh: Remove deprecated options.
...
* gnu/services/ssh.scm (openssh-config-file): Remove them.
(<openssh-configuration>)[rsa-authentication?]: Remove it.
(<openssh-configuration>)[protocol-number]: Remove it.
* doc/guix.texi (Networking Services): Remove them.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-03-10 19:23:45 +01:00
563c5d42c9
services: openssh: Enable PAM.
...
* gnu/services/ssh.scm: (openssh-pam-services): New procedure.
(openssh-service-type): Use it to extend PAM-ROOT-SERVICE-TYPE.
(<openssh-configuration>)[challenge-response-authentication?]: New field.
(<openssh-configuration>)[use-pam?]: New field.
(openssh-config-file): Add them.
* doc/guix.texi (Networking Services): Document them.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-03-10 19:23:43 +01:00
856be82323
system: Avoid '_' as a pattern variable in 'match'.
...
* gnu/system.scm (operating-system-root-file-system): Don't use '_' as a
wildcard in 'match', to cope with literal semantics in 2.2.
2017-03-10 14:48:06 +01:00
fe2b6434f0
services: Create /var/log upon activation.
...
When launching a container created with guix system container, the
attempt to create /var/log/wtmp would fail, as /var/log did not exist.
* gnu/services.scm (activation-script): Create /var/log
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-10 14:48:06 +01:00
82ccc499f7
services: Add exim-service-type.
...
* gnu/services/mail.scm (<exim-configuration>): New record type.
(exim-computed-config-file, exim-shepherd-service, exim-activation, exim-etc,
exim-profile): New procedures.
(exim-service-type, %exim-accounts): New variables.
* doc/guix.text (Mail Services): Document it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-10 14:48:05 +01:00
79f09fa239
gnu: hmmer: Build reproducibly.
...
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file.
* gnu/packages/bioinformatics.scm (hmmer): Use it.
2017-03-10 20:31:30 +10:00
5ded35d89d
gnu: Add sambamba.
...
* gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New
variables.
2017-03-10 10:13:59 +01:00
fc1428d295
gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640].
...
* gnu/packages/messaging.scm (pidgin): Update to 2.12.0.
2017-03-10 01:44:39 -05:00
5c95465e27
gnu: neomutt: Configure with 'lmdb' and 'kyotocabinet'.
...
* gnu/packages/mail.scm (neomutt)[configure]: Add '--with-kyotocabinet'
and '--with-lmdb'.
[inputs]: Add 'lmdb' and 'kyotocabinet'.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09 20:36:44 -05:00
469609a987
gnu: neomutt: Update to 20170306.
...
* gnu/packages/mail.scm (neomutt): Update to 20170306.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09 20:36:39 -05:00
91c8724165
Revert "gnu: neomutt: Configure with 'lmdb' and 'tokyocabinet'."
...
'kyotocabinet' is more current than tokyocabinet in development
and supported in neomutt aswell.
This reverts commit ef91e2b964
2017-03-09 20:36:32 -05:00
d4f6f78ea3
gnu: hiawatha: Adjust description.
...
* gnu/packages/web.scm (hiawatha)[description]: Adjust it.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09 19:42:16 -05:00
f2a7ce5033
gnu: Add font-tamzen.
...
* gnu/packages/fonts.scm (font-tamzen): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09 19:23:07 -05:00
ff797172b0
gnu: btrfs-progs/static: Correct description.
...
* gnu/packages/linux.scm (btrfs-progs/static)[description]: Use the correct
name of the btrfs-progs package and @command{} mark-up.
2017-03-09 23:55:57 +01:00
5595d4c1fd
gnu: btrfs-progs: Update to 4.10.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.
2017-03-09 23:55:54 +01:00
ab84c13ff0
gnu: ibus-anthy: Update to 1.5.9.
...
* gnu/packages/ibus.scm (ibus-anthy): Update to 1.5.9.
2017-03-09 22:49:38 +01:00
2704f5be09
gnu: ibus: Update to 1.5.15.
...
* gnu/packages/ibus.scm (ibus): Update to 1.5.15.
2017-03-09 22:49:38 +01:00
1b34a47da0
gnu: pius: Update to 2.2.4.
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* gnu/packages/gnupg.scm (pius): Update to 2.2.4.
2017-03-09 22:49:37 +01:00
50b398298f
gnu: youtube-dl: Update to 2017.03.07.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.07.
2017-03-09 22:49:37 +01:00
d9e94c6170
gnu: graphicsmagick: Build with 16 bit quantum depth.
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Octave requires graphicsmagick to be built with 16 bit quantum depth.
* gnu/packages/imagemagick.scm (graphicsmagick)[arguments]: Add
"--with-quantum-depth=16" and "--enable-quantum-library-names"
to #:configure-flags.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09 16:46:12 -05:00
9f91340166
gnu: octave: Build with curl and graphicsmagick.
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* gnu/packages/maths.scm (octave)[inputs]: Add curl and graphicsmagick.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09 16:46:09 -05:00
1f28b3195a
gnu: xf86-input-libinput: Update to 0.25.0.
...
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.25.0.
2017-03-09 18:13:22 +01:00
b6b2ca5d19
gnu: Add python2-larch.
...
* gnu/packages/python.scm (python2-larch): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09 17:11:03 +01:00
c220f0b474
gnu: Add python2-tracing.
...
* gnu/packages/python.scm (python2-tracing): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09 17:09:17 +01:00
77e9941160
gnu: Add python2-ttystatus.
...
* gnu/packages/python.scm (python2-ttystatus): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09 16:53:23 +01:00
33e9490ca1
gnu: Add python2-cliapp.
...
* gnu/packages/python.scm (python2-cliapp): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09 16:52:53 +01:00
6741676911
gnu: python-numpy-documentation: Use full git commit hash in submodule.
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* gnu/packages/python.scm (python-numpy-documentation,
python2-numpy-documentation)[native-inputs]: Update hash of
SCIPY-SPHINX-THEME. Fix indentation of a line.
2017-03-09 16:39:09 +01:00
63d62305c3
gnu: Remove obsolete numpy comment.
...
* gnu/packages/python.scm: Remove comment.
2017-03-09 16:39:08 +01:00
ed6a21b45f
gnu: inetutils: Disable parallel tests.
...
* gnu/packages/admin.scm (inetutils)[arguments]: Add #:parallel-tests? #f.
2017-03-09 16:39:08 +01:00
ce79279d34
gnu: python-pandas: Really fix build on 32bit.
...
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Fix confusion
with same-named test.
2017-03-09 16:39:08 +01:00
0da4f3659a
gnu: Add rsnapshot.
...
* gnu/packages/backup.scm (rsnapshot): New variable.
2017-03-09 12:29:23 +01:00
7b1866d783
gnu: python-fake-factory: Add back missing patch file.
...
This reverts the removal of "python-fake-factory-fix-build-32bit.patch"
by commit ce7911ddae
2017-03-09 06:08:18 -05:00
483188b76e
gnu: inetutils: Set the $localstatedir.
...
This is a followup to commit 6f5d28f9d0
2017-03-09 05:00:29 -05:00
1fa8a51ecc
gnu: icecat: Add fixes from upstream Firefox ESR 45.8.0.
...
Includes fixes for CVE-2017-5398, CVE-2017-5400, CVE-2017-5401, CVE-2017-5402,
CVE-2017-5404, CVE-2017-5405, CVE-2017-5407, CVE-2017-5408, CVE-2017-5409, and
CVE-2017-5410.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr45 repository.
2017-03-09 03:58:29 -05:00
c9b631aef4
gnu: icecat: Update to 45.7.0-gnu1.
...
* gnu/packages/gnuzilla.scm (icecat): Update to 45.7.0-gnu1. Remove patches
included in 45.7.0.
2017-03-09 03:58:27 -05:00
f2ac937924
gnu: r: Remove obsolete configure flags.
...
* gnu/packages/statistics.scm (r)[arguments]: Remove obsolete configure flags.
2017-03-09 07:38:24 +01:00
f7db12022c
gnu: r: Update to 3.3.3.
...
* gnu/packages/statistics.scm (r): Update to 3.3.3.
2017-03-09 07:38:24 +01:00
c49840f8d4
gnu: Add lensfun.
...
* gnu/packages/photo.scm (lensfun): New variable.
2017-03-08 23:49:24 +01:00
d75e8f36a8
packages: Use PACKAGE@VERSION syntax when reporting ambiguities.
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* gnu/packages.scm (%find-package): Upon ambiguity, use the
PACKAGE@VERSION syntax instead of 'package-full-name'.
2017-03-08 23:42:53 +01:00
64f34aefe7
gnu: Add guile2.2-haunt.
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* gnu/packages/guile.scm (guile2.2-haunt): New variable.
2017-03-08 23:42:53 +01:00
517fce6327
gnu: Add guile2.2-reader.
...
* gnu/packages/guile.scm (guile2.2-reader): New variable.
2017-03-08 23:42:53 +01:00
77aa0887e1
gnu: guile-reader: Update to 0.6.2.
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* gnu/packages/guile.scm (guile-reader): Update to 0.6.2.
[arguments]: Remove.
2017-03-08 23:42:53 +01:00
1099988904
services: prosody: Use 'id' to introduce unhygienic top-level identifiers.
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* gnu/services/messaging.scm (define-all-configurations): Use 'id' to
introduce raw/literal/unhygienic top-level identifiers. Fixes
compilation with Guile 2.2.
2017-03-08 23:42:52 +01:00
5d1ee4d7bc
services: prosody: Make sure 'id' is available at expansion time.
...
* gnu/services/messaging.scm (id): Use 'define-syntax-rule' instead of
'define' to make sure 'id' is available at expansion time.
2017-03-08 23:42:52 +01:00
beb1e8067d
gnu: Remove unneeded imports.
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* gnu/packages/backup.scm: Remove unneeded (guix build utils) import.
* gnu/packages/finance.scm: Likewise.
2017-03-08 23:42:52 +01:00
6f5d28f9d0
gnu: inetutils: Enable tests.
...
* gnu/packages/admin.scm (inetutils)[arguments]: Remove '#:tests? #f'
and #:configure-flags.
[native-inputs]: Add net-tools.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-08 13:11:59 -05:00
b03ee02f0d
gnu: python-pandas: Fix build on 32-bit.
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* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pandas, python2-pandas): Use it.
2017-03-08 18:04:23 +01:00
ce7911ddae
gnu: Add python-faker.
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* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Adjust
paths. Also rename to ...
* gnu/packages/patches/python-faker-fix-build-32bit.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-faker, python2-faker): New variables.
(python-fake-factory)[properties]: Superseded by PYTHON-FAKER.
(python2-fake-factory)[properties]: Superseded by PYTHON2-FAKER.
(python-orator, python2-orator)[propagated-inputs]: Replace
PYTHON-FAKE-FACTORY with PYTHON-FAKER.
2017-03-08 18:00:43 +01:00
1eaaea41e5
gnu: python-matplotlib-documentation: Fix build.
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* gnu/packages/python.scm (python-matplotlib-documentation)[native-inputs]:
Add python-mock and graphviz.
[arguments]: Use separate build and install phases; correctly set latex paper size.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-08 17:39:00 +01:00
9c974c9366
gnu: iperf: Update to 3.1.7.
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* gnu/packages/networking.scm (iperf): Update to 3.1.7.
2017-03-08 17:37:51 +01:00
3a38cf2dfd
gnu: libinput: Update to 1.6.3.
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* gnu/packages/freedesktop.scm (libinput, libinput-minimal): Update to 1.6.3.
2017-03-08 17:18:11 +01:00
beaa026aa7
gnu: r: Fix more reproducibility problems.
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* gnu/packages/statistics.scm (r)[arguments]: Patch locations in the
build system that need special treatment for reproducibility.
2017-03-08 12:32:49 +01:00
745c687be3
gnu: r: Fix syntax for INSTALL_OPTS.
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This is a follow-up to commit 4621acfd82
2017-03-08 12:32:49 +01:00
6c5b56f9fa
gnu: bash: Use the bootstrap Guile in 'url-fetch/reset-patch-level'.
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Fixes <http://bugs.gnu.org/25775 >.
Reported by Sirgazil, Ricardo Wurmus, Andy Wingo, and others.
* guix/download.scm (in-band-download): Always use GUILE. This reverts
9f05908fb1
2017-03-07 23:58:08 +01:00
faa65e2735
gnu: kdevelop: Upgrade to 5.0.4.
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* gnu/packages/kde.scm (kdevelop, kdevplatform): Upgrade to 5.0.4.
(kdevplatform)[source]: Use kde mirror instead of github.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-07 23:21:59 +01:00
9bb766e70d
gnu: pcre2: Update to 10.23.
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* gnu/packages/pcre.scm (pcre2): Update to 10.23.
[source]: Remove patch.
[arguments]: Add phase to substitute /bin/echo reference.
* gnu/packages/patches/pcre2-CVE-2016-3191.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-07 23:21:22 +01:00
3391e2a078
gnu: khal: Update to 0.9.3.
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* gnu/packages/calendar.scm (khal): Update to 0.9.3.
[native-inputs]: Use python-pytest-2.9.2.
2017-03-07 16:37:21 -05:00
f11275c9e5
gnu: gnupg: Update to 2.1.19.
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* gnu/packages/gnupg.scm (gnupg): Update to 2.1.19.
[arguments]: Add 'patch-test-paths' phase and remove 'set-gnupg-home' phase.
Add '--enable-gnupg-builddir-envvar' to #:configure-flags.
[source]: Add 'gnupg-2.1-fix-Y2038-test-failure.patch'.
* gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-07 16:37:17 -05:00
c1029f86e3
gnu: Add emacs-yasnippet.
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* gnu/packages/emacs.scm (emacs-yasnippet): New variable.
2017-03-07 19:44:49 +01:00
605fec783f
gnu: Add basic support for "alpha-linux" systems.
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* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add
"/lib/ld-linux.so.2" as "alpha-linux" ld.so.
* gnu/packages/linux.scm (system->linux-architecture): Add "alpha" arch.
Signed-off-by: Sergei Trofimovich <slyfox@inbox.ru>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-07 18:20:33 +01:00
d6abd094fc
gnu: python-rpy2: Propagate python2-singledispatch.
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* gnu/packages/python.scm (python-rp2)[native-inputs]: Rename to...
[propagated-inputs]: ... this.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-07 18:19:51 +01:00
9296684713
gnu: java-xz: Update to 1.6.
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* gnu/packages/java.scm (java-xz): Update to 1.6.
2017-03-07 17:27:30 +01:00
af12687522
gnu: guile-lib: Update to 0.2.5
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The build was broken since the URL of version 0.2.3 was changed. The archive
was moved into an "old" subdirectory of the original location.
* gnu/packages/guile.scm (guile-lib): Update to 0.2.5.
[make-flags]: Add GUILE_AUTO_COMPILE to prevent guild errors.
[phases]: Remove 'check replacement since it is no longer needed.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-07 16:44:02 +01:00
eaa72e3a11
gnu: asymptote: Update to 2.40.
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* gnu/packages/plotutils.scm (asymptote): Update to 2.40.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-03-07 20:02:04 +08:00
c402743579
gnu: Add blind.
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* gnu/packages/suckless.scm (blind): New package.
2017-03-07 19:41:23 +08:00
45321beb7d
gnu: surf: Add 'dmenu' and 'xprop' to 'inputs'.
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'dmenu' and 'xprop' are necessary to open a new URL in surf.
* gnu/packages/suckless.scm (surf)[inputs]: Add dmenu and xprop.
[arguments]: Add 'set-dmenu-and-xprop-file-name' phase to patch the
paths to the 'dmenu' and 'xprop' binaries in surf's configuration file.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-07 00:29:14 -05:00
909de139e7
vm: Fix full-boot? option.
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* gnu/system/vm.scm (virtualized-operating-system): Add full-boot?
option. Don't add a %store-mapping when full-boot? is passed. This leads
the grub-configuration-file procedure to look for the kernel and initrd in
/ instead of /gnu/store.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-06 23:54:48 +01:00
ecc4324fef
system: grub: Add missing URL in comment.
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* gnu/system/grub.scm (grub-root-search): Add missing URL in comment.
2017-03-06 23:54:48 +01:00
ba062b3ec4
gnu: python-colorspacious: Run tests.
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* gnu/packages/python.scm (python-colorspacious,
python2-colorspacious)[native-inputs]: Add python-nose.
[arguments]: Add custom 'check phase which runs nosetests.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-06 23:51:23 +01:00
46d6219d41
gnu: rofi: Fix test failure.
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* gnu/packages/xdisorg.scm (rofi)[arguments]: Disable parallel tests.
2017-03-06 23:38:48 +01:00
5eefa50abd
gnu: Remove python-sphinx-1.2.3.
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* gnu/packages/python.scm (python-sphinx-1.2.3, python2-sphinx-1.2.3): Remove variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-06 23:28:10 +01:00
6cb7477699
gnu: python-statsmodels: Update to 0.8.0.
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* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
Update to 0.8.0.
[source]: Use 'pypi-uri'.
[arguments]: Add more files to matplotlib backend substitution.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that
fails with numpy 1.12. Remove previous contents.
2017-03-06 23:24:11 +01:00
8e08604814
gnu: python-pandas: Update to 0.19.2.
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* gnu/packages/python.scm (python-pandas, python2-pandas): Update to 0.19.2.
[source]: Use 'pypi-uri'.
2017-03-06 23:24:03 +01:00
4535a93adb
gnu: python-matplotlib: Update to 2.0.0.
...
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Update to
2.0.0.
[source]: Remove Tk backend patch, use Github instead of Sourceforge.
[outputs]: Remove "doc" output.
[inputs]: Add python-pyqt.
[propagated-inputs]: Add python-cycler.
[native-inputs]: Remove python-sphinx, python-numpydoc, texlive and texinfo.
(python2-matplotlib)[native-inputs]: Add python2-functools32 and
python2-subprocess32.
(python-matplotlib-documentation, python2-matplotlib-documentation): New
variables.
* gnu/packages/patches/matplotlib-setupext-tk.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-06 23:22:22 +01:00
550bd98b41
gnu: Add python2-subprocess32.
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* gnu/packages/python.scm (python2-subprocess32): New variable.
* gnu/packages/patches/python2-subprocess32-disable-input-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-06 23:21:34 +01:00
7ccb71e0ea
gnu: python-numpy: Update to 1.12.0.
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* gnu/packages/python.scm (python-numpy): Update to 1.12.0.
[source]: Use github instead of sourceforge.
[native-inputs]: Add python-cython.
To simplify the handling of dependency cycles (numpy documentation depends
on matplotlib, which depends on numpy), we split out the documentation into
a separate package:
(python-numpy-bootstrap, python2-numpy-bootstrap): Remove variables.
(python-numpy-documentation, python2-numpy-documentation): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-06 23:21:06 +01:00
14807141e5
Revert "gnu: gnupg: Update to 2.1.19."
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This reverts commit 07302d1ab4https://bugs.gnupg.org/gnupg/issue2988 >
2017-03-06 17:11:19 -05:00
e20784e65e
gnu: texlive: Fix CVE-2016-10243.
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* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tex.scm (texlive-texmf-src): Use it.
2017-03-06 16:47:37 -05:00
e2948ef5c1
gnu: libressl: Update to 2.5.1.
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* gnu/packages/tls.scm (libressl): Update to 2.5.1.
2017-03-06 16:31:29 -05:00
23f22ba8af
services: openssh: Parameterize the OpenSSH package used by the service.
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* gnu/services/ssh.scm (<openssh-configuration>)[openssh]: New field.
(openssh-activation, openssh-shepherd-service): Use it.
2017-03-06 13:39:29 -05:00
5f8ca95eb5
gnu: giac-xcas: Update to 1.2.3-25.
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* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.3-25.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-06 14:49:58 +01:00
5b1f31ffcf
gnu: python-setuptools-scm: Update to 1.15.0.
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* gnu/packages/python.scm (python-setuptools-scm): Update to 1.15.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-06 13:55:37 +01:00
c0446791bd
gnu: python2-backports-shutil-get-terminal-size: Enable tests.
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* gnu/packages/python.scm
(python2-backports-shutil-get-terminal-size)[arguments]: Replace 'check' phase
with custom command.
[native-inputs]: Add PYTHON2-PYTEST.
2017-03-06 13:22:51 +01:00
Ricardo Wurmus