c0fc5003f3
gnu: ghc-glob: Update to 0.9.1.
...
* gnu/packages/haskell.scm (ghc-glob): Update to 0.9.1.
2017-12-05 16:37:52 +01:00
c18f82dbfb
gnu: ghc-free: Update to 4.12.4.
...
* gnu/packages/haskell.scm (ghc-free): Update to 4.12.4.
2017-12-05 16:37:52 +01:00
93e8c799fa
gnu: ghc-foldl: Update to 1.3.5.
...
* gnu/packages/haskell.scm (ghc-foldl): Update to 1.3.5.
2017-12-05 16:37:51 +01:00
ffe8c06e89
gnu: ghc-fingertree: Run tests.
...
* gnu/packages/haskell.scm (ghc-fingertree)[arguments]: Delete to run tests.
[native-inputs]: Add ghc-hunit, ghc-quickcheck, ghc-test-framework,
ghc-test-framework-hunit, and ghc-test-framework-quickcheck2.
2017-12-05 16:37:51 +01:00
35deff7286
gnu: ghc-fingertree: Update to 0.1.3.0.
...
* gnu/packages/haskell.scm (ghc-fingertree): Update to 0.1.3.0.
2017-12-05 16:37:51 +01:00
d4fd8ee4aa
gnu: ghc-fgl-arbitrary: Update to 0.2.0.3.
...
* gnu/packages/haskell.scm (ghc-fgl-arbitrary): Update to 0.2.0.3.
2017-12-05 16:37:50 +01:00
1c42bd1387
gnu: ghc-executable-path: Update to 0.0.3.1.
...
* gnu/packages/haskell.scm (ghc-executable-path): Update to 0.0.3.1.
2017-12-05 16:37:50 +01:00
e1e803881c
gnu: ghc-exceptions: Run tests.
...
* gnu/packages/haskell.scm (ghc-exceptions)[arguments]: Delete to run tests.
[native-inputs]: Add ghc-test-framework and ghc-test-framework-quickcheck2.
2017-12-05 16:37:50 +01:00
092ab12fc3
gnu: ghc-exceptions: Update to 0.8.3.
...
* gnu/packages/haskell.scm (ghc-exceptions): Update to 0.8.3.
2017-12-05 16:37:49 +01:00
56aa945e1b
gnu: ghc-enclosed-exceptions: Update to 2.0.1.
...
* gnu/packages/haskell.scm (ghc-enclosed-exceptions): Update to 2.0.1.
2017-12-05 16:37:49 +01:00
7c0e595493
gnu: ghc-dlist: Update to 0.8.0.3.
...
* gnu/packages/haskell.scm (ghc-dlist): Update to 0.8.0.3.
2017-12-05 16:37:49 +01:00
b46ebdd867
gnu: ghc-directory: Update to 1.3.1.5.
...
* gnu/packages/haskell.scm (ghc-directory): Update to 1.3.1.5.
2017-12-05 16:37:48 +01:00
59e0812966
gnu: ghc-deepseq-generics: Update to 0.2.0.0.
...
* gnu/packages/haskell.scm (ghc-deepseq-generics): Update to 0.2.0.0.
[arguments]: Delete ‘relax-ghc-prim-dependency’ phase.
2017-12-05 16:37:48 +01:00
6d39aee521
gnu: ghc-cookie: Update to 0.4.3.
...
* gnu/packages/haskell-web.scm (ghc-cookie): Update to 0.4.3.
2017-12-05 16:37:48 +01:00
ab880e6e6c
gnu: ghc-contravariant: Update to 1.4.
...
* gnu/packages/haskell.scm (ghc-contravariant): Update to 1.4.
2017-12-05 16:37:47 +01:00
bfd2ebda71
gnu: ghc-cmdargs: Update to 0.10.18.
...
* gnu/packages/haskell.scm (ghc-cmdargs): Update to 0.10.18.
2017-12-05 16:37:47 +01:00
b84908566d
gnu: ghc-cmark: Update to 0.5.6.
...
* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.6.
[description]: Update version information about bundled libcmark, and move
it to a source comment.
2017-12-05 16:37:47 +01:00
615abb9550
gnu: ghc-clock: Update to 0.7.2.
...
* gnu/packages/haskell.scm (ghc-clock): Update to 0.7.2.
2017-12-05 16:37:46 +01:00
4d9cdf3c4e
gnu: ghc-cheapskate: Expand description.
...
* gnu/packages/haskell.scm (ghc-cheapskate)[description]: Define ‘XSS’.
2017-12-05 16:37:46 +01:00
751de3d65c
gnu: ghc-cheapskate: Alphabetise inputs.
...
* gnu/packages/haskell.scm (ghc-cheapskate)[inputs]: Order alphabetically.
2017-12-05 16:37:46 +01:00
2c72272a50
gnu: ghc-chasingbottoms: Update to 1.3.1.3.
...
* gnu/packages/haskell.scm (ghc-chasingbottoms): Update to 1.3.1.3.
[source]: Remove snippet and its modules.
2017-12-05 16:37:45 +01:00
6bfcb59d02
gnu: ghc-bytestring-handle: Alphabetise inputs.
...
* gnu/packages/haskell.scm (ghc-bytestring-handle)[inputs]: Order alphabetically.
2017-12-05 16:37:45 +01:00
39bcc93283
gnu: ghc-bytestring-handle: Update to 0.1.0.6.
...
* gnu/packages/haskell.scm (ghc-bytestring-handle): Update to 0.1.0.6.
2017-12-05 16:37:45 +01:00
934dc8d2e4
gnu: ghc-bytestring-builder: Update to 0.10.8.1.0.
...
* gnu/packages/haskell.scm (ghc-bytestring-builder): Update to 0.10.8.1.0.
2017-12-05 16:37:44 +01:00
df906169d6
gnu: ghc-bytestring: Alphabetise inputs.
...
* gnu/packages/haskell.scm (ghc-bytestring)[inputs]: Order alphabetically.
2017-12-05 16:37:44 +01:00
2545c92ae5
gnu: ghc-bytestring: Update to 0.10.8.2
...
* gnu/packages/haskell.scm (ghc-bytestring): Update to 0.10.8.2
2017-12-05 16:37:44 +01:00
3433e359e4
gnu: ghc-base-compat: Update to 0.9.3.
...
* gnu/packages/haskell.scm (ghc-base-compat): Update to 0.9.3.
2017-12-05 16:37:43 +01:00
f00b85ff8d
gnu: commencement: Do not graft early bootstrap packages.
...
By definition, these packages are not depended on at run time by any of
the packages we use. Thus it does not make sense to inherit grafts.
Furthermore, those grafts would often lead to extra overhead for users
who would end up downloading those "-boot0" packages just to build
package replacements that are in fact not going to be used.
This reverts parts of f1597427f2ce27857f71https://lists.gnu.org/archive/html/guix-devel/2017-12/msg00058.html >.
* gnu/packages/commencement.scm (file-boot0, binutils-boot0): Use plain
'inherit' instead of 'package/inherit'.
2017-12-05 11:50:00 +01:00
d20b7384b7
gnu: Add clementine.
...
* gnu/packages/music.scm (clementine): New variable.
* gnu/packages/patches/clementine-use-openssl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-12-05 08:05:06 +01:00
43925703e8
gnu: Add libmygpo-qt.
...
* gnu/packages/music.scm (libmygpo-qt): New variable.
* gnu/packages/patches/libmygpo-qt-fix-jsoncreatortest.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-12-05 08:05:06 +01:00
1fa37d1b55
gnu: bluez-alsa: Add missing file-name field.
...
* gnu/packages/audio.scm (bluez-alsa)[source]: Add file-name field.
2017-12-04 22:25:27 +02:00
dba33ca3da
gnu: Add bluez-alsa.
...
* gnu/packages/audio.scm (bluez-alsa): New variable.
2017-12-04 20:56:06 +01:00
0c45a6a4c8
gnu: Add ortp.
...
* gnu/packages/telephony.scm (ortp): New variable.
2017-12-04 20:54:37 +01:00
80e2524c9a
gnu: Add bctoolbox.
...
* gnu/packages/telephony.scm (bctoolbox): New variable.
2017-12-04 20:54:37 +01:00
a64d9d56a3
gnu: mbedtls-apache: Build shared library.
...
* gnu/packages/tls.scm (mbedtls-apache)[arguments]: Enable building of shared
library.
2017-12-04 20:54:37 +01:00
b142756d9c
gnu: spice: Update to 0.14.0.
...
This is a follow-up to commit 9a187b39b7
2017-12-04 14:05:23 -05:00
982caeab6f
gnu: bazaar: Fix CVE-2017-14176.
...
* gnu/packages/patches/bazaar-CVE-2017-14176.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (bazaar)[source]: Use it.
2017-12-04 13:13:11 -05:00
c7699ebeb4
gnu: git: Remove unreliable git-svn tests.
...
Reported in <https://bugs.gnu.org/29546 >
by Mark H Weaver <mhw@netris.org>.
* gnu/packages/version-control.scm (git)[arguments]: In 'patch-tests'
phase, delete three git-svn tests.
2017-12-04 16:35:43 +01:00
6de3d1762b
gnu: elixir: Update to 1.5.2 and disable failing tests.
...
* gnu/packages/elixir.scm (elixir)[origin]: Update to 1.5.2.
[arguments]: Patch the shebang of mix. Disable failing tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-04 10:36:48 +01:00
8cbb58918c
gnu: erlang: Update to 20.1.
...
* gnu/packages/erlang.scm (erlang): Update to 20.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-04 10:36:48 +01:00
78bae62a25
gnu: protobuf: Update to 3.5.0.
...
* gnu/packages/protobuf.scm (protobuf): Update to 3.5.0.
2017-12-04 08:13:55 +01:00
74327874a5
gnu: you-get: Update to 0.4.995.
...
* gnu/packages/video.scm (you-get): Update to 0.4.995.
2017-12-04 08:13:55 +01:00
1740cb779a
gnu: ghc-async: Update to 2.1.1.1.
...
* gnu/packages/haskell.scm (ghc-async): Update to 2.1.1.1.
2017-12-04 08:13:55 +01:00
8301d739fa
gnu: ghc-alex: Update to 3.2.3.
...
* gnu/packages/haskell.scm (ghc-alex): Update to 3.2.3.
[arguments]: Run tests.
2017-12-04 08:13:30 +01:00
7e95d0fda7
gnu: ghc-comonad: Remove duplicate input.
...
* gnu/packages/haskell.scm (ghc-comonad)[inputs]: Remove ghc-contravariant.
Order alphabetically to make this less likely to happen again.
2017-12-04 04:40:15 +01:00
f745999773
gnu: di: Update to 4.44.
...
* gnu/packages/admin.scm (di): Update to 4.44.
2017-12-04 04:40:15 +01:00
1d3c059bbf
gnu: eolie: Update to 0.9.13.
...
* gnu/packages/gnome.scm (eolie): Update to 0.9.13.
2017-12-04 04:40:14 +01:00
440c4273b8
gnu: coda: Update to 2.18.3.
...
* gnu/packages/maths.scm (coda): Update to 2.18.3.
2017-12-04 04:40:14 +01:00
d3cdb25d17
gnu: python-scikit-learn: Update to 0.19.1.
...
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.19.1.
2017-12-04 04:40:14 +01:00
8d7f1d7368
gnu: guix: Update snapshot to 3fb6464.
...
* gnu/packages/package-management.scm (guix): Update to 3fb6464
2017-12-04 00:08:13 +01:00
b901043604
gnu: you-get: Update to 0.4.990.
...
* gnu/packages/video.scm (you-get): Update to 0.4.990.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-12-03 23:49:56 +01:00
4bd70904c7
gnu: shepherd: Avoid "Bad file descriptor" warnings.
...
* gnu/packages/patches/shepherd-close-fds.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shepherd)[source]: Use it.
2017-12-03 23:18:53 +01:00
98a26dc889
gnu: samplv1: Update to 0.8.5.
...
* gnu/packages/music.scm (samplv1): Update to 0.8.5.
2017-12-03 23:10:57 +01:00
54c76c2603
gnu: drumkv1: Update to 0.8.5.
...
* gnu/packages/music.scm (drumkv1): Update to 0.8.5.
2017-12-03 23:10:57 +01:00
4a7b1add2a
gnu: synthv1: Update to 0.8.5.
...
* gnu/packages/music.scm (synthv1): Update to 0.8.5.
2017-12-03 23:10:57 +01:00
d112e5a8c2
gnu: Add kallisto.
...
* gnu/packages/bioinformatics.scm (kallisto): New variable.
2017-12-03 18:38:58 +01:00
803a9d5c37
gnu: calf: Update to 0.90.0.
...
* gnu/packages/audio.scm (calf): Update to 0.90.0.
2017-12-03 18:31:48 +01:00
a4527622ee
gnu: jack-2: Update to 1.9.11-RC1.
...
* gnu/packages/audio.scm (jack-2): Update to 1.9.11-RC1.
2017-12-03 18:31:48 +01:00
952837c824
gnu: guitarix: Update to 0.36.1.
...
* gnu/packages/audio.scm (guitarix): Update to 0.36.1.
2017-12-03 18:31:48 +01:00
75bbc3c2e2
gnu: faust-2: Remove inherited phase.
...
* gnu/packages/audio.scm (faust-2)[arguments]: Remove build phase
"fix-permissions".
2017-12-03 18:31:48 +01:00
a36047422f
gnu: faust: Update to 0.9.90.
...
* gnu/packages/audio.scm (faust): Update to 0.9.90.
[source]: Download sources via git-fetch.
[arguments]: Add phase "fix-permissions".
2017-12-03 18:31:48 +01:00
518957128f
gnu: Add gst123.
...
* gnu/packages/gstreamer.scm (gst123): New variable.
2017-12-03 18:31:47 +01:00
0a3b5bb3e1
gnu: weechat: Update to 2.0.
...
* gnu/packages/irc.scm (weechat): Update to 2.0.
2017-12-03 15:39:00 +01:00
d0d666f97b
gnu: libwebp: Update to 0.6.1.
...
* gnu/packages/image.scm (libwebp): Update to 0.6.1.
2017-12-03 15:39:00 +01:00
3d0ffa6cae
gnu: git: Update to 2.15.1.
...
* gnu/packages/version-control.scm (git): Update to 2.15.1.
2017-12-03 15:39:00 +01:00
4016de5e7c
gnu: wireshark: Update to 2.4.3.
...
* gnu/packages/networking.scm (wireshark): Update to 2.4.3.
2017-12-03 15:27:23 +01:00
993490d301
gnu: giac-xcas: Update to 1.4.9-33.
...
* gnu/packages/algebra.scm (giac-xcas): Update to 1.4.9-33.
2017-12-03 14:40:24 +01:00
8c80f8ef9b
gnu: guile-dsv: Update to 0.2.1 & correct sha256.
...
* gnu/packages/guile.scm (guile-dsv): Update to 0.2.1.
2017-12-03 14:17:46 +01:00
8c94393c6a
gnu: mescc-tools: Update to 0.3.
...
* gnu/packages/mes.scm (mescc-tools): Update to 0.3.
[supported-systems]: Remove field.
2017-12-03 08:47:28 +02:00
211e804758
gnu: u-boot: Update to 2017.11.
...
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.11.
2017-12-03 08:47:28 +02:00
72f6caadcb
gnu: elogind: Add file-name for source.
...
* gnu/packages/freedesktop.scm (elogind)[source]: Add file-name field.
2017-12-02 22:41:27 +02:00
5247e79e5f
gnu: youtube-dl: Update to 2017.12.02.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.12.02.
2017-12-02 16:22:49 +01:00
63f5656c78
gnu: mtr: Don't mention only ICMP ECHO.
...
* gnu/packages/networking.scm (mtr)[description]: Allude to the fact that
mtr can send more than mere ICMP.
2017-12-02 16:22:49 +01:00
c85f069148
gnu: man-db: Use 'groff-minimal' at run time.
...
This reduces the closure of man-db from 175 MiB to 97 MiB.
* gnu/packages/man.scm (man-db)[native-inputs]: Add GROFF.
[inputs]: Replace GROFF with GROFF-MINIMAL.
[arguments]: #:configure-flags now refers to GROFF-MINIMAL.
Add #:disallowed-references.
2017-12-02 15:06:02 +01:00
3c97322a6e
gnu: Add groff-minimal.
...
* gnu/packages/groff.scm (groff-minimal): New variable.
2017-12-02 15:06:02 +01:00
63b31b567e
gnu: xfig: Don't ignore 'xmkmf' exit code.
...
Suggested by Mike Gerwitz <mtg@gnu.org>.
* gnu/packages/xfig.scm (xfig)[arguments]: Use 'invoke' when invoking
'xmkmf'.
2017-12-02 15:06:02 +01:00
763269f9ac
gnu: keepassxc: Update to 2.2.2.
...
* password-utils.scm (keepassxc): Update to 2.2.2.
2017-12-02 13:51:14 +02:00
31e557c1d9
gnu: nss-certs: Update to 3.34.1.
...
* gnu/packages/certs.scm (nss-certs): Update to 3.34.1.
2017-12-02 02:00:07 +01:00
2e7825bc7b
gnu: guile-sly: Do not propagate Guile.
...
* gnu/packages/guile.scm (guile-sly)[propagated-inputs]: Move GUILE-2.2
to...
[inputs]: ... here.
2017-12-01 18:47:34 +01:00
27c4796ef9
gnu: tor: Update to 3.1.9 [security fixes].
...
This release contains fixes for TROVE-2017-{009,010,011,012,013}.
* gnu/packages/tor.scm (tor): Update to 3.1.9.
2017-12-01 16:45:19 +01:00
b9fb70ca65
gnu: glusterfs: Replace hardcoded FHS references.
...
* gnu/packages/patches/glusterfs-use-PATH-instead-of-hardcodes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/file-systems.scm (glusterfs)[source]: Use it.
2017-12-01 16:41:23 +01:00
b59a8fd49a
gnu: Add mtr.
...
* gnu/packages/networking.scm (mtr): New public variable.
2017-12-01 16:11:57 +01:00
3f691f7196
gnu: ghc-blaze-builder: Update to 0.4.0.2.
...
* gnu/packages/haskell.scm (ghc-blaze-builder): Update to 0.4.0.2.
2017-12-01 16:08:59 +01:00
17c3a50dfd
gnu: ghc-asn1-types: Update to 0.3.2.
...
* gnu/packages/haskell-crypto.scm (ghc-asn1-types): Update to 0.3.2.
2017-12-01 16:08:58 +01:00
c24bfc3d2c
gnu: ghc-asn1-encoding: Update to 0.9.5.
...
* gnu/packages/haskell-crypto.scm (ghc-asn1-encoding): Update to 0.9.5.
2017-12-01 16:08:58 +01:00
92cd94648c
gnu: ghc-array: Update to 0.5.2.0.
...
* gnu/packages/haskell.scm (ghc-array): Update to 0.5.2.0.
2017-12-01 16:08:58 +01:00
1a1cf03f24
gnu: ghc-aeson-qq: Update to 0.8.2.
...
* gnu/packages/haskell-web.scm (ghc-aeson-qq): Update to 0.8.2.
2017-12-01 16:08:58 +01:00
f4548394d4
gnu: java: Fix several synopses & descriptions.
...
* gnu/packages/java.scm (java-plexus-classworlds)[description]: Fix typo and
use @code.
(java-plexus-container-default-bootstrap)[synopsis]: Hyphenate for clarity,
as done in the description.
[description]: Fix typo and use @dfn.
(java-jmh)[description]: Fix typo.
(java-xerial-core)[synopsis, description]: Fix typos.
2017-12-01 16:08:57 +01:00
c7ffbfe9f9
gnu: guile: Add version 2.2.3.
...
* gnu/packages/guile.scm (guile-2.2.3): New variable.
2017-12-01 16:00:15 +01:00
8ad4f0aa31
gnu: gnome-default-applications: Add Evince for PDF and PS.
...
* gnu/packages/gnome.scm (gnome-default-applications)[propagated-inputs]:
Add EVINCE.
[arguments]: Associate Evince with application/pdf and
application/postscript.
2017-12-01 16:00:14 +01:00
e695d79dc6
gnu: ghc-edisoncore: Fix typo in synopsis.
...
* gnu/packages/haskell.scm (ghc-edisoncore)[synopsis]: Fix typo.
2017-12-01 15:03:13 +01:00
fb5569b0c8
gnu: man-pages: Update to 4.14.
...
* gnu/packages/man.scm (man-pages): Update to 4.14.
2017-12-01 15:03:12 +01:00
f1de0e37d5
gnu: openfoam: Clean up to reduce closure.
...
This saves ~1GB.
* gnu/packages/simulation.scm (openfoam)[outputs]: Add debug.
[arguments]: Clean up .o and src after build.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
6101cad4d1
gnu: Add geomyidae.
...
* gnu/packages/web.scm (geomyidae): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
491cbd3553
gnu: Add emacs-evil-matchit.
...
* gnu/packages/emacs.scm (emacs-evil-matchit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
c03ba83c17
gnu: git: Run tests sequentially.
...
Fixes <https://bugs.gnu.org/29512 >.
Reported by George myglc2 Clemmer <myglc2@gmail.com>.
* gnu/packages/version-control.scm (git)[arguments]: Add
#:parallel-tests?.
2017-12-01 11:28:48 +01:00
f8446df663
gnu: elogind: Remove "uaccess" tag usage in "seat-late" rules.
...
* gnu/packages/freedesktop.scm (elogind)[arguments]: Add
'remove-uaccess-tag' phase.
2017-12-01 11:28:48 +01:00
1776d5cd18
gnu: linux-libre: Update to 4.14.3.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.3.
(%linux-libre-hash): Update hash.
2017-12-01 01:37:08 -05:00
6850c9ced5
gnu: linux-libre@4.9: Update to 4.9.66.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.66.
2017-12-01 01:36:21 -05:00
8b8600022c
gnu: linux-libre@4.4: Update to 4.4.103.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.103.
2017-12-01 01:35:44 -05:00
34a28c13f5
gnu: qemu: Enable seccomp support.
...
* gnu/packages/virtualization.scm (qemu)[inputs]: Add libseccomp.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
e33904336f
gnu: fish-guix: Update to 0.1.2.1.
...
* gnu/packages/shells.scm (fish-guix): Update to 0.1.2.1.
(license): Switch to bsd-3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
1d0865c19a
gnu: monero-core: Fix missing dependency.
...
* gnu/packages/finance.scm (monero-core)[inputs]: Add readline.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
1d752e4345
gnu: Add xautolock.
...
* gnu/packages/xdisorg.scm (xautolock): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:56 +01:00
117d8cc40e
gnu: jellyfish: Update to 2.2.7.
...
* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.
2017-11-30 17:38:36 +01:00
f1b90a2b58
gnu: r-bigmemory: Update to 4.5.31.
...
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31.
[propagated-inputs]: Remove r-r-utils.
2017-11-30 17:28:27 +01:00
b50a4b1391
gnu: r-cowplot: Update to 0.9.1.
...
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1.
[propagated-inputs]: Add r-scales.
2017-11-30 17:28:27 +01:00
a3ae2fa537
gnu: r-rcppprogress: Update to 0.4.
...
* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4.
[propagated-inputs]: Add r-devtools.
2017-11-30 17:28:26 +01:00
0382d37734
gnu: r-rmarkdown: Update to 1.8.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8.
[propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
2017-11-30 17:28:26 +01:00
e35cac9581
gnu: r-batchjobs: Update to 1.7.
...
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7.
[propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove
r-fail and r-stringr.
2017-11-30 17:28:25 +01:00
05fd8e6b46
gnu: r-pracma: Update to 2.1.1.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
2017-11-30 17:28:24 +01:00
9b8d02011f
gnu: r-annotationhub: Update to 2.10.1.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
2017-11-30 17:28:24 +01:00
87e91a9fff
gnu: r-msnid: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
2017-11-30 17:28:23 +01:00
439492654b
gnu: r-maldiquant: Update to 1.17.
...
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
2017-11-30 17:28:23 +01:00
06e8e0fc6c
gnu: r-genomicalignments: Update to 1.14.1.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
2017-11-30 17:28:22 +01:00
1ce5d32b49
gnu: r-limma: Update to 3.34.2.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
2017-11-30 17:28:22 +01:00
8131cf4162
gnu: r-variantannotation: Update to 1.24.2.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
2017-11-30 17:28:21 +01:00
d2081a17ed
gnu: r-getopt: Update to 1.20.1.
...
* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
2017-11-30 17:28:20 +01:00
4220ab0c81
gnu: r-gseabase: Update to 1.40.1.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
2017-11-30 17:28:20 +01:00
d259932ca8
gnu: r-dexseq: Update to 1.24.1.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
2017-11-30 17:28:19 +01:00
058644c0f2
gnu: r-deseq2: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
2017-11-30 17:28:18 +01:00
654c29aceb
gnu: r-annotate: Update to 1.56.1.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
2017-11-30 17:28:18 +01:00
814fd32670
gnu: r-circlize: Update to 0.4.2.
...
* gnu/packages/cran.scm (r-circlize): Update to 0.4.2.
2017-11-30 17:28:17 +01:00
d76f987c42
gnu: r-rcpp: Update to 0.12.14.
...
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.14.
2017-11-30 17:28:17 +01:00
26007cd5ee
gnu: r-timedate: Update to 3042.101.
...
* gnu/packages/cran.scm (r-timedate): Update to 3042.101.
2017-11-30 17:28:16 +01:00
87313f64d9
gnu: r-stringi: Update to 1.1.6.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
2017-11-30 17:28:16 +01:00
3e11bddcc7
gnu: r-devtools: Update to 1.13.4.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
2017-11-30 17:28:15 +01:00
20b0f8a5ec
gnu: r-mclust: Update to 5.4.
...
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.
2017-11-30 17:28:15 +01:00
6d4aed8d98
gnu: r-rcppeigen: Update to 0.3.3.3.1.
...
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
2017-11-30 17:28:14 +01:00
a0a3184925
gnu: r-car: Update to 2.1-6.
...
* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
2017-11-30 17:28:14 +01:00
c8fb593502
gnu: r-sn: Update to 1.5-1.
...
* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
2017-11-30 17:28:13 +01:00
b796f9e6be
gnu: r-openssl: Update to 0.9.9.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
2017-11-30 17:28:13 +01:00
09c0107f75
gnu: r-hms: Update to 0.4.0.
...
* gnu/packages/statistics.scm (r-hms): Update to 0.4.0.
[propagated-inputs]: Add r-rlang and r-pkgconfig.
2017-11-30 17:28:12 +01:00
6c84c735a5
gnu: r-dendextend: Update to 1.6.0.
...
* gnu/packages/cran.scm (r-dendextend): Update to 1.6.0.
2017-11-30 17:28:12 +01:00
18a11c6d62
gnu: r-recipes: Update to 0.1.1.
...
* gnu/packages/cran.scm (r-recipes): Update to 0.1.1.
[propagated-inputs]: Add r-broom and r-matrix.
2017-11-30 17:28:11 +01:00
6c8c8c6b75
gnu: Add r-broom.
...
* gnu/packages/cran.scm (r-broom): New variable.
2017-11-30 17:28:10 +01:00
cdc129dc53
gnu: Add r-psych.
...
* gnu/packages/cran.scm (r-psych): New variable.
2017-11-30 17:28:10 +01:00
6e385b76e6
gnu: mongodb: Use scons-build-system.
...
* gnu/packages/databases.scm (mongodb): Switch to scons-build-system.
2017-11-30 18:21:23 +05:30
bc27eb3b56
gnu: klick: Use scons-build-system.
...
* gnu/packages/music.scm (klick): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
3f3f8f494e
gnu: pingus: Use scons-build-system.
...
* gnu/packages/games.scm (pingus): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
92b51d127f
gnu: godot: Use scons-build-system.
...
* gnu/packages/game-development.scm (godot): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
9364a520ce
gnu: metabat: Use scons-build-system.
...
* gnu/packages/bioinformatics.scm (metabat): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
82cc8253de
gnu: serf: Use scons-build-system.
...
* gnu/packages/web.scm (serf): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
2235abb2a2
gnu: gpick: Use scons-build-system.
...
* gnu/packages/image.scm (gpick): Switch to scons-build-system.
2017-11-30 18:19:31 +05:30
2b1a5ed854
gnu: linuxdcpp: Use scons-build-system.
...
* gnu/packages/direct-connect.scm (linuxdcpp): Switch to scons-build-system.
2017-11-30 18:19:31 +05:30
bf630276a1
gnu: scons: Update to 3.0.1.
...
* gnu/packages/python.scm (scons): Update to 3.0.1.
(scons-python2): New variable.
2017-11-30 18:18:47 +05:30
c5b2905d92
gnu: dtc: Fix build on 32 bits platforms.
...
* gnu/packages/bootloaders.scm (dtc)[patches]: Add dtc-32-bits-check.patch and
dtc-format-modifier.patch to fix build and tests on 32 bits platforms.
* gnu/packages/patches/dtc-32-bits-check.patch : New file.
* gnu/packages/patches/dtc-format-modifier.patch : New file.
* gnu/local.mk (dist_patch_DATA): Add two above patches.
2017-11-30 13:32:28 +01:00
8937abefb2
gnu: Update r-matrix to 1.2-12.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-12.
2017-11-30 12:52:25 +01:00
c71558ffed
gnu: Update r-cluster to 2.0.6.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-11-30 12:51:54 +01:00
cbe1314a7e
gnu: Update r-minimal to 3.4.3.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.3.
2017-11-30 12:50:23 +01:00
8833a647bb
gnu: guix: Move 'bootstrap' phase after 'unpack'.
...
Suggested by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00389.html >.
* gnu/packages/package-management.scm (guix)[arguments]: Move
'bootstrap' phase back after 'unpack'.
2017-11-30 11:14:34 +01:00
46ff2dbb4a
gnu: grub-efi: Disable tests on all platforms.
...
This is a follow-up to 56f0feb67863087721bb
2017-11-30 10:17:09 +02:00
3e9013562c
gnu: exim: Update to 4.89.1.
...
* gnu/packages/mail.scm (exim): Update to 4.89.1.
[source]: Remove patches for fixed CVEs (all of them).
* gnu/packages/patches/exim-CVE-2017-16943.patch: Delete file...
* gnu/packages/patches/exim-CVE-2017-16944.patch: ...as well as this file...
* gnu/packages/patches/exim-CVE-2017-1000369.patch: ...and this file.
* gnu/local.mk (dist_patch_DATA): Remove all of them.
2017-11-30 02:29:09 +01:00
53d26163c6
gnu: libgit2: Avoid dependency on cURL.
...
This reduces the closure size from 225 MiB to 80 MiB, while still
supporting HTTP(S) access.
* gnu/packages/version-control.scm (libgit2)[source](modules, snippet):
New fields.
[inputs]: Remove CURL; add HTTP-PARSER.
2017-11-29 23:40:39 +01:00
32008a75dc
gnu: spectrwm: Fix description.
...
* gnu/packages/wm.scm (spectrwm)[description]: Fix typo and use @dfn.
2017-11-29 22:03:24 +01:00
ead48d0523
gnu: ghc-happy: Update to 1.19.8.
...
* gnu/packages/haskell.scm (ghc-happy): Update to 1.19.8.
[arguments]: Delete; run all tests.
2017-11-29 22:02:42 +01:00
e6e8352382
gnu: curl: Update to 7.57.0 [fixes CVE-2017-{8816,8817,8818}].
...
* gnu/packages/curl.scm (curl): Update replacement to 7.57.0.
(curl-7.56.1): Replace with ...
(curl-7.57.0): ... new variable.
2017-11-29 14:38:51 -05:00
2c646b7d52
gnu: libtorrent-rasterbar: Update to 1.1.5.
...
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.5.
2017-11-29 14:38:47 -05:00
63087721bb
gnu: grub :Disable tests on aarch64.
...
* gnu/packages/bootloaders.scm (grub)[arguments]: Add aarch64 to the
architectures where the test suite is not run.
2017-11-29 20:34:29 +02:00
a6d06e8612
gnu: openconnect: Use only vpnc-scripts.
...
* gnu/packages/vpn.scm (openconnect)[inputs, arguments]: Substitute
‘vpnc-scripts’ for ‘vpnc’
2017-11-29 16:08:36 +01:00
101e67ac20
gnu: vpnc: Use newer vpnc-scripts.
...
* gnu/packages/vpn.scm (vpnc)[source]: Remove patch.
[inputs]: Remove net-tools and iproute2. Add vpnc-scripts.
[arguments]: Delete ‘configure’ and ‘wrap-vpnc-script’ #:phases.
Add ‘use-store-paths’ phase.
* gnu/packages/patches/vpnc-script.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-29 16:08:36 +01:00
06d91fd944
gnu: Add vpnc-scripts.
...
* gnu/packages/vpn.scm (vpnc-scripts): New variable.
2017-11-29 16:08:36 +01:00
56f0feb678
gnu: grub: Disable tests on ARM platforms.
...
* gnu/packages/bootloaders (grub): Disable tests on ARM platforms.
Half of the tests are failing on ARM.
2017-11-29 15:00:55 +01:00
1fd904fb38
gnu: Update r-mutationalpatterns to 1.4.1.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.1.
2017-11-29 14:56:28 +01:00
60c8a14b8a
gnu: ghc-tasty-rerun: Update to 1.1.7.
...
* gnu/packages/haskell-check.scm (ghc-tasty-rerun): Update to 1.1.7.
2017-11-29 13:42:06 +01:00
d5feb0920e
gnu: limnoria: Update to 2017.10.01.
...
* gnu/packages/irc.scm (limnoria): Update to 2017.10.01.
2017-11-29 13:38:31 +01:00
b3e53aae08
gnu: libxfont@1: Update to 1.5.4 [fixes CVE-2017-16611].
...
* gnu/packages/xorg.scm (libxfont): Update to 1.5.4.
2017-11-29 12:53:08 +01:00
1ec0b7407f
gnu: libxfont@2: Update replacement to 2.0.3 [fixes CVE-2017-16611].
...
* gnu/packages/xorg.scm (libxfont2/fixed): Rename to ...
(libxfont2-2.0.3): ... this. Make public.
[version]: New field.
[source]: Add URI and SHA256. Remove patches.
(libxfont2)[replacement]: Change LIBXFONT2/FIXED to LIBXFONT2-2.0.3.
* gnu/packages/patches/libxfont-CVE-2017-13720.patch,
gnu/packages/patches/libxfont-CVE-2017-13722.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-11-29 12:53:08 +01:00
4fc61dac3c
gnu: libxcursor: Replace with 1.1.15 [fixes CVE-2017-16612].
...
* gnu/packages/xorg.scm (libxcursor-1.1.15): New public variable.
(libxcursor)[replacement]: New field.
2017-11-29 12:53:08 +01:00
0e7fb0cd9b
gnu: optipng: Fix CVE-2017-1000229.
...
* gnu/packages/image.scm (optipng)[source](patches): New field.
* gnu/packages/patches/optipng-CVE-2017-1000229.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-11-29 12:53:08 +01:00
efa6a1ddb5
gnu: Add r-copynumber.
...
* gnu/packages/bioinformatics.scm (r-copynumber): New variable.
2017-11-29 12:46:17 +01:00
94989d4bae
gnu: cran: Add r-rmpi.
...
* gnu/packages/cran.scm (r-rmpi): New variable.
2017-11-29 12:15:33 +01:00
3519f2841d
gnu: libtorrent-rasterbar: Update to 1.1.4.
...
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.4.
[source]: Remove 'libtorrent-rasterbar-boost-compat.patch'.
* gnu/packages/patches/libtorrent-rasterbar-boost-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-29 01:12:18 -05:00
d2bdee8a69
gnu: synergy: Fix install test/install error.
...
* gnu/packages/synergy.scm (synergy)[arguments]: Adjust the build directory in
accordance with the package's new upstream name.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 18:26:20 -05:00
48adc61c14
gnu: exim: Fix CVE-2017-16944.
...
* gnu/packages/patches/exim-CVE-2017-16944.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (exim)[source]: Use it.
2017-11-28 18:22:49 -05:00
38faa2b546
gnu: qemu: Fix CVE-2017-{15118,15119}.
...
* gnu/packages/patches/qemu-CVE-2017-15118.patch,
gnu/packages/patches/qemu-CVE-2017-15119.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2017-11-28 18:16:22 -05:00
20d2c6e749
gnu: Add nototools.
...
* gnu/packages/fontutils.scm (nototools): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:55:13 -05:00
3715aff59b
gnu: Add python2-defcon.
...
* gnu/packages/fontutils.scm (python2-defcon): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:52:58 -05:00
76040f71f1
gnu: Add python2-booleanoperations.
...
* gnu/packages/python.scm (python2-booleanoperations): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:51:45 -05:00
a39211febd
gnu: Add python-pyclipper.
...
* gnu/packages/python.scm (python-pyclipper, python2-pyclipper): New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:49:08 -05:00
9b3c7520eb
gnu: Add python-setuptools-scm-git-archive.
...
* gnu/packages/python.scm (python-setuptools-scm-git-archive,
python2-setuptools-scm-git-archive): New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:49:07 -05:00
427a51fd8f
gnu: Add python2-ufolib.
...
* gnu/packages/fontutils.scm (python2-ufolib): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:40:43 -05:00
0ee27df06b
gnu: add font-fira-sans.
...
* gnu/packages/fonts.scm (font-fira-sans): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:26:20 -05:00
4eb4742060
gnu: Add font-lato.
...
* gnu/packages/fonts.scm (font-lato): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:22:28 -05:00
27a1077580
gnu: Add font-dosis.
...
* gnu/packages/fonts.scm (font-dosis): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:18:25 -05:00
4440e40c6a
gnu: zsh: Update to 5.4.2.
...
* gnu/packages/shells.scm (zsh): Update to 5.4.2.
[arguments]: Add a 'patch-test' build phase.
2017-11-28 13:52:36 -05:00
fbf5ca3c5e
gnu: libressl: Update to 2.6.3.
...
* gnu/packages/tls.scm (libressl): Update to 2.6.3.
2017-11-28 13:50:04 -05:00
142535c3c2
gnu: you-get: Update to 0.4.985.
...
* gnu/packages/video.scm (you-get): Update to 0.4.985.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 13:50:03 -05:00
2cdf78df2d
gnu: python-internetarchive: Enable tests.
...
* gnu/packages/web.scm (python-internetarchive): Enable tests.
2017-11-28 20:23:46 +03:00
25fa22a99b
gnu: python-internetarchive: Update to 1.7.4.
...
* gnu/packages/web.scm (python-internetarchive): Update to 1.7.4.
2017-11-28 20:23:46 +03:00
e463a94ce7
gnu: guix: Update snapshot to 0a154c1.
...
* gnu/packages/package-management.scm (guix): Update to commit 0a154c1
2017-11-28 18:17:45 +01:00
a6d02fc168
gnu: Add eless.
...
* gnu/packages/emacs.scm (eless): New variable.
2017-11-28 20:13:48 +03:00
07f3b3794c
gnu: Add roguebox-adventures.
...
* gnu/packages/games.scm (roguebox-adventures): New variable.
2017-11-28 09:54:13 -05:00
1da3d2a3a1
gnu: perl-markdown-discount: Use a shorter patch file name.
...
* gnu/packages/patches/perl-text-markdown-discount-use-system-markdown.patch:
Rename to...
* gnu/packages/patches/perl-text-markdown-discount-unbundle.patch:
... this.
* gnu/packages/markup.scm (perl-text-markdown-discount): Adjust accordingly.
2017-11-28 14:57:16 +01:00
dd1640eed6
gnu: guix: Add guile-bytestructures to the search path.
...
* gnu/packages/package-management.scm (guix)[arguments]: In
'wrap-program' phase, add guile-bytestructures to the path.
2017-11-28 13:29:47 +01:00
91c619ebdf
gnu: guix: Provide the correct version string.
...
Fixes <https://bugs.gnu.org/29429 >.
Reported by Arun Isaac <arunisaac@systemreboot.net>.
* gnu/packages/package-management.scm (guix)[arguments]: Move
'bootstrap' phase before 'configure'. Create '.tarball-version' file.
2017-11-28 13:25:04 +01:00
04c3573726
gnu: xdg-utils: Add perl-file-mimeinfo as an input.
...
* gnu/packages/freedesktop.scm (perl-file-mimeinfo)
[input]: Add perl-file-mimeinfo.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 10:41:22 +01:00
d0ce96bc17
gnu: Add perl-file-mimeinfo.
...
* gnu/packages/freedesktop.scm (perl-file-mimeinfo): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 10:40:45 +01:00
825cebdb33
gnu: Add perl-file-desktopentry.
...
* gnu/packages/freedesktop.scm (perl-file-desktopentry): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 10:35:29 +01:00
b32596ecfc
gnu: Add perl-file-basedir.
...
* gnu/packages/freedesktop.scm: (perl-file-basedir): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 10:33:59 +01:00
797d238789
gnu: node: Update to 8.9.1.
...
* gnu/packages/node.scm (node): Update to 8.9.1.
[source]: Apply 'node-test-http2-server-rst-stream.patch'.
[arguments]: Skip 'doc-only' target in 'check', which attempts to use
npm to retrieve 'js-yaml' package. Remove test/doctool/test-make-doc.js.
Do not remove now-missing test case. Remove new test case that fails in
containers due to networking.
* gnu/packages/patches/node-test-http2-server-rst-stream.patch: New file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 10:04:26 +01:00
ff6dcc1ae9
gnu: libmicrohttpd: Update to 0.9.57.
...
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.57.
[description]: Fix line breaks.
2017-11-28 09:38:27 +02:00
62028e9125
gnu: nano: Update to 2.9.1.
...
* gnu/packages/nano.scm (nano): Update to 2.9.1.
2017-11-28 09:38:24 +02:00
769e715508
gnu: emacs-org-contrib: Fix sha256 checksum due to emacs-org update.
...
* gnu/packages/emacs.scm (emacs-org-contrib)[source]: Fix sha256 checksum.
2017-11-28 03:49:47 +01:00
149b2c439e
gnu: lua-lpeg: Avoid code repetition.
...
* gnu/packages/lua.scm (make-lua-lpeg): New procedure.
(lua-lpeg, lua5.2-lpeg): Call make-lua-lpeg.
2017-11-28 03:49:47 +01:00
1aace3dc34
gnu: gnurl: Update to 7.56.1-2.
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.56.1-2.
[arguments]: Adjust the #:configure-flags.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-27 15:49:17 -05:00
aad2dbfb6c
gnu: Add vim-fugitive.
...
* gnu/packages/vim.scm (vim-fugitive): New variable.
2017-11-27 22:26:17 +02:00
b200ecdeb2
gnu: Add gama.
...
* gnu/packages/gps.scm (gama): New variable.
2017-11-27 22:18:27 +02:00
03800de180
gnu: Patch udisks to directly reference cryptsetup and parted.
...
This fixes some functionality in gnome-disks, which uses udisks. Adding
cryptsetup enables creating partitions using LUKS, and adding parted enables
editing the partition tables through the disks application.
* gnu/packages/freedesktop.scm (udisks)[inputs]: Add cryptsetup and parted.
(arguments): Rename set-mount-file-name phase, and add cryptsetup and
parted.
2017-11-27 19:41:17 +00:00
080e023d45
gnu: openntpd: Enable use of TLS-based time constraints.
...
* gnu/packages/ntp.scm (openntpd)[inputs]: Add libressl.
2017-11-27 13:29:18 -05:00
12a130b011
gnu: monero-core: Update to 0.11.1.0.
...
* gnu/packages/finance.scm (monero-core): Update to 0.11.1.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-27 12:56:36 -05:00
14e09e9039
gnu: monero: Update to 0.11.1.0.
...
* gnu/packages/finance.scm (monero): Update to 0.11.1.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-27 12:56:33 -05:00
7832785def
gnu: steghide: Fix description.
...
* gnu/packages/image.scm (steghide)[description]: Remove typos and improve
grammar.
2017-11-27 17:07:12 +01:00
778c4a2fa1
gnu: rhythmbox: Update to 3.4.2.
...
* gnu/packages/gnome.scm (rhythmbox): Update to 3.4.2.
2017-11-27 17:06:26 +01:00
47aba9ddc9
gnu: libgweather: Update to 3.26.1.
...
* gnu/packages/gnome.scm (libgweather): Update to 3.26.1.
2017-11-27 17:06:25 +01:00
ac25f5972d
gnu: glade@3: Update to 3.20.2.
...
* gnu/packages/gnome.scm (glade3): Update to 3.20.2.
2017-11-27 17:06:25 +01:00
26ff9cb370
gnu: libzip: Run all tests.
...
* gnu/packages/compression.scm (libzip)[arguments]: Delete
‘remove-failing-stest’ phase.
2017-11-27 16:16:20 +01:00
18533bcf2d
gnu: borg: Use new borgbackup.org home page.
...
* gnu/packages/backup.scm (borg)[home-page]: Update.
2017-11-27 14:12:25 +01:00
b46ea394a4
gnu: python-prompt-toolkit: Update to 1.0.15.
...
* gnu/packages/python.scm (python-prompt-toolkit): Update to 1.0.15.
2017-11-27 14:12:25 +01:00
8fab029dbc
gnu: python-pyicu: Update home page.
...
* gnu/packages/python.scm (python-pyicu)[home-page]: Update.
2017-11-27 14:12:24 +01:00
d152d9338f
gnu: python-pyicu: Update to 1.9.8.
...
* gnu/packages/python.scm (python-pyicu): Update to 1.9.8.
[arguments]: Delete.
[native-inputs]: Add python-pytest and python-six.
2017-11-27 14:12:24 +01:00
36c5cf758c
gnu: rapicorn: Update home page.
...
* gnu/packages/graphics.scm (rapicorn)[home-page]: Use extant domain.
2017-11-27 14:12:24 +01:00
5f169014ec
gnu: borg: Update to 1.1.3 [fixes CVE-2017-15914].
...
* gnu/packages/backup.scm (borg): Update to 1.1.3.
[arguments]: Skip ‘test_mount_hardlinks’ test.
2017-11-27 14:12:23 +01:00
216614a4b3
gnu: youtube-dl: Update to 2017.11.26.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.11.26.
2017-11-27 14:12:23 +01:00
e8374e6912
gnu: guile-wisp: Move .go files to 'lib/guile/2.2/site-ccache'.
...
* gnu/packages/guile.scm (guile-wisp)[arguments]: Remove (system base
compile) from #:modules, and (ice-9 rdelim) and (ice-9 popen).
In 'install-go-files' phase, invoke 'guild' to compile, and write to
lib/guile/X.Y/site-ccache.
2017-11-27 14:06:27 +01:00
89c4bfe7f8
gnu: guile-wisp: Switch to Guile 2.2.
...
* gnu/packages/guile.scm (guile-wisp)[inputs]: Use GUILE-2.2 instead of
GUILE-2.0.
2017-11-27 14:05:58 +01:00
e084090554
gnu: guile-wisp: Update to 0.9.8.
...
* gnu/packages/guile.scm (guile-wisp): Update to 0.9.8.
[inputs]: Remove PYTHON.
[native-inputs]: New field.
[arguments]: Keep 'install' phase. Add 'install-go-files' phase.
Adjust 'substitute-before-config' phase.
2017-11-27 14:05:58 +01:00
776d2fb1bf
gnu: Add java-jbzip2.
...
* gnu/packages/compression.scm (java-jbzip2): New variable.
2017-11-27 12:12:41 +01:00
d7f24778de
gnu: Add java-picard-1.113.
...
* gnu/packages/bioinformatics.scm (java-picard-1.113): New variable.
2017-11-27 12:12:41 +01:00
fa6c4213c6
gnu: Add ant-junit.
...
* gnu/packages/java.scm (ant-junit): New variable.
2017-11-27 12:12:41 +01:00
9ce7ac992e
gnu: Add ant-apache-bcel.
...
* gnu/packages/java.scm (ant-apache-bcel): New variable.
2017-11-27 12:12:41 +01:00
5e3abfc83f
gnu: Add java-commons-bcel.
...
* gnu/packages/java.scm (java-commons-bcel): New variable.
2017-11-27 12:12:41 +01:00
c5ff11dcc1
gnu: Add java-cofoja.
...
* gnu/packages/java.scm (java-cofoja): New variable.
2017-11-27 12:12:40 +01:00
d7fed31ad2
gnu: Add java-picard.
...
* gnu/packages/bioinformatics.scm (java-picard): New variable.
2017-11-27 12:12:40 +01:00
bd94b6f850
gnu: java-htsjdk: Update to 2.3.0.
...
* gnu/packages/bioinformatics.scm (java-htsjdk): Update to 2.3.0.
[arguments]: Build with JDK 8.
[inputs]: Add java-ngs, java-snappy, java-commons-compress,
java-commons-logging-minimal, java-commons-jexl-2, and java-xz.
[native-inputs]: Add java-testng.
2017-11-27 12:12:40 +01:00
9e325e8c05
gnu: Add java-commons-jexl-2.
...
* gnu/packages/java.scm (java-commons-jexl-2): New variable.
2017-11-27 12:12:40 +01:00
6688c41e16
gnu: Add javacc-4.
...
* gnu/packages/java.scm (javacc-4): New variable.
2017-11-27 12:12:40 +01:00
fc8d100b24
gnu: Add javacc.
...
* gnu/packages/java.scm (javacc): New variable.
2017-11-27 12:12:40 +01:00
933ad809f1
gnu: Add java-snappy-1.
...
* gnu/packages/compression.scm (java-snappy-1): New variable.
2017-11-27 12:12:39 +01:00
9cc51d16cb
gnu: librecad: Ensure that icons are found at runtime.
...
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase
"wrap-executable".
2017-11-27 12:11:58 +01:00
35e78aaa25
gnu: r-rhdf5: Fix build phase.
...
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Fix "unpack-smallhdf5"
phase.
2017-11-27 12:11:52 +01:00
9071581bf5
gnu: shotwell: Update to 0.27.1.
...
* gnu/packages/gnome.scm (shotwell): Update to 0.27.1.
2017-11-26 19:34:43 -05:00
f953aa56cc
gnu: fish-guix: Use new URL.
...
* gnu/packages/shells.scm (fish-guix)[source]: Use new URL.
(home-page): Use new URL.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-26 18:21:19 -05:00
66e47916d4
gnu: python-pycanberra: Switch to new download URL.
...
* gnu/packages/libcanberra.scm (python-pycanberra)[source]: Use new URL.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-26 18:21:19 -05:00
6438a4682d
gnu: crawl: Update to 0.20.1.
...
* gnu/packages/games.scm (crawl): Update to 0.20.1.
(crawl-tiles): Update to 0.20.1.
[native-inputs]: Add pngcrush.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-26 17:52:24 -05:00
6dbad376a2
gnu: openntpd: Update to 6.2p3.
...
* gnu/packages/ntp.scm (openntpd): Update to 6.2p3.
2017-11-26 22:33:18 +02:00
5b327a2d61
gnu: exim: Fix CVE-2017-16943.
...
* gnu/packages/patches/exim-CVE-2017-16943.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (exim)[source]: Use it.
2017-11-26 15:31:46 -05:00
1ee13e01c8
gnu: image: Rename pngcrunch to pngcrush and update it.
...
* gnu/packages/image.scm (pngcrush): Renamed from pngcrunch.
[version]: update to 1.8.13.
[arguments]: Use the nolib Makefile.
[origin]: Use the no-lib tar.
[home-page]: update to the new website.
(pngcrunch): New deprecation variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-26 17:36:26 +01:00
3ba501083d
gnu: prosody: Add lua5.1-bitop to inputs.
...
It is required for mod_websocket on Lua 5.1 since Prosody 0.10.
* gnu/packages/messaging.scm (prosody)[inputs]: Add lua5.1-bitop.
2017-11-26 15:30:56 +01:00
cb31a52407
gnu: Add lua5.1-bitop.
...
* gnu/packages/lua.scm (make-lua-bitop): New procedure.
(lua5.2-bitop): Call make-lua-bitop.
(lua5.1-bitop): New variable.
2017-11-26 15:30:56 +01:00
93bfc9693a
gnu: prosody: Update to 0.10.0.
...
* gnu/packages/messaging.scm (prosody): Update to 0.10.0.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-11-26 15:30:56 +01:00
64047c850f
gnu: qtox: Update to 1.13.0.
...
* gnu/packages/messaging.scm (qtox): Update to 1.13.0.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-11-26 20:25:17 +08:00
a0bd6fff42
gnu: tidy-html: Update to 5.6.0.
...
* gnu/packages/web.scm (tidy-html): Update to 5.6.0.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-11-26 20:17:55 +08:00
51b0f09e05
gnu: mongodb: Remove some bundled sources.
...
* gnu/packages/databases.scm (mongodb)[source]: Add snippet to remove
some of the bundled sources.
[input]: Remove unused boost input.
2017-11-26 14:16:08 +02:00
319b52c382
gnu: mongodb: Use system wiredtiger when available.
...
* gnu/packages/databases.scm (mongodb)[inputs]: Add wiredtiger on
64-bit systems.
[arguments]: When using wiredtiger, use system wiredtiger.
2017-11-26 14:16:08 +02:00
29cfbfca43
gnu: mongodb: Build without wiredtiger on 32-bit systems.
...
* gnu/packages/databases.scm (mongodb)[arguments]: Add a configure-flag
to build without wiredtiger support on 32-bit systems.
2017-11-26 14:16:04 +02:00
f1c49e75f4
gnu: mongodb: Update to 3.4.10.
...
* gnu/packages/databases.scm (mongodb): Update to 3.4.10.
2017-11-25 20:28:11 -05:00
2af6be91d5
gnu: diffoscope: Fix error messages related to comparison tools.
...
* gnu/packages/package-management.scm (diffoscope)[arguments]: Replace readelf
substitution and add stat and getfacl substitutions.
[inputs]: Add acl.
Errors fixed include the following:
"FileNotFoundError: [Errno 2] No such file or directory: 'readelf'"
"diffoscope.comparators.directory: Unable to find 'getfacl', some directory
metadata differences might not be noticed."
"diffoscope.comparators.directory: Unable to find 'stat'"
2017-11-25 16:13:37 -05:00
5ea35b42e4
gnu: qtsensors: Disable parallel tests.
...
* gnu/packages/qt.scm (qtsensors)[arguments]: Disable parallel tests.
2017-11-25 22:16:34 +02:00
68cb962a8d
gnu: guile-emacs: Resurrect, fixes #29186 .
...
* gnu/packages/patches/guile-emacs-fix-configure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emacs.scm (guile-emacs): Use it. Add workaround for src/deps
dir creation. Fixes #29186 .
2017-11-25 20:05:26 +01:00
7989ba2af2
gnu: enlightenment: Update to 0.22.1.
...
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.1.
2017-11-25 20:08:34 +02:00
33b02e07fa
gnu: efl: Update to 1.20.6.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.20.6.
2017-11-25 20:08:31 +02:00
1e0ea1d8df
gnu: utox: Make CHECK a native-input.
...
This is a followup to commit 907ab9e8cb
2017-11-25 10:48:06 -05:00
a93ac4cbdf
gnu: linux-libre: Update to 4.14.2.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.2.
(%linux-libre-hash): Update hash.
2017-11-25 02:46:04 -05:00
b2785c54f7
gnu: linux-libre@4.9: Update to 4.9.65.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.65.
2017-11-25 02:45:12 -05:00
749164cb71
gnu: linux-libre@4.4: Update to 4.4.102.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.102.
2017-11-25 02:44:17 -05:00
e9291eaa42
gnu: Add guile-dsv.
...
* gnu/packages/guile.scm (guile-dsv): New variable.
2017-11-25 00:26:20 +01:00
ea3b9f7b73
gnu: mail: Remove python-django-mailman3.
...
This package fails to build, as django-mailman3 currently only works with
Python 2.
* gnu/packages/mail.scm (python-django-mailman3): Removed variable.
(python2-django-mailman3): Inline the use of python-django-mailman3, and
remove the use of package-with-python2.
2017-11-24 22:16:39 +00:00
17dc2a0997
gnu: django: Fix building python-django-allauth.
...
* gnu/packages/django.scm (python-django-allauth)[arguments]: Modify the
standard phases to skip a test, and run the tests using django-admin with
the settings configured.
2017-11-24 22:16:33 +00:00
7a45268935
gnu: Add emacs-highlight-stages.
...
* gnu/packages/emacs.scm (emacs-highlight-stages): New variable.
* gnu/packages/patches/emacs-highlight-stages-add-gexp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add this.
2017-11-25 00:18:45 +03:00
8cc1fce1ba
gnu: java-fasterxml-jackson-dataformat-xml: Update to 2.9.2.
...
* gnu/packages/java.scm (java-fasterxml-jackson-dataformat-xml): Update to
2.9.2.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24 21:12:23 +01:00
abe5347dd6
gnu: java-fasterxml-jackson-dataformat-yaml: Update to 2.9.2.
...
* gnu/packages/java.scm (java-fasterxml-jackson-dataformat-yaml): Update to
2.9.2.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24 21:12:20 +01:00
7cee3cb2c4
gnu: java-fasterxml-jackson-modules-base-jaxb: Update to 2.9.2.
...
* gnu/packages/java.scm (java-fasterxml-jackson-modules-base-jaxb): Update to
2.9.2.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24 21:12:17 +01:00
37cf0712da
gnu: java-fasterxml-jackson-databind: Update to 2.9.2.
...
* gnu/packages/java.scm (java-fasterxml-jackson-databind): Update to 2.9.2.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24 21:12:14 +01:00
bd614de7b8
gnu: java-fasterxml-jackson-core: Update to 2.9.2.
...
* gnu/packages/java.scm (java-fasterxml-jackson-core): Update to 2.9.2.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24 21:12:09 +01:00
b2383e55dc
gnu: java-fasterxml-jackson-annotations: Update to 2.9.2.
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* gnu/packages/java.scm (java-fasterxml-jackson-annotations): Update to
2.9.2.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24 21:12:00 +01:00
202e235ebe
gnu: php: Update to 7.1.12.
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* gnu/packages/php.scm (php): Update to 7.1.12.
2017-11-24 20:59:41 +01:00
dd0134fcb7
gnu: gcl: Update snapshot.
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* gnu/packages/lisp.scm (gcl): Update to 2.6.12-1.5956140.
[arguments]: Remove CFLAGS from and add GCL_CC and CC to make-flags; adjust
pre-conf phase.
This update includes small upstream bug fixes and optimizations.
2017-11-24 14:50:04 -05:00
01e9bc463f
gnu: python-pytz, python-pytzdata: Update to 2017.3.x.
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* gnu/packages/time.scm (python-pytz): Update to 2017.3.
(python-pytzdata): Update to 2017.3.1.
2017-11-24 19:05:01 +01:00
cc558bde52
gnu: knot: Update to 2.6.3.
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* gnu/packages/dns.scm (knot): Update to 2.6.3.
2017-11-24 19:05:01 +01:00
77e3ce3e90
gnu: emacs-org-contrib: Fix typo in description.
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* gnu/packages/emacs.scm (emacs-org-contrib)[description]: Fix typo.
2017-11-24 19:05:01 +01:00
70c68ed555
gnu: system->defconfig: Fix typo.
...
* gnu/packages/linux.scm (system->defconfig): Fix typo.
2017-11-24 19:05:00 +01:00
f7f8930b37
gnu: coq-interval: Fix source URL for 3.3.0.
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This is a followup to 6efc999678https://bugs.gnu.org/29284 >.
Reported by Efraim Flashner <efraim@flashner.co.il>.
* gnu/packages/ocaml.scm (coq-interval): Adjust URL.
2017-11-24 18:22:42 +01:00
9c3c2caa6c
gnu: parallel: Update to 20171122.
...
* gnu/packages/parallel.scm (parallel): Update to 20171122.
2017-11-24 09:31:49 -05:00
7997d37bac
gnu: qt: Update to 5.9.3.
...
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets,
qtsensors, qtmultimedia, qtwayland, qtserialport, qtserialbus,
qtwebchannel, qtlocation, qttools, qtscript, qtquickcontrols,
qtquickcontrols2, qtgraphicaleffects, qtgamepad, qtscxml,
qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth,
qtremoteobjects, qtspeech): Update to 5.9.3.
2017-11-24 16:18:35 +02:00
06378ceeb1
gnu: qt@5: Update to 5.9.3.
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* gnu/packages/qt.scm (qt@5): Update to 5.9.3.
2017-11-24 16:18:35 +02:00
907ab9e8cb
gnu: utox: Update to 0.16.1.
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* gnu/packages/messaging.scm (utox): Update to 0.16.1.
[inputs]: Add check and gtk+.
[native-inputs]: Add pkg-config.
[arguments]: Remove 'fix-freetype-include' and 'patch-cmake-find-utox' phases.
Add 'patch-absolute-filename-libgtk-3' and 'wrap-program' phases.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-23 20:26:24 -05:00
d7c64ad513
gnu: Add MASSCAN.
...
* gnu/packages/admin.scm (masscan): New variable.
2017-11-23 20:26:18 -05:00
17c3f77641
gnu: supertuxkart: Update to 0.9.3.
...
* gnu/packages/games.scm (supertuxkart): Update to 0.9.3.
[arguments] <#:configure-flags>: Pass -DBUILD_RECORDER=0.
* gnu/packages/patches/supertuxkart-angelscript-ftbfs.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-23 23:19:02 +01:00
5864f1c1ee
gnu: higan: Update to 106.
...
* gnu/packages/games.scm (higan): Update to 106.
* gnu/packages/patches/higan-remove-march-native-flag.patch: Adjust.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-23 22:59:49 +01:00
327620dc72
gnu: pcmanfm: Fix CVE-2017-8934.
...
* gnu/packages/patches/pcmanfm-CVE-2017-8934.patch: New file. This patch was
imported from Arch Linux.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lxde.scm (pcmanfm)[source]: Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-23 22:55:58 +01:00
0dcad042a5
gnu: pcmanfm: Add missing inputs. Remove comment.
...
* gnu/packages/lxde.scm (pcmanfm)[inputs]: Add GVFS.
[propagated-inputs]: Add LXMENU-DATA.
Remove comment suggesting to use --sysconfdir. Inspection of the configure
script shows that <output>/etc is used for configuration by default anyway,
so such a flag is not needed.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-23 22:54:03 +01:00
7044b92dbd
linux-libre: Adapt some arm options to match intel conf.
...
* gnu/packages/aux-files/linux-libre/4.14-arm.conf: GuixSD base-initrd expects
ext4 and fat filesystem to be built-in. Adapt configuration
accordingly. Also set devtmpfs_mount to yes.
2017-11-23 20:06:58 +01:00
d868cf4f98
gnu: fish: Update to 2.7.0.
...
* gnu/packages/shell.scm (fish): Update to 2.7.0.
[source]: Add alternative source.
2017-11-23 17:21:43 +01:00
e57e3dc57f
gnu: knot: Update to 2.6.2.
...
* gnu/packages/dns.scm (knot): Update to 2.6.2.
2017-11-23 15:52:51 +01:00
e6debcaf02
gnu: subread: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (subread): Update to 1.6.0.
2017-11-23 13:16:12 +01:00
5aa6e0d04a
gnu: emacs-org: Update to 9.1.3.
...
* gnu/packages/emacs.scm (emacs-org): Update to 20171116 a.k.a. Org 9.1.3.
2017-11-22 23:31:01 +01:00
d655f39c44
gnu: gnumeric: Update to 1.12.36.
...
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.36.
2017-11-22 22:56:58 +01:00
26ac92d49b
gnu: goffice: Update to 0.10.36.
...
* gnu/packages/gnome.scm (goffice): Update to 0.10.36.
2017-11-22 22:56:30 +01:00
77e62ee0aa
gnu: libzip: Update to 1.3.2.
...
* gnu/packages/compression.scm (libzip): Update to 1.3.2.
2017-11-22 19:01:47 +01:00
8d6c7456ab
gnu: libzip: Use new libzip.org home page.
...
* gnu/packages/compression.scm (libzip)[home-page]: Update.
2017-11-22 19:01:47 +01:00
f137f84923
gnu: vlc: Update to 2.2.8 [fixes CVE-2017-9300, CVE-2017-10699].
...
* gnu/packages/video.scm (vlc): Update to 2.2.8.
2017-11-22 18:45:31 +01:00
09f7c41d6c
gnu: emacs-magit-popup: Update for the new source.
...
'magit-popup' is not a part of 'magit' anymore.
* gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.0.
[source]: Update origin URL and file-name.
[home-page]: Update to the new home.
[native-inputs]: Add 'texinfo' to build the info manual.
[arguments]: Add 'make-info' phase.
2017-11-22 19:40:45 +03:00
f61aaaf36c
gnu: emacs-hl-todo: Update to 1.8.0.
...
* gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.8.0.
2017-11-22 19:40:45 +03:00
c297e965d5
gnu: procmail: Fix CVE-2017-16844.
...
* gnu/packages/patches/procmail-CVE-2017-16844.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (procmail)[source]: Use it.
2017-11-21 21:54:39 -05:00
3ebbf6d218
gnu: linux-libre: Update to 4.14.1.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.1.
(%linux-libre-hash): Update hash.
2017-11-21 21:22:30 -05:00
86f914e3a4
gnu: linux-libre@4.9: Update to 4.9.64.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.64.
2017-11-21 21:21:09 -05:00
1dc37cf113
gnu: linux-libre@4.4: Update to 4.4.100.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.100.
2017-11-21 21:20:33 -05:00
ab2ccf4cf5
gnu: lmms: Fix build.
...
* gnu/packages/music.scm (lmms)[arguments]: Add phases "remove-Werror" and
"make-manpages-writable".
2017-11-21 20:17:26 -05:00
aa33cc29ca
gnu: idr: Update to 2.0.3.
...
* gnu/packages/bioinformatics.scm (idr): Update to 2.0.3.
[source]: Add snippet to remove generated code.
2017-11-21 23:17:43 +01:00
40590caf3b
gnu: idr: Correct license.
...
* gnu/packages/bioinformatics.scm (idr)[license]: Change to GPLv2+.
2017-11-21 23:17:43 +01:00
5c1f38bf8b
gnu: guix: Update snapshot.
...
* gnu/packages/package-management.scm (guix): Update to 953c2de
2017-11-21 22:55:34 +01:00
953c2de706
tests: Disable test for freed disk space that fails on Btrfs.
...
This is a follow-up to commit 40e89f5be6
2017-11-21 22:46:55 +01:00
d1451fa0d0
gnu: taglib: Update to 1.11.1 and fix home page.
...
* gnu/packages/mp3.scm (taglib)[version]: Update to 1.11.1.
[arguments]: Configure with -DBUILD_SHARED_LIBS=ON.
[home-page]: Change to http://taglib.org .
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-21 22:18:44 +01:00
d280a0faea
gnu: retroarch: Update to 1.6.9.
...
* gnu/packages/games.scm (retroarch): Update to 1.6.9.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-21 22:08:02 +01:00
a28835a007
gnu: gnupg: Update to 2.2.3.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.3.
2017-11-21 22:08:02 +01:00
0c417d955e
gnu: orc: Update to 0.4.28.
...
* gnu/packages/gstreamer.scm (orc): Update to 0.4.28.
2017-11-21 22:08:02 +01:00
b63466f2bc
gnu: samba: Update to 4.7.3 [fixes CVE-2017-14746 and CVE-2017-15275].
...
* gnu/packages/samba.scm (samba): Update to 4.7.3.
2017-11-21 22:08:02 +01:00
3151345c57
gnu: signify: Update to 23.
...
* gnu/packages/crypto.scm (signify): Update to 23.
2017-11-21 22:08:01 +01:00
40e89f5be6
gnu: guix: Disable test that fails on Btrfs.
...
Works around <https://bugs.gnu.org/29363 >.
Reported by Rutger Helling <rhelling@mykolab.com>.
* gnu/packages/package-management.scm (guix)[arguments]: Rename
'disable-container-tests' phase to 'disable-failing-tests' and add
substitution to disable test for freed disk space.
2017-11-21 22:07:14 +01:00
9a87aa814a
gnu: retroarch: Update to 1.6.8.
...
* gnu/packages/games.scm (retroarch): Update to 1.6.8.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-21 12:53:09 -05:00
7bd4103eb7
gnu: cdogs-sdl: Update to 0.6.6.
...
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.6.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-21 12:53:09 -05:00
cb9b1a0496
gnu: procenv: Update to 0.50.
...
* gnu/packages/linux.scm (procenv): Update to 0.50.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-21 12:53:09 -05:00
760e504dcb
gnu: you-get: Update to 0.4.964.
...
* gnu/packages/video.scm (you-get): Update to 0.4.964.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-21 12:53:08 -05:00
a0fe7c0645
gnu: Patch path to locale in gnome-desktop.
...
* gnu/packages/gnome.scm (gnome-desktop)[arguments]: Add 'patch-path phase to
get libgnome-desktop to use the full path to the locale binary.
2017-11-21 08:41:26 +00:00
0056f4cc57
gnu: knot: Update licence information.
...
* gnu/packages/dns.scm (knot)[license]: Add PUBLIC-DOMAIN. Expand comments.
2017-11-21 02:53:02 +01:00
023ef01354
gnu: knot: Support dnstap query logging.
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* gnu/packages/dns.scm (knot)[source]: No longer delete dnstap. It appears
that dnstap is intended to be bundled and modified.
[inputs]: Add fstrm and protobuf-c.
[arguments]: Add ‘--with-module-dnstap=yes’ to #:configure-flags.
2017-11-21 02:53:01 +01:00
7e685deeb7
gnu: Use ‘license:’ prefix in (gnu packages protobuf).
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* gnu/packages/protobuf.scm (fstrm, protobuf, protobuf-2, protobuf-c)
(python-protobuf, python2-protobuf): Use ‘license:’ prefix.
2017-11-21 02:53:01 +01:00
7d9935b47e
gnu: Add fstrm.
...
* gnu/packages/protobuf.scm (fstrim): New public variable.
2017-11-21 02:53:01 +01:00
ffe7eee59c
gnu: protobuf: Add ‘static’ output.
...
* gnu/packages/protobuf.scm (protobuf)[outputs]: New field.
[arguments]: Add new ‘move-static-libraries’ phase.
2017-11-21 02:53:01 +01:00
ac1f1aa270
gnu: perl-devel-stacktrace: Update to 2.03.
...
* gnu/packages/perl.scm (perl-devel-stacktrace): Update to 2.03.
2017-11-21 02:53:00 +01:00
733f94b339
gnu: btrfs-progs: Update to 4.14.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.14.
2017-11-21 02:53:00 +01:00
e26e55c86c
gnu: nss: Mark up description.
...
* gnu/packages/gnuzilla.scm (nss)[description]: Use @dfn.
2017-11-21 02:53:00 +01:00
74a83085da
gnu: eid-mw: Update to 4.3.4.
...
* gnu/packages/security-token.scm (eid-mw): Update to 4.3.4.
Fix up indentation.
2017-11-21 02:53:00 +01:00
ebde40a14a
gnu: musl: Update to 1.1.18.
...
* gnu/packages/musl.scm (musl): Update to 1.1.18.
2017-11-20 18:59:54 -05:00
41916bea1b
gnu: Add python-pyodbc.
...
* gnu/packages/databases.scm (python-pyodbc, python2-pyodbc): New variables.
2017-11-20 20:47:59 +01:00
4b1ba80cef
gnu: wget2: Switch to official URL.
...
* gnu/packages/wget.scm (wget2): Switch to official URL.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-20 18:43:10 +01:00
aa6ae8d324
gnu: scribus: Fix No module named _sysconfigdata_nd.
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* gnu/packages/scribus.scm (scribus): Wrap PATH with expected Python around
executable.
Fixes <https://bugs.gnu.org/25035 >.
2017-11-20 18:14:47 +01:00
92be9ee7e1
gnu: linux-libre@4.9: Update to 4.9.63.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.63.
2017-11-20 04:39:04 -05:00
4bee9040fe
gnu: linux-libre@4.4: Update to 4.4.99.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.99.
2017-11-20 04:38:20 -05:00
036f1eedcc
gnu: Add python-clf.
...
* gnu/packages/web.scm (python-clf): New variable.
2017-11-20 09:30:27 +03:00
08cc0ef096
gnu: kodi: Update snapshot.
...
* gnu/packages/kodi.scm (kodi): Update to 18.0_alpha-67fd70f.
2017-11-20 00:17:39 +01:00
aace9be80b
gnu: gcc@6: Respect SOURCE_DATE_EPOCH in __DATE__ and __TIME__ macros.
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* gnu/packages/patches/gcc-6-source-date-epoch-1.patch,
gnu/packages/patches/gcc-6-source-date-epoch-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/gcc.scm (gcc-6)[source]: Use them.
2017-11-20 00:17:39 +01:00
485e006c9e
gnu: guix: Update snapshot.
...
* gnu/packages/package-management.scm (guix): Update to 0b4c385
2017-11-20 00:12:25 +01:00
0b4c385f8f
gnu: gajim: Add python2-axolotl to inputs.
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* gnu/packages/messaging.scm (gajim)[inputs]: Add python2-axolotl.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-19 23:16:09 +01:00
0ce5cb02fa
gnu: qtox: Add filteraudio to inputs.
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* gnu/packages/messaging.scm (qtox)[inputs]: Add filteraudio.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-19 23:16:01 +01:00
27015d6fbd
gnu: c-toxcore: Update to 0.1.10.
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* gnu/packages/messaging.scm (c-toxcore): Update to 0.1.10.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-19 23:15:55 +01:00
118a8eccb0
gnu: audacity: Fix building on non-Intel systems.
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* gnu/packages/audio.scm (audacity)[arguments]: On non-Intel systems add
a configure-flag to disable SSE optimizations.
2017-11-19 22:07:26 +02:00
a93447b89a
gnu: nss, nss-certs: Update to 3.34.
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* gnu/packages/certs.scm (nss-certs): Update to 3.34.
* gnu/packages/gnuzilla.scm (nss): Update to 3.34.
2017-11-19 13:19:14 +01:00
0632c6a84d
gnu: bitcoin: Update to 0.15.1.
...
* gnu/packages/finance.scm (bitcoin-core): Update to 0.15.1.
2017-11-19 13:05:15 +01:00
53bbafd2db
gnu: strace: Update to 4.20.
...
* gnu/packages/linux.scm (strace): Update to 4.20.
2017-11-19 13:02:27 +01:00
baba4d673b
gnu: samba: Update to 4.7.2.
...
* gnu/packages/samba.scm (samba): Update to 4.7.2.
2017-11-19 12:59:35 +01:00
a0e52af9cf
gnu: tevent: Update to 0.9.34.
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* gnu/packages/samba.scm (tevent): Update to 0.9.34.
2017-11-19 12:57:34 +01:00
c146314566
Update email address for ng0.
2017-11-19 12:13:43 +02:00
f4dd303282
gnu: Patch ikiwiki to set PERL5LIB in the CGI wrapper.
...
This helps with CGI support.
* gnu/packages/web.scm (ikiwik)[arguments]: Add 'include-PERL5LIB-in-wrapper
phase.
2017-11-19 09:17:55 +00:00
84bd924382
gnu: nano: Update to 2.9.0.
...
* gnu/packages/nano.scm (nano): Update to 2.9.0.
2017-11-18 21:57:31 +02:00
5af27a82c3
gnu: owncloud-client: Update to 2.3.4.
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* gnu/packages/sync.scm (owncloud-client): Update to 2.3.4.
2017-11-18 21:50:11 +02:00
6563d58c7e
gnu: owncloud-client: Don't check for updates.
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* gnu/packages/sync.scm (owncloud-client)[source]: Add patch.
* gnu/packages/patches/owncloud-disable-updatecheck.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-11-18 21:50:08 +02:00
42ca84be92
gnu: libreoffice: Remove GTK+ 2.
...
LibreOffice doesn't need to use both GTK+ 2 and GTK+ 3.
* gnu/packages/libreoffice.scm (libreoffice)[inputs]: Remove gtk+-2.
[configure-flags]: Add "--disable-gtk".
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-18 12:30:18 -05:00
a7963b495e
gnu: libassuan: Update to 2.4.4.
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* gnu/packages/gnupg.scm (libassuan): Update to 2.4.4.
2017-11-18 12:21:35 -05:00
05c80e61a2
gnu: mes: Update to 0.11.
...
* gnu/packages/mes.scm (mes): Update to 0.11.
2017-11-18 17:04:56 +01:00
3182a1d2f1
gnu: audacity: Update to 2.2.0.
...
* gnu/packages/patches/audacity-build-with-system-portaudio.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/audio.scm (audacity): Update to 2.2.0.
[source]: Add patch to build with system portaudio; add snippet to remove most
bundled libraries.
[inputs]: Replace "gtk+-2" with "gtk+", replace "wxwidgets-gtk2" with
"wxwidgets"; remove "libsbsms"; add "suil" and "portmidi".
[arguments]: Adjust configure flags to avoid using bundled libraries; remove
phase "autoreconf"; add phases "fix-sbsms-check" and "use-upstream-headers".
2017-11-18 16:07:57 +01:00
218d1ddef8
gnu: java-mail: Let build phase return boolean.
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* gnu/packages/java.scm (java-mail)[arguments]: Let build phase
"move-version.java" return #t.
2017-11-18 12:58:08 +01:00
04e91134af
gnu: bitshuffle-for-snappy: Simplify.
...
* gnu/packages/compression.scm (bitshuffle-for-snappy)[arguments]: Simplify
Makefile generation.
2017-11-18 12:56:35 +01:00
b8e2af9a05
gnu: bitshuffle: Let build phase return #t.
...
* gnu/packages/compression.scm (bitshuffle)[arguments]: Let
"make-required-dir" return #t.
2017-11-18 12:51:22 +01:00
653f2b92b9
gnu: python-pylast: Update to 2.0.0.
...
* gnu/packages/music.scm (python-pylast): Update to 2.0.0.
[native-inputs]: Add python-pycodestyle and python-flaky.
2017-11-18 12:45:19 +01:00
33dc54b08c
gnu: Move date/time packages from python.scm to time.scm.
...
* gnu/packages/python.scm (python-pytz, python2-pytz, python-dateutil,
python2-dateutil, python-parsedatetime, python2-parsedatetime,
python-tzlocal, python-isodate, python2-isodate, python-iso8601,
python2-iso8601, python-monotonic, python2-monotonic, python-pyrfc3339,
python2-pyrfc3339, python-arrow, python2-arrow, python-aniso8601,
python2-aniso8601): Move from here...
* gnu/packages/time.scm: ...to here.
* gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/django.scm,
gnu/packages/ebook.scm,
gnu/packages/gnome.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/mail.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/tls.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm: Adjust accordingly.
2017-11-18 12:45:19 +01:00
762b5a89c2
gnu: Move more testing packages from python.scm to check.scm.
...
* gnu/packages/python.scm (python-flexmock, python2-flexmock,
python-freezegun, python2-freezegun, python-flaky, python2-flaky): Move from
here...
* gnu/packages/check.scm: ...to here.
2017-11-18 12:45:19 +01:00
a0837294ab
gnu: Add java-plexus-container-default.
...
* gnu/packages/java.scm (java-plexus-container-default): New variable.
2017-11-18 11:30:25 +01:00
b51df3ca6f
gnu: Add java-plexus-archiver.
...
* gnu/packages/java.scm (java-plexus-archiver): New variable.
2017-11-18 11:30:15 +01:00
0858b9dc9d
gnu: Add java-plexus-io.
...
* gnu/packages/java.scm (java-plexus-io): New variable.
2017-11-18 11:30:13 +01:00
0726d4ea7c
gnu: Add java-plexus-container-default-bootstrap.
...
* gnu/packages/java.scm (java-plexus-container-default-bootstrap): New
variable.
2017-11-18 11:30:10 +01:00
b80027e5e7
gnu: Add java-tukaani-xz.
...
* gnu/packages/java.scm (java-tukaani-xz): New variable.
2017-11-18 11:30:08 +01:00
78745d331d
gnu: Add java-geronimo-xbean-reflect.
...
* gnu/packages/java.scm (java-geronimo-xbean-reflect): New variable.
2017-11-18 11:30:05 +01:00
0b54e190ab
gnu: Add java-jdom.
...
* gnu/packages/java.scm (java-jdom): New variable.
2017-11-18 11:30:03 +01:00
2caf873e86
gnu: Add java-log4j-1.2-api.
...
* gnu/packages/java.scm (java-log4j-1.2-api): New variable.
2017-11-18 11:30:01 +01:00
dfef4231f7
gnu: Add java-log4j-core.
...
* gnu/packages/java.scm (java-log4j-core): New variable.
2017-11-18 11:29:58 +01:00
46c6905a22
gnu: Add java-kafka-clients.
...
* gnu/packages/java.scm (java-kafka-clients): New variable.
2017-11-18 11:29:55 +01:00
5aa2f3f44b
gnu: Add java-commons-beanutils.
...
* gnu/packages/java.scm (java-commons-beanutils): New variable.
2017-11-18 11:29:53 +01:00
229a9864b6
gnu: Add java-commons-collections.
...
* gnu/packages/java.scm (java-commons-collections): New variable.
2017-11-18 11:29:51 +01:00
51263ff5d2
gnu: Add java-commons-csv.
...
* gnu/packages/java.scm (java-commons-csv): New variable.
2017-11-18 11:29:48 +01:00
217b20e4db
gnu: Add java-jeromq.
...
* gnu/packages/java.scm (java-jeromq): New variable.
2017-11-18 11:29:45 +01:00
3ff47c6665
gnu: Add java-mail.
...
* gnu/packages/java.scm (java-mail): New variable.
2017-11-18 11:29:42 +01:00
5fb3e82217
gnu: Add java-jboss-jms-api-spec.
...
* gnu/packages/java.scm (java-jboss-jms-api-spec): New variable.
2017-11-18 11:29:38 +01:00
823997e969
gnu: Add java-iq80-snappy.
...
* gnu/packages/compression.scm (java-iq80-snappy): New variable.
2017-11-18 11:29:34 +01:00
cea8346688
gnu: Add java-snappy.
...
* gnu/packages/compression.scm (java-snappy): New variable.
2017-11-18 11:29:31 +01:00
9869bb1296
gnu: Add bitshuffle.
...
* gnu/packages/compression.scm (bitshuffle): New variable.
2017-11-18 11:29:25 +01:00
c5a8ecb6d3
gnu: Remove duplicates from (gnu packages tex).
...
* gnu/packages/tex.scm (texlive-latex-hyperref, texlive-latex-fancyvrb):
Remove duplicates.
2017-11-18 11:18:41 +01:00
261b38a978
gnu: r-genomeinfodbdata: Update to 0.99.1.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 0.99.1.
2017-11-18 11:18:41 +01:00
592f4a9434
gnu: r-go-db: Update to 3.5.0.
...
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.5.0.
2017-11-18 11:18:41 +01:00
e4664290ce
gnu: r-org-ce-eg-db: Update to 3.5.0.
...
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.5.0.
2017-11-18 11:18:40 +01:00
19fc299f68
gnu: r-org-dm-eg-db: Update to 3.5.0.
...
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.5.0.
2017-11-18 11:18:40 +01:00
f3569f5218
gnu: r-org-mm-eg-db: Update to 3.5.0.
...
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.5.0.
2017-11-18 11:18:40 +01:00
57dc9b58db
gnu: r-genomationdata: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.10.0.
2017-11-18 11:18:39 +01:00
9ef9c6489f
gnu: Remove duplicates from (gnu packages statistics).
...
* gnu/packages/statistics.scm (r-cluster, r-codetools, r-kernsmooth): Remove
duplicates.
2017-11-18 11:18:39 +01:00
9c2d0a0369
gnu: Remove duplicate from (gnu packages gnupg).
...
* gnu/packages/gnupg.scm (perl-gnupg-interface): Remove duplicate.
2017-11-18 11:18:39 +01:00
90dbd984f8
gnu: Remove duplicate from (gnu packages bioinformatics).
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Remove duplicate.
2017-11-18 11:18:39 +01:00
c151b0b633
gnu: Remove duplicate from (gnu packages cran).
...
* gnu/packages/cran.scm (r-bbmle): Remove duplicate.
2017-11-18 11:18:38 +01:00
4982d0ac41
gnu: Remove duplicates from (gnu packages java).
...
* gnu/packages/java.scm (java-commons-net, java-asm): Remove duplicates.
2017-11-18 11:18:38 +01:00
676507e388
gnu: r-org-hs-eg-db: Clarify description.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db)[description]: Clarify.
2017-11-18 11:18:38 +01:00
d595fed33d
gnu: r-org-hs-eg-db: Update to 3.5.0.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.5.0.
2017-11-18 11:18:37 +01:00
ccedfd3a43
gnu: r-org-hs-eg-db: Remove duplicate package definition.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Remove duplicate variable.
2017-11-18 11:18:37 +01:00
b9f23702eb
gnu: linux-libre: Remove Tegra DRM from arm configuration.
...
The code fails to compile on armhf using our configuration.
See <https://patchwork.kernel.org/patch/9688615/ > for details.
* gnu/packages/aux-files/linux-libre/4.14-arm.conf: Remove Tegra DRM support.
2017-11-18 04:31:32 -05:00
f10120d40b
gnu: linux-libre: Remove Nouveau from arm configuration.
...
The Nouveau code fails to compile on armhf with our configuration.
* gnu/packages/aux-files/linux-libre/4.14-arm.conf: Disable Nouveau.
2017-11-18 04:30:45 -05:00
b3b07df403
gnu: dino: Update to 0.0-2-2a514d096.
...
* gnu/packages/messaging.scm (dino): Update to 0.0-2-2a514d096.
[source]: Do not fetch libsignal-protocol-c submodule.
[arguments]: Add phase "unpack-sources" to unpack our sources for
libsignal-protocol-c.
[native-inputs]: Add "libsignal-protocol-c-source".
2017-11-18 07:44:27 +01:00
25811886f1
gnu: vim: Update to 8.0.1300.
...
* gnu/packages/vim.scm (vim): Update to 8.0.1300.
2017-11-17 18:25:16 -05:00
40f372af3e
gnu: tuxguitar: Build with icedtea-8.
...
* gnu/packages/music.scm (tuxguitar)[arguments]: Use icedtea-8.
2017-11-17 23:18:50 +01:00
8710d4dd73
gnu: java-swt: Update to 4.7.1a.
...
* gnu/packages/java.scm (java-swt): Update to 4.7.1a.
[arguments]: Build with icedtea-8.
[inputs]: Remove "icecat".
2017-11-17 23:18:50 +01:00
d72f76df11
gnu: eolie: Update to 0.9.12.
...
* gnu/packages/gnome.scm (eolie): Update to 0.9.12.
[inputs]: Add python-dateutil.
2017-11-17 23:18:50 +01:00
a8714bf680
gnu: Move database packages from python.scm to databases.scm.
...
* gnu/packages/python.scm (python-ccm, python2-ccm, python2-pysqlite,
python-sqlalchemy, python2-sqlalchemy, python-sqlalchemy-utils,
python2-sqlalchemy-utils, python-alembic, python2-alembic,
python-pickleshare, python2-pickleshare, python-apsw, python2-apsw,
python2-neo4j-driver, python2-py2neo, python-psycopg2, python2-psycopg2,
python-sadisplay, python2-sadisplay, python-mysqlclient,
python2-mysqlclient, python-hiredis, python2-hiredis, python-fakeredis,
python2-fakeredis, python-redis, python2-redis, python-rq, python2-rq,
python-trollius-redis, python2-trollius-redis, python-sqlparse,
python2-sqlparse, python-sql, python2-sql): Move from here...
* gnu/packages/databases.scm: ...to here.
* gnu/packages/tryton.scm,
gnu/packages/python-web.scm,
gnu/packages/nutrition.scm,
gnu/packages/medical.scm: Adjust accordingly.
2017-11-17 22:36:27 +01:00
be6eb2f1e6
gnu: python-scikit-learn: Move from python.scm to machine-learning.scm.
...
* gnu/packages/python.scm (python-scikit-learn, python2-scikit-learn): Move
from here...
* gnu/packages/machine-learning.scm: ...to here.
2017-11-17 22:36:26 +01:00
98c6a02573
gnu: Move more web packages from python.scm to python-web.scm.
...
* gnu/packages/python.scm (python-pastescript, python2-pastescript,
python-paste, python2-paste, python-werkzeug, python2-werkzeug, python-bottle,
python2-bottle, python-wtforms, python2-wtforms): Move from here...
* gnu/packages/python-web.scm: ...to here.
2017-11-17 22:36:26 +01:00
ac257f127a
gnu: Move testing packages from python.scm to check.scm.
...
* gnu/packages/python.scm (python-behave-web-api, python2-behave-web-api,
python-mock, python2-mock, python-mock-2, python-nose, python2-nose,
python-nose2, python2-nose2, python-unittest2, python2-unittest2,
python-pytest, python2-pytest, python-pytest-3.0, python2-pytest-3.0,
python-pytest-cov, python2-pytest-cov, python-pytest-runner,
python2-pytest-runner, python-pytest-mock, python2-pytest-mock,
python-pytest-xdist, python2-pytest-xdist, python-scripttest,
python2-scripttest, python-testtools, python2-testtools, python-testscenarios,
python2-testscenarios, python-testresources, python2-testresources,
python-subunit, python2-subunit, python-fixtures, python2-fixtures,
python-testrepository, python2-testrepository, python-coverage,
python2-coverage, python-cov-core, python2-cov-core, python-testpath,
python2-testpath, python-testlib, python2-testlib, python-pytest-cache,
python2-pytest-cache, python-pytest-localserver, python-pytest-xprocess,
python-pytest-subtesthack, python2-pytest-subtesthack, python-hypothesis,
python2-hypothesis, python-lit, python2-lit, python-pytest-pep8,
python2-pytest-pep8, python-pytest-flakes, python2-pytest-flakes,
python2-coverage-test-runner, python-pylint, python2-pylint,
python-paramunittest, python2-python-paramunittest, python-pytest-warnings,
python2-pytest-warnings, python-pytest-capturelog, python2-pytest-capturelog,
python-pytest-catchlog, python2-pytest-catchlog, python-nosexcover,
python2-nosexcover, python-discover, python2-discover, behave, python-rednose,
python2-rednose, python-nose-randomly, python2-nose-randomly,
python-nose-timer, python2-nose-timer): Move from here...
* gnu/packages/check.scm: ...to here.
* gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/backup.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/calendar.scm,
gnu/packages/dav.scm,
gnu/packages/django.scm,
gnu/packages/freedesktop.scm,
gnu/packages/haskell.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/ldc.scm,
gnu/packages/libffi.scm,
gnu/packages/mail.scm,
gnu/packages/mpd.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm: Adjust accordingly.
2017-11-17 22:36:26 +01:00
ff49437df7
gnu: Add qmidiroute.
...
* gnu/packages/music.scm (qmidiroute): New variable.
2017-11-17 22:36:26 +01:00
fc8d6953e2
gnu: cheese: Update to 3.26.0.
...
* gnu/packages/gnome.scm (cheese): Update to 3.26.0
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-17 16:34:28 -05:00
3fe4c9dcc4
gnu: Add emacs-transmission.
...
* gnu/packages/emacs.scm (emacs-transmission): New variable.
2017-11-17 13:37:12 +03:00
669be6acfe
gnu: cool-retro-term: Fix qml path.
...
* gnu/packages/terminals.scm (cool-retro-term): Fix qml path.
2017-11-17 13:28:08 +03:00
9bc646d053
gnu: eog: Update to 3.26.2.
...
* gnu/packages/gnome.scm (eog): Update to 3.26.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-17 11:00:20 +01:00
cf8ec425d5
gnu: gnome-disk-utility: Update to 3.26.2.
...
* gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.26.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-17 11:00:18 +01:00
64a4d39403
gnu: nftables: Update to 0.8.
...
* gnu/packages/linux.scm (nftables): Update to 0.8.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-17 10:59:21 +01:00
284d7da3bb
gnu: libnftnl: Update to 1.0.8.
...
* gnu/packages/linux.scm (libnftnl): Update to 1.0.8.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-17 10:59:00 +01:00
ef2c6b4095
gnu: Add qucs-s.
...
* gnu/packages/engineering.scm (qucs-s): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-16 10:53:06 +01:00
0b4dbb401c
gnu: syslinux: Add explicit dependency on mtools.
...
Suggested by Adam Van Ymeren <adam@vany.ca>
at <https://bugs.gnu.org/28974 >.
* gnu/packages/bootloaders.scm (syslinux)[inputs]: Add MTOOLS.
[ARGUMENTS]: In 'patch-files' phase, patch references to 'mcopy' and
'mattrib'.
2017-11-16 10:43:40 +01:00
afc4382316
gnu: wget: Add wget2.
...
* gnu/packages/wget.scm (wget2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-16 10:27:42 +01:00
15712cc9e3
gnu: spectrwm: Update to 3.1.0.
...
* gnu/packages/wm.scm (spectrwm): Update to 3.1.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-16 10:25:40 +01:00
42e52605d4
gnu: xpra: Fix paths.
...
* gnu/packages/xorg.scm (xpra): [arguments]: Add '--without-opengl',
'--without-Xdummy' and '--without-Xdummy-wrapper' to #:configure-flags. Add
substitutions to #phases for proper paths.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-16 10:21:40 +01:00
d9cd1c2272
gnu: messaging: Enable OMEMO for dino.
...
* gnu/packages/messaging.scm (dino): Update to commit
f6ac5bbd26638412a2289fd1d28ef12de1d7e8b5.
[inputs]: Add libsignal-protocol-c and libgcrypt.
[arguments]: Change #configure-flags to "-DSHARED_SIGNAL_PROTOCOL=yes".
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-16 09:50:06 +01:00
0d549f60df
gnu: messaging: Add libsignal-protocol-c.
...
* gnu/packages/messaging.scm (libsignal-protocol-c): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-16 09:42:45 +01:00
589e3f4e70
gnu: Move more packages from python to python-web.
...
* gnu/packages/python.scm (python-requests, python2-requests)
(python-requests-2.7, python-oauthlib, python2-oauthlib)
(python-furl, python2-furl, python-wsgi-intercept)
(python-publicsuffix, python2-publicsuffix)
(python-publicsuffix2, python2-publicsuffix2): Move to...
* gnu/packages/python-web.scm: ... here.
* gnu/packages/bioinformatics.scm, gnu/packages/finance.scm:
gnu/packages/maths.scm, gnu/packages/terminals.scm,
gnu/packages/video.scm, gnu/packages/virtualization.scm: Adjust
accordingly.
2017-11-16 08:45:15 +01:00
b95c17c58b
gnu: Move Python packages from crypto to python-crypto.
...
* gnu/packages/crypto.scm (python-asn1crypto, python2-asn1crypto)
(python-pynacl, python2-roca-detect): Move to python-crypto.scm.
* gnu/packages/gnupg.scm (python2-pgpdump): Move to python-crypto.scm.
* gnu/packages/python-crypto.scm (python-asn1crypto, python2-asn1crypto)
(python-pynacl, python2-pgpdump, python2-roca-detect): New variables.
2017-11-16 08:45:15 +01:00
cc6f49121b
gnu: Move crypto packages from python to python-crypto.
...
* gnu/packages/python.scm (python-passlib, python2-passlib)
(python-py-bcrypt, python2-py-bcrypt)
(python-paramiko, python2-paramiko, python-ecdsa, python2-ecdsa)
(python-pycrypto, python2-pycrypto, python-keyring, python2-keyring)
(python-certifi, python2-certifi)
(python-cryptography-vectors, python2-cryptography-vectors)
(python-cryptography, python2-cryptography)
(python-pyopenssl, python2-pyopenssl)
(python-axolotl-curve25519, python2-axolotl-curve25519)
(python-axolotl, python2-axolotl, python2-slowaes)
(python-pyaes, python2-pyaes): Move to...
* gnu/packages/python-crypto.scm: ... here. New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/admin.scm, gnu/packages/backup.scm,
gnu/packages/crypto.scm, gnu/packages/finance.scm,
gnu/packages/irc.scm, gnu/packages/jrnl.scm,
gnu/packages/messaging.scm, gnu/packages/openstack.scm,
gnu/packages/python-web.scm, gnu/packages/tls.scm,
gnu/packages/xorg.scm: Adjust accordingly.
2017-11-16 08:45:15 +01:00
c114c9c5d8
gnu: linux-libre: Update to 4.14.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.
(%linux-libre-hash): Update hash.
* gnu/packages/aux-files/linux-libre/4.13-arm.conf,
gnu/packages/aux-files/linux-libre/4.13-i686.conf,
gnu/packages/aux-files/linux-libre/4.13-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.14-arm.conf,
gnu/packages/aux-files/linux-libre/4.14-i686.conf,
gnu/packages/aux-files/linux-libre/4.14-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Update accordingly.
2017-11-16 00:03:34 -05:00
811a24ca5f
gnu: linux-libre@4.9: Update to 4.9.62.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.62.
2017-11-16 00:03:00 -05:00
6f0e2c2b4a
gnu: linux-libre@4.4: Update to 4.4.98.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.98.
2017-11-16 00:02:24 -05:00
f1e3214534
gnu: icecat: Add more fixes from upstream mozilla-esr52.
...
Add fixes for CVE-2017-7830, the remaining 1/2 changesets for CVE-2017-7828,
the remaining 1/19 changesets for CVE-2017-7826, and selected other fixes.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
* gnu/packages/patches/icecat-bug-1348660-pt5.patch,
gnu/packages/patches/icecat-bug-1415133.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-11-16 00:01:46 -05:00
6a71fa6faa
gnu: icecat: Label patches to reflect CVE assignments.
...
Document that we include 18/19 changesets for CVE-2017-7826, and 1/2
changesets for CVE-2017-7828.
* gnu/packages/gnuzilla.scm (icecat)[source]: Rename patches to reflect CVE
assignments.
2017-11-16 00:01:21 -05:00
ed0f9f53ab
gnu: iproute2: Update to 4.14.1.
...
* gnu/packages/linux.scm (iproute): Update to 4.14.1.
2017-11-15 12:45:26 +01:00
7c1adf0090
gnu: gnucash: Use HTTPS for www.gnucash.org.
...
* gnu/packages/gnucash.scm (gnucash, gnucash-docs)[home-page]: Use HTTPS.
2017-11-15 03:19:19 +01:00
471ce31cd7
gnu: gnucash: Update to 2.6.18.
...
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.18.
2017-11-15 03:19:18 +01:00
c27f48573e
gnu: youtube-dl: Update to 2017.11.15.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.11.15.
2017-11-15 03:19:18 +01:00
99adfd7d3d
gnu: geoclue: Use HTTPS for home page.
...
* gnu/packages/gnome.scm (geoclue)[home-page]: Use HTTPS.
2017-11-15 03:19:18 +01:00
dba7028f14
gnu: geoclue: Update to 2.4.7.
...
* gnu/packages/gnome.scm (geoclue): Update to 2.4.7.
2017-11-15 03:19:17 +01:00
06d2a63c15
gnu: aria2: Update to 1.33.1.
...
* gnu/packages/bittorrent.scm (aria2): Update 1.33.1.
2017-11-15 03:19:17 +01:00
c115b2dbe0
gnu: smartmontools: Mark up description.
...
* gnu/packages/admin.scm (smartmontools)[description]: Use @dfn.
2017-11-15 03:19:17 +01:00
bd2eedd116
gnu: smartmontools: Update to 6.6.
...
* gnu/packages/admin.scm (smartmontools): Update to 6.6.
2017-11-15 03:19:16 +01:00
8c2dcedd1d
gnu: devhelp: Update to 3.26.0.
...
* gnu/packages/gnome.scm (devhelp): Update to 3.26.0.
2017-11-14 17:50:33 -05:00
1697307185
gnu: Add guile-wiredtiger.
...
* gnu/packages/databases.scm (guile-wiredtiger): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-14 23:46:53 +01:00
52b617ffeb
gnu: Update awscli to 1.11.185.
...
* gnu/packages/python-web.scm (awscli): Update to 1.11.185.
2017-11-14 14:20:42 -05:00
31d9e454ad
gnu: gnome-calculator: Update to 3.26.0.
...
* gnu/packages/gnome.scm (gnome-calculator): Update to 3.26.0.
2017-11-14 14:12:42 -05:00
a5a22d7b14
gnu: gnome-system-monitor: Update to 3.26.0.
...
* gnu/packages/gnome.scm (gnome-system-monitor): Update to 3.26.0.
2017-11-14 13:47:03 -05:00
85a9ffcbf4
gnu: exim: Use HTTPS for home page.
...
* gnu/packages/mail.scm (exim)[home-page]: Use HTTPS.
2017-11-14 04:06:53 +01:00
58b8d1b39f
gnu: iproute2: Update to 4.14.0.
...
* gnu/packages/linux.scm (iproute): Update to 4.14.0.
2017-11-14 04:06:53 +01:00
1b2f753d9c
gnu: Move web packages from python to python-web.
...
This is in part to address <https://bugs.gnu.org/27284 >.
* gnu/packages/python.scm (python-httplib2, python2-httplib2)
(python-sockjs-tornado, python2-sockjs-tornado)
(python-flask-babel, python2-flask-babel)
(python-html5lib, python2-html5lib)
(python-html5lib-0.9, python2-html5lib-0.9)
(python-html5-parser, python2-html5-parser)
(python-webencodings, python2-webencodings)
(python-openid, python2-openid, python-cssutils, python2-cssutils)
(python-cssselect, python2-cssutils)
(python-openid-cla, python2-openid-cla)
(python-openid-teams, python2-openid-teams)
(python-tornado, python2-tornado)
(python-tornado-http-auth, python-terminado, python2-terminado)
(python-webob, python2-webob, python-zope-event, python2-zope-event)
(python-zope-interface, python2-zope-interface)
(python-zope-exceptions, python2-zope-exceptions)
(python-zope-testing, python2-zope-testing)
(python-zope-testrunner, python2-zope-testrunner)
(python-zope-i18nmessageid, python2-zope-i18nmessageid)
(python-zope-schema, python2-zope-schema)
(python-zope-configuration, python2-zope-configuration)
(python-zope-proxy, python2-zope-proxy)
(python-zope-location, python2-zope-location)
(python-zope-security, python2-zope-security)
(python-zope-component, python2-zope-component)
(python-ndg-httpsclient, python2-ndg-httpsclient)
(python-websocket-client, python2-websocket-client)
(python-requests-toolbelt, python2-requests-toolbelt)
(python-rauth, python2-rauth, python-urllib3, python2-urllib3)
(awscli, python-wsgiproxy2, python2-wsgiproxy2)
(python-pastedeploy, python2-pastedeploy)
(python-webtest, python2-webtest, python-flask, python2-flask)
(python-flast-wtf, python2-flask-wtf)
(python-flask-multistatic, python2-flask-multistatic)
(python-cookies, python2-cookies)
(python-responses, python2-responses)
(python-geventhttpclient, python2-geventhttpclient)
(python-requests-oauthlib, python2-requests-oauthlib)
(python-url, python2-url, python-cachecontrol, python2-cachecontrol)
(python-betamax, python2-betamax)
(python-betamax-matchers, python2-betamax-matchers)
(python-s3transfer, python2-s3transfer)
(python-flask-restful, python-flask-basicauth)
(python-flask-sqlalchemy, python-flask-restplus)
(python-flask-restful-swagger, python-htmlmin, python2-htmlmin)
(python-flask-htmlmin, python2-flask-htmlmin)
(python-flask-login, python2-flask-login)
(python-oauth2client, python-flask-oidc)
(python-webassets, python-cssmin, python2-cssmin)
(python-elasticsearch, python2-elasticsearch)
(python-flask-script, python2-flask-script)
(python-flask-migrate, python2-flask-migrate)
(python-genshi, python2-genshi)
(python-flask-principal, python2-flask-principal)
(python-flask-httpauth, python2-flask-httpauth)
(python-uritemplate, python2-uritemplate): Move to...
* gnu/packages/python-web.scm: ... here. New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/admin.scm, gnu/packages/backup.scm,
gnu/packages/dav.scm, gnu/packages/django.scm,
gnu/packages/docker.scm, gnu/packages/ebook.scm,
gnu/packages/logging.scm, gnu/packages/mail.scm,
gnu/packages/music.scm, gnu/packages/openstack.scm,
gnu/packages/package-management.scm, gnu/packages/rdf.scm,
gnu/packages/tls.scm, gnu/packages/tor.scm,
gnu/packages/tryton.scm, gnu/packages/version-control.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm: Adjust accordingly.
2017-11-13 23:41:01 +01:00
a68e586097
gnu: diamond: Update to 0.9.13.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.13.
2017-11-14 08:25:43 +10:00
5ccde2079e
gnu: Move test packages from perl to perl-check.
...
* gnu/packages/perl.scm (perl-test2-bundle-extended,
perl-test2-plugin-nowarnings, perl-test-base, perl-test-class,
perl-test-class-most, perl-test-cleannamespaces, perl-test-command,
perl-test-cpan-meta, perl-test-cpan-meta-json, perl-test-deep,
perl-test-differences, perl-test-directory, perl-test-eol,
perl-test-exception, perl-test-fatal, perl-test-file-sharedir-dist,
perl-test-files, perl-test-harness, perl-test-leaktrace,
perl-test-longstring, perl-test-manifest, perl-test-memory-cycle,
perl-test-mockobject, perl-test-mocktime, perl-test-most, perl-test-needs,
perl-test-notabs, perl-test-nowarnings, perl-test-number-delta,
perl-test-output, perl-test-pod, perl-test-pod-coverage, perl-test-requires,
perl-test-script, perl-test-sharedfork, perl-test-simple, perl-test-taint,
perl-test-tester, perl-test-trap, perl-test-utf8, perl-test-warn,
perl-test-warnings, perl-test-without-module, perl-test-writevariants,
perl-test-yaml, perl-test-trailingspace): Move variables to ...
* gnu/packages/perl-check.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/admin.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/glib.scm,
gnu/packages/gnupg.scm,
gnu/packages/image-viewers.scm,
gnu/packages/language.scm,
gnu/packages/networking.scm,
gnu/packages/package-management.scm,
gnu/packages/perl.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/version-control.scm,
gnu/packages/web.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm: Use perl-check module.
2017-11-13 23:03:01 +01:00
587d175266
gnu: ghc-tls: Move to (gnu packages tls).
...
* gnu/packages/haskell.scm (ghc-tls): Move from here...
* gnu/packages/tls.scm (ghc-tls): ...to here.
* gnu/packages/haskell-web.scm: Use (gnu packages tls).
2017-11-13 18:40:55 +01:00
f24eba89f4
gnu: Move crypto packages from haskell to haskell-crypto.
...
* gnu/packages/haskell.scm (ghc-asn1-types, ghc-asn1-encoding, ghc-asn1-parse,
ghc-crypto-api, ghc-crypto-api-tests, ghc-cryptohash, ghc-cryptohash-md5,
ghc-cryptohash-sha1, ghc-cryptonite, ghc-digest, ghc-entropy, ghc-pem,
ghc-puremd5, ghc-sha, ghc-x509, ghc-x509-store, ghc-x509-validation,
ghc-x509-system): Move variables to ...
* gnu/packages/haskell-crypto.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/haskell-web.scm,
gnu/packages/version-control.scm: Include haskell-crypto module.
2017-11-13 18:36:51 +01:00
44b7374a22
gnu: Move web packages from haskell to haskell-web.
...
* gnu/packages/haskell.scm (ghc-tagsoup, ghc-cookie, ghc-http-types, ghc-http,
ghc-http-client, ghc-http-client-tls, ghc-http-date, ghc-http2,
ghc-http-conduit, ghc-wai, ghc-wai-logger, ghc-wai-extra, ghc-wai-conduit,
ghc-warp, ghc-warp-tls, ghc-xss-sanitize, ghc-css-text, ghc-mime-types,
ghc-html, ghc-xhtml, ghc-blaze-html, ghc-aeson, ghc-aeson-pretty,
ghc-aeson-qq, ghc-multipart): Move variables to ...
* gnu/packages/haskell-web.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/idris.scm,
gnu/packages/version-control.scm,
gnu/packages/wm.scm: Include haskell-web module.
2017-11-13 18:12:37 +01:00
a06b9b5007
gnu: Move testing packages from haskell to haskell-check.
...
* gnu/packages/haskell.scm (ghc-clock-bootstrap, ghc-tasty-ant-xml,
ghc-tasty-smallcheck, ghc-tasty-quickcheck, ghc-tasty-golden, ghc-tasty,
ghc-tasty-hunit, ghc-tasty-kat, ghc-tasty-th, ghc-tasty-rerun,
ghc-quickcheck-instances, ghc-quickcheck-unicode, ghc-quickcheck-io,
ghc-quickcheck, ghc-test-framework, ghc-test-framework-hunit,
ghc-test-framework-quickcheck2, ghc-test-framework-th, ghc-hunit,
hspec-discover, ghc-hspec-core, ghc-hspec-meta, ghc-hspec, ghc-hspec-contrib,
ghc-hspec-expectations): Move variables to ...
* gnu/packages/haskell-check.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/idris.scm,
gnu/packages/version-control.scm,
gnu/packages/wm.scm: Include haskell-check module.
2017-11-13 18:12:27 +01:00
d4735e8c65
gnu: cd-hit: Update source tarball hash.
...
* gnu/packages/bioinformatics.scm (cd-hit)[source]: Update hash.
2017-11-13 16:02:35 +01:00
62f0806f4c
Revert "gnu: totem: Enable parallel build."
...
This reverts commit e5f748a6c0
2017-11-13 07:47:23 -05:00
b918473189
gnu: guix: Update snapshot.
...
* gnu/packages/package-management.scm (guix): Update to ff23b47
2017-11-13 11:31:27 +01:00
6b7490b340
gnu: ibus: Update to 1.5.17.
...
* gnu/packages/ibus.scm (ibus): Update to 1.5.17.
2017-11-13 10:19:26 +02:00
ce12b31157
gnu: ibus: Enable wayland support.
...
* gnu/packages/ibus.scm (ibus)[arguments]: Add configure flag to enable
wayland support.
[inputs]: Add wayland.
2017-11-13 10:19:26 +02:00
f35bb0711c
gnu: libsoup: Update to 2.60.2.
...
* gnu/packages/gnome.scm (libsoup): Update to 2.60.2.
2017-11-12 21:20:24 -05:00
c0d1fa64d0
gnu: imagemagick: Update to 6.9.9-23.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-23.
2017-11-12 17:50:01 -05:00
2560aa7adb
gnu: Remove unrar.
...
This package is abandoned upstream and contains serious bugs:
http://seclists.org/oss-sec/2017/q3/329
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14120
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14121
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14122
* gnu/packages/compression.scm (unrar): Remove variable.
2017-11-12 16:17:08 -05:00
8420c7a356
gnu: linux-libre: Change URL to HTTPS.
...
* gnu/packages/linux.scm (linux-libre): Change URL to HTTPS.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-12 15:46:44 -05:00
1650cf9284
gnu: mupdf: Unbundle mujs.
...
* gnu/packages/pdf.scm (mupdf)[source]: Remove bundled mujs.
[inputs]: Add mujs.
2017-11-12 19:39:21 +02:00
89ba894eb3
gnu: Add mujs.
...
* gnu/packages/javascript.scm (mujs): New variable.
2017-11-12 19:39:20 +02:00
76379dcace
gnu: mupdf: Use https.
...
* gnu/packages/pdf.scm (mupdf)[source]: Use https.
[home-page]: Same.
2017-11-12 19:39:20 +02:00
31f248fa2c
gnu: pdf.scm: Arrange modules alphabetically.
...
* gnu/packages/pdf.scm: Arrange modules alphabetically.
2017-11-12 19:39:17 +02:00
b07bfd06ee
gnu: lash: Don't build static libraries.
...
* gnu/packages/audio.scm (lash)[arguments]: Add configure-flag to
disable static libraries.
2017-11-12 12:04:49 +02:00
44df780768
gnu: lash: Don't build lashd.
...
This fixes bug#28174.
* gnu/packages/audio.scm (lash)[arguments]: Add phase to skip building lashd.
2017-11-12 12:04:46 +02:00
c7b433de47
gnu: glib-networking: Update to 2.54.1.
...
* gnu/packages/gnome.scm (glib-networking): Update to 2.54.1.
2017-11-12 01:17:10 -05:00
1e2a36e1b0
gnu: ffmpeg: Reduce the size of the closure.
...
* gnu/packages/video.scm (ffmpeg)[arguments]: Add new configure flags to
disable the html man pages and the static libraries.
2017-11-12 07:11:29 +02:00
7e0d513fb9
gnu: mupdf: Use Texinfo for the description.
...
* gnu/packages/pdf.scm (mupdf)[description]: Use Texinfo to mark up the
description.
2017-11-12 07:11:25 +02:00
b7ca42aa99
gnu: w3m: Find an editor in the environment.
...
* gnu/packages/w3m.scm (w3m)[arguments]: Pass an empty value for --with-editor
in #:configure-flags.
[source]: Use git-file-name.
2017-11-11 23:04:39 -05:00
882d921344
gnu: mupdf: Actually fix CVE-2017-15587.
...
The original fix could be removed by an optimizing compiler.
* gnu/packages/patches/mupdf-CVE-2017-15587.patch: Revise patch.
2017-11-11 22:34:24 -05:00
07cc9245e6
gnu: libusb-compat: Use the same home page as libusb.
...
* gnu/packages/libusb.scm (libusb-compat)[home-page]: Update.
2017-11-12 03:25:49 +01:00
5ade9bc769
gnu: fcgi: Fix typo in description.
...
* gnu/packages/web.scm (fcgi)[description]: Fix typo.
2017-11-12 03:25:48 +01:00
d1b5043947
gnu: fcgi: Use archived home page fork.
...
* gnu/packages/web.scm (fcgi)[home-page]: Use archived version.
2017-11-12 03:25:48 +01:00
9c2917f9e7
gnu: lynx: Use new home page.
...
* gnu/packages/web-browsers.scm (lynx)[home-page]: Update.
2017-11-12 03:25:47 +01:00
6862e4bfe7
gnu: perl-mime-types: Update to 2.14.
...
* gnu/packages/perl.scm (perl-mime-types): Update to 2.14.
2017-11-12 03:25:47 +01:00
f9035ef213
gnu: mailutils: Update to 3.4.
...
* gnu/packages/mail.scm (mailutils): Update to 3.4.
2017-11-11 23:21:54 +01:00
cda2e2c719
gnu: emacs-emms: Update to 4.4.
...
* gnu/packages/emacs.scm (emms): Update to 4.4.
2017-11-11 23:21:54 +01:00
327df26fbf
gnu: nyacc: Update to 0.82.4.
...
* gnu/packages/mes.scm (nyacc): Update to 0.82.4.
2017-11-11 23:11:04 +01:00
4564782c3d
gnu: nvi: Build with support for Unicode text.
...
* gnu/packages/nvi.scm (nvi)[arguments]: Pass '--enable-widechar'
to #:configure-flags.
2017-11-11 12:00:37 -05:00
56f35d92f5
gnu: lvm2: Update to 2.02.176.
...
* gnu/packages/linux.scm (lvm2): Update to 2.02.176.
2017-11-11 07:40:55 +01:00
ec03062171
gnu: libstaroffice: Update to 0.0.5.
...
* gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.5.
2017-11-11 07:18:34 +01:00
45d5c80253
gnu: libvisio: Update to 0.1.6.
...
* gnu/packages/libreoffice.scm (libvisio): Update to 0.1.6.
[source](patches): Remove.
* gnu/packages/patches/libvisio-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-11 07:15:39 +01:00
7a9283a619
gnu: libetonyek: Update to 0.1.7.
...
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.7.
[source](patches): Remove.
[arguments]<#:phases>: Remove.
[native-inputs]: Remove AUTOCONF and AUTOMAKE.
* gnu/packages/patches/libetonyek-build-with-mdds-1.2.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-11 07:13:01 +01:00
074ff555ab
gnu: libreoffice: Update to 5.3.7.2 and enable GTK3.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.7.2
[source]: Change URL to HTTPS.
[inputs]: Add gtk+.
[configure-flags]: Remove "--disable-gtk3".
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-11 07:03:06 +01:00
ce1ac8eea6
gnu: python2-rpython: Update to 0.2.1.
...
* gnu/packages/python.scm (python2-rpython): Update to 0.2.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-11 07:00:22 +01:00
e65acb3124
gnu: python-sympy: Update to 1.1.1.
...
* gnu/packages/python.scm (python-sympy, python2-sympy): Update to 1.1.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-11 06:57:00 +01:00
e077e7da7f
gnu: python-sqlparse: Fix syntax error.
...
This is a follow-up to commit 8d688cd27f
2017-11-11 06:40:50 +01:00
8d688cd27f
gnu: python-sqlparse: Update to 0.2.4.
...
* gnu/packages/python.scm (python-sqlparse, python2-sqlparse): Update to
0.2.4.
[arguments]: Don't invoke ‘2to3’.
2017-11-11 05:17:59 +01:00
9629c6b4b2
gnu: cyrus-sasl: Use new home page.
...
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[home-page]: Update.
2017-11-11 05:17:58 +01:00
11ed4108fb
gnu: methylkit: Use new home page.
...
* gnu/packages/bioinformatics.scm (methylkit)[home-page]: Update.
2017-11-11 05:17:58 +01:00
7c087150ec
gnu: vsearch: Update to 2.6.0.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.6.0.
2017-11-11 09:33:16 +10:00
74c0aeb027
gnu: webkitgtk: Update to 2.18.3 [fixes CVE-2017-{13788,13798,13803}].
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.3.
2017-11-10 12:48:15 -05:00
adf7e69cab
gnu: qemu: Fix CVE-2017-{15038,15268,15289}.
...
* gnu/packages/patches/qemu-CVE-2017-15038.patch,
gnu/packages/patches/qemu-CVE-2017-15268.patch,
gnu/packages/patches/qemu-CVE-2017-15289.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2017-11-10 12:16:31 -05:00
d4d7d70912
gnu: Fix hunspell-dict-en-* dictionary installation.
...
* gnu/packages/aspell.scm (aspell-word-list)[arguments]: Install the .dic file
for all hunspell dictionaries.
2017-11-10 11:59:09 -05:00
0af4df7e61
gnu: cutadapt: Update to 1.14.
...
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.14.
2017-11-10 15:32:42 +01:00
ae451b9dc2
gnu: synergy: Fix minor problems with the package definitions.
...
* gnu/packages/synergy.scm (synergy)[source]: Return #t in the snippet.
[arguments]: Let build phases return #t; fix typo in comment.
[home-page]: Change to redirection target.
[description]: Fix typo.
2017-11-10 15:19:06 +01:00
177475cfb5
gnu: password-store: Install passmenu script.
...
* gnu/packages/password-utils (password-store)
[inputs]: Add dmenu and xdotool.
[arguments]<#:phases>['patch-passmenu-path']: New phase.
[arguments]<#:phases>['install-passmenu']: New phase.
2017-11-10 14:22:28 +01:00
011f57695a
gnu: Add Epson escpr printer driver.
...
* gnu/packages/cups.scm (escpr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-10 13:07:54 +01:00
179b7ac66d
gnu: postgresql@9.6: Update to 9.6.6 [security fixes].
...
This fixes CVE-2017-12172, CVE-2017-15098, CVE-2017-15099.
* gnu/packages/databases.scm (postgresql@9.6): Update to 9.6.6.
2017-11-10 10:24:13 +02:00
74bea6a036
gnu: linux-libre: Update to 4.13.12.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.12.
(%linux-libre-hash): Update hash.
2017-11-09 21:11:00 -05:00
4cacbf33a6
gnu: linux-libre@4.9: Update to 4.9.61.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.61.
2017-11-09 21:10:14 -05:00
3a79bd03ff
gnu: linux-libre@4.4: Update to 4.4.97.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.97.
2017-11-09 21:09:34 -05:00
f8071bea91
gnu: linux-libre@4.1: Update to 4.1.46.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.46.
2017-11-09 21:08:51 -05:00
3c3d20c8f3
gnu: libpsl: Update to 0.19.1.
...
* gnu/packages/web.scm (libpsl): Update to 0.19.1.
2017-11-10 02:37:15 +01:00
1d8e73ba67
gnu: postgresql: Update to 10.1 [security fixes].
...
Fixes CVE-2017-12172, CVE-2017-15098 and CVE-2017-15099.
* gnu/packages/databases.scm (postgresql): Update to 10.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-10 01:22:53 +01:00
e99f045cc8
gnu: Add r-directlabels.
...
* gnu/packages/statistics.scm (r-directlabels): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
d3150731a8
gnu: emacs-ahungry-theme: Update to 1.8.0.
...
* gnu/packages/emacs.scm (emacs-ahungry-theme): Update to 1.8.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
f021382be4
gnu: Add nxbelld.
...
* gnu/packages/xdisorg.scm (nxbelld): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
d8f075c3a3
gnu: %intel-compatible-systems: Re-add variable.
...
This is a follow-up to cfbe7b7f4c
2017-11-09 22:25:48 +02:00
cfbe7b7f4c
gnu: linux: Add linux-libre arm kernel.
...
* Makefile.am (AUX_FILES): Add arm config file.
* gnu/packages/aux-files/linux-libre/4.13-arm.conf: New file.
* gnu/packages/linux.scm (%intel-compatible-systems): Rename to
%linux-compatible-systems and add "armhf-linux".
(linux-libre): Adapt consequently.
The config file for arm is taken from debian armmp kernel. It's a generic
firmware for ARMv7 multiplatform compatible SoCs.
2017-11-09 20:35:11 +01:00
3694a9b33b
gnu: chromaprint: Update to 1.4.2.
...
* gnu/packages/mp3.scm (chromaprint): Update to 1.4.2.
2017-11-09 13:23:39 -05:00
ad9b8987f3
gnu: libwnck: Update to 3.24.1.
...
* gnu/packages/gnome.scm (libwnck): Update to 3.24.1.
2017-11-09 12:17:37 -05:00
da4a707c88
gnu: roary: Update to 3.11.0.
...
* gnu/packages/bioinformatics.scm (roary): Update to 3.11.0.
[inputs]: Add perl-digest-md5-file.
2017-11-09 18:12:32 +10:00
e5f748a6c0
gnu: totem: Enable parallel build.
...
* gnu/packages/gnome.scm (totem)[arguments]: Set #:parallel-build? to #t
implicitly.
2017-11-08 20:43:40 -05:00
8f220b7b41
gnu: tremc: Update to 0.9.0-1.9755b50.
...
* gnu/packages/bittorrent.scm (tremc): Update to 0.9.0-1.9755b50.
[version]: Use git-version.
[source]: Use git-file-name.
2017-11-08 19:32:32 -05:00
ea1f073d73
gnu: slurm: Update to 16.05.11 [fixes CVE-2017-15566].
...
* gnu/packages/parallel.scm (slurm): Update to 16.05.11.
[source]: Use the recommended download URL.
2017-11-08 19:32:31 -05:00
a3dd13ae0e
gnu: rpm: Update to 4.13.0.2 [fixes CVE-2017-{7500,7501}].
...
* gnu/packages/package-management.scm (rpm): Update to 4.13.0.2.
2017-11-08 19:00:07 -05:00
7df4194b16
gnu: python-icalendar: Update to 4.0.0.
...
* gnu/packages/python.scm (python-icalendar): Update to 4.0.0.
2017-11-08 18:36:29 -05:00
03b154f800
gnu: syncthing: Update to 0.14.40.
...
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.40.
[inputs]: Add go-github-com-zillode-notify.
2017-11-08 17:24:02 -05:00
52ff28e4aa
gnu: Add go-github-com-zillode-notify.
...
* gnu/packages/syncthing.scm (go-github-com-zillode-notify): New variable.
2017-11-08 17:24:01 -05:00
4cf6827de3
gnu: go-github-com-audriusbutkevicius-kcp-go: Update to 0.0.0-1.8ae5f52.
...
* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-kcp-go):
Update to 0.0.0-1.8ae5f52.
[propagated-inputs]: Add go-github-com-tjfoc-gmsm-sm4.
2017-11-08 17:24:01 -05:00
f44169c2a7
gnu: Add go-github-com-tjfoc-gmsm-sm4.
...
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): New variable.
2017-11-08 17:24:01 -05:00
34260a10d7
gnu: miso: Use pypi-uri.
...
* gnu/packages/bioinformatics.scm (miso)[source]: Use pypi-uri.
2017-11-08 17:41:08 +01:00
e5c17b8d9d
gnu: Add r-vcd.
...
* gnu/packages/cran.scm (r-vcd): New variable.
2017-11-08 17:34:35 +01:00
018cf270a3
gnu: Add r-laeken.
...
* gnu/packages/cran.scm (r-laeken): New variable.
2017-11-08 17:34:11 +01:00
697e341e74
gnu: fastcap: Use texlive-tiny.
...
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive with
texlive-tiny.
[arguments]: Fix indentation; set HOME in "make-pdf" phase to avoid font
errors with texlive-tiny.
2017-11-08 17:15:24 +01:00
7e3aca2b78
gnu: librecad: Fix build.
...
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase
"patch-boost-error".
2017-11-08 16:21:54 +01:00
b72b42cf02
gnu: Add r-performanceanalytics.
...
* gnu/packages/cran.scm (r-performanceanalytics): New variable.
2017-11-08 16:21:54 +01:00
3699383e6f
gnu: Add r-xts.
...
* gnu/packages/cran.scm (r-xts): New variable.
2017-11-08 16:21:53 +01:00
5a80c15c14
gnu: Remove "open source" from descriptions.
...
All software in Guix is Free Software.
* gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string.
* gnu/packages/firmware.scm (seabios)[description]: Likewise.
* gnu/packages/libupnp.scm (libupnp)[description]: Likewise.
* gnu/packages/maths.scm (cubicle)[description]: Likewise.
* gnu/packages/mingw.scm (mingw-w64)[description]: Likewise.
* gnu/packages/game-development.scm (openmw)[description]: Likewise.
[synopsis]: Remove "Free software".
2017-11-08 16:21:53 +01:00
88fb156288
gnu: pcb: Update to 4.0.2.
...
* gnu/packages/engineering.scm (pcb): Update to 4.0.2.
[arguments]: Add build phase "fix-check-for-display".
2017-11-08 16:21:53 +01:00
c8b38f8ea6
gnu: time: Update license.
...
* gnu/packages/time.scm (time)[license]: Change to gpl3+.
2017-11-08 10:52:09 +02:00
dd00e0919f
gnu: time: Update to 1.8.
...
* gnu/packages/time.scm (time): Update to 1.8.
[arguments]: Remove custom 'configure phase.
2017-11-08 10:49:19 +02:00
12a24ee878
gnu: Add glusterfs.
...
* gnu/packages/file-systems.scm (glusterfs): New variable.
2017-11-07 23:32:46 +01:00
2e648d2bc4
gnu: r-prabclus: Update description.
...
* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
2017-11-07 23:32:46 +01:00
14e5f6b20a
gnu: r-fdrtool: Update description.
...
* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
2017-11-07 23:32:46 +01:00
738dda8330
gnu: Add r-bbmle.
...
* gnu/packages/cran.scm (r-bbmle): New variable.
2017-11-07 23:32:46 +01:00
7b0569c0a9
gnu: Add r-rsofia.
...
* gnu/packages/cran.scm (r-rsofia): New variable.
2017-11-07 23:32:46 +01:00
c49102ecca
gnu: Add r-hitc.
...
* gnu/packages/bioinformatics.scm (r-hitc): New variable.
2017-11-07 23:32:45 +01:00
30eb4e37c8
gnu: Add r-fithic.
...
* gnu/packages/bioinformatics.scm (r-fithic): New variable.
2017-11-07 23:32:45 +01:00
fbf5440637
gnu: Add r-sushi.
...
* gnu/packages/bioinformatics.scm (r-sushi): New variable.
2017-11-07 23:32:45 +01:00
9232cac410
gnu: Add r-vioplot.
...
* gnu/packages/cran.scm (r-vioplot): New variable.
2017-11-07 23:32:45 +01:00
3a22732cd8
gnu: Add r-sm.
...
* gnu/packages/cran.scm (r-sm): New variable.
2017-11-07 23:32:45 +01:00
2e4ce60e7c
gnu: Add r-gwascat.
...
* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
2017-11-07 23:32:44 +01:00
4272000661
gnu: Add r-gviz.
...
* gnu/packages/bioinformatics.scm (r-gviz): New variable.
2017-11-07 23:32:44 +01:00
794ff347a9
gnu: Add r-gqtlstats.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): New variable.
2017-11-07 23:32:44 +01:00
7fd5f60b8f
gnu: Add r-hardyweinberg.
...
* gnu/packages/cran.scm (r-hardyweinberg): New variable.
2017-11-07 23:32:44 +01:00
10e16fa93d
gnu: Add r-mice.
...
* gnu/packages/cran.scm (r-mice): New variable.
2017-11-07 23:32:44 +01:00
66c39102e5
gnu: Add r-ldblock.
...
* gnu/packages/bioinformatics.scm (r-ldblock): New variable.
2017-11-07 23:32:44 +01:00
15f98b0d23
gnu: Add r-erma.
...
* gnu/packages/bioinformatics.scm (r-erma): New variable.
2017-11-07 23:32:43 +01:00
421c68e3f7
gnu: Add r-homo-sapiens.
...
* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable.
2017-11-07 23:32:43 +01:00
b52a866d14
gnu: Add r-org-hs-eg-db.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
2017-11-07 23:32:43 +01:00
dd5fc8b78e
gnu: Add r-snpstats.
...
* gnu/packages/bioinformatics.scm (r-snpstats): New variable.
2017-11-07 23:32:43 +01:00
e2b927993e
gnu: Add r-gqtlbase.
...
* gnu/packages/bioinformatics.scm (r-gqtlbase): New variable.
2017-11-07 23:32:43 +01:00
96a392a0b2
gnu: Add r-gprofiler.
...
* gnu/packages/bioinformatics.scm (r-gprofiler): New variable.
2017-11-07 23:32:42 +01:00
60faf94597
gnu: Add r-ggbio.
...
* gnu/packages/bioinformatics.scm (r-ggbio): New variable.
2017-11-07 23:32:42 +01:00
7af1f40373
gnu: Add r-biovizbase.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): New variable.
2017-11-07 23:32:42 +01:00
2f6f61fd8e
gnu: Add r-organismdbi.
...
* gnu/packages/bioinformatics.scm (r-organismdbi): New variable.
2017-11-07 23:32:42 +01:00
aa30ab5aee
gnu: Add r-ensembldb.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): New variable.
2017-11-07 23:32:42 +01:00
763e98103a
gnu: Add r-annotationfilter.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
2017-11-07 23:32:42 +01:00
04e2a2e969
gnu: Add r-dirichletmultinomial.
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): New variable.
2017-11-07 23:32:41 +01:00
3af149f524
gnu: Add r-complexheatmap.
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): New variable.
2017-11-07 23:32:41 +01:00
902fb15d92
gnu: Add r-genomicfiles.
...
* gnu/packages/bioinformatics.scm (r-genomicfiles): New variable.
2017-11-07 23:32:41 +01:00
cd215877a0
gnu: bdftopcf: Update to 1.1.
...
* gnu/packages/xorg.scm (bdftopcf): Update to 1.1.
[native-inputs]: Change from LIBXFONT to LIBXFONT2.
2017-11-07 23:29:23 +01:00
d469bc09bd
gnu: feh: Update to 2.22.2.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.22.2.
2017-11-07 22:16:27 +01:00
625492ee1a
gnu: gcc-4.7: Resurrect building with gcc-5.4.0.
...
* gnu/packages/patches/gcc-4-compile-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-4.7): Use it.
2017-11-07 22:03:51 +01:00
a67f094671
gnu: Add websockify.
...
* gnu/packages/web.scm (websockify): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:56:42 +01:00
75d342ffa9
gnu: Add python-networkx2.
...
* gnu/packages/python.scm (python-networkx2, python2-networkx2): New variables.
* gnu/local.mk (dist_patch_DATA): Register 'python-networkx2-reproducible-build.patch'.
* gnu/packages/patches/python-networkx2-reproducible-build.patch: New file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:17:20 +01:00
2b295f5a2f
gnu: Add python-pydot.
...
* gnu/packages/graphviz.scm (python-pydot, python2-pydot): New variables.
Modified-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:03:15 +01:00
38ad27da80
gnu: mercurial: Update to 4.4.1.
...
* gnu/packages/version-control.scm (mercurial): Update to 4.4.1.
2017-11-07 20:23:29 +01:00
4a30c1c0e2
gnu: vim: Update to 8.0.1274 [fixes CVE-2017-1000382].
...
* gnu/packages/vim.scm (vim): Update to 8.0.1274.
2017-11-07 20:21:46 +01:00
31a963fe80
gnu: notmuch: Update to 0.25.2.
...
* gnu/packages/mail.scm (notmuch): Update to 0.25.2.
2017-11-07 20:01:03 +01:00
9129804230
gnu: psm: Only use as an input on supported-systems.
...
Syntax help supplied by bavier@member.fsf.org
* gnu/packages/linux.scm (libfabric)[inputs]: Only use psm as an input
on systems where psm is supported.
* gnu/packages/mpi.scm (openmpi)[inputs]: Same.
2017-11-07 20:41:08 +02:00
b516b78002
gnu: psm: Limit supported systems.
...
* gnu/packages/linux.scm (psm)[supported-systems]: New field, limit to
i686-linux and x86_64-linux.
2017-11-07 20:41:05 +02:00
174807b9a4
gnu: gnupg: Update to 2.2.2.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.2.
2017-11-07 19:34:29 +02:00
2f17187ff3
gnu: mediainfo: Change order of custom phases.
...
* gnu/packages/video.scm (mediainfo)[arguments]: Change to the build
directory before executing the autogen script.
2017-11-07 19:34:25 +02:00
6541673354
gnu: linux: Fix kconfig selection.
...
* gnu/packages/linux.scm (make-linux-libre): When cross-compiling,
"kconfig" field is in native-inputs variable. So config is always #f
when cross-compiling linux.
2017-11-07 18:16:02 +01:00
f4433d09a1
gnu: openmpi: Add dependency on PSM.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM.
2017-11-07 18:09:13 +01:00
7bc05ef0ac
gnu: libfabric: Add dependency on PSM.
...
* gnu/packages/linux.scm (libfabric)[inputs]: Add PSM.
2017-11-07 18:09:13 +01:00
fd23d259cd
gnu: Add PSM.
...
* gnu/packages/linux.scm (psm): New variable.
* gnu/packages/patches/psm-arch.patch,
gnu/packages/patches/psm-ldflags.patch,
gnu/packages/patches/psm-repro.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-11-07 18:09:13 +01:00
63b7fbe1bb
gnu: diffoscope: Update to 88.
...
* gnu/packages/package-management.scm (diffoscope): Update to 88.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
db0164b21f
gnu: awesome: Update to 4.2.
...
* gnu/packages/wm.scm (awesome): Update to 4.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
51bc8357e8
gnu: gdm: Add configure flags for better defaults.
...
* gnu/packages/gnome.scm (gdm)[arguments]<#:configure-flags>: Add
--with-initial-vt=7 and --enable-gdm-xsession.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
950d8e5d8c
gnu: gdm: Fix config file path.
...
* gnu/packages/gnome.scm (gdm)[arguments]<#:phases>: Fix the
'pre-configure phase so that GDM finds its config file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
ad54924285
gnu: expect: Change home-page to http://expect.sourceforge.net/ .
...
* gnu/packages/tcl.scm (expect): Change home-page to
http://expect.sourceforge.net/ .
2017-11-07 18:50:46 +03:00
e160aa1f81
gnu: Add r-gage.
...
* gnu/packages/bioinformatics.scm (r-gage): New variable.
2017-11-07 12:39:51 +01:00
3121814ef1
gnu: Add r-keggrest.
...
* gnu/packages/bioinformatics.scm (r-keggrest): New variable.
2017-11-07 12:39:51 +01:00
a9540107c6
gnu: antlr3-3.3: Prettify build phases.
...
* gnu/packages/java.scm (antlr3-3.3)[arguments]: Prettify build phases
"bin-install" and "generate-grammar".
2017-11-07 12:39:50 +01:00
9ecc4c69eb
gnu: r-servr: Update to 0.8.
...
* gnu/packages/web.scm (r-servr): Update to 0.8.
2017-11-07 08:15:45 +01:00
60ec9da3aa
gnu: r-tidyselect: Update to 0.2.3.
...
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
2017-11-07 08:15:44 +01:00
baa00ee90d
gnu: r-msnbase: Update to 2.4.0.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.0.
[propagated-inputs]: Add r-lattice; remove r-reshape2.
2017-11-07 08:15:44 +01:00
39d9098def
gnu: r-mutationalpatterns: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.0.
[propagated-inputs]: Add r-cowplot, r-ggdendro, and r-s4vectors.
2017-11-07 08:15:44 +01:00
14b3c71911
gnu: r-annotationhub: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.0.
[propagated-inputs]: Add r-curl.
2017-11-07 08:15:44 +01:00
15ca195979
gnu: r-mzr: Remove bundled copy of boost.
...
* gnu/packages/bioinformatics.scm (r-mzr)[source]: Remove boost source.
[arguments]: Add build phase "use-system-boost" to link with our boost
package and avoid building the bundled sources.
2017-11-07 08:15:44 +01:00
34b9675449
gnu: r-mzr: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.12.0.
2017-11-07 08:15:43 +01:00
b500dbcdef
gnu: r-mzid: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.16.0.
2017-11-07 08:15:43 +01:00
eeaa6967f9
gnu: r-chipseq: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.28.0.
[propagated-inputs]: Add r-lattice.
2017-11-07 08:15:43 +01:00
158b6743dc
gnu: r-genomicfeatures: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.30.0.
[propagated-inputs]: Add r-rmysql.
2017-11-07 08:15:43 +01:00
74248d22a0
gnu: Add r-rmysql.
...
* gnu/packages/databases.scm (r-rmysql): New variable.
2017-11-07 08:15:43 +01:00
4dd469ef6d
gnu: r-rtracklayer: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.0.
[arguments]: Adjust patch to use system zlib.
2017-11-07 08:15:42 +01:00
a044c7f4c4
gnu: r-biocparallel: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.12.0.
[propagated-inputs]: Add r-bh.
2017-11-07 08:15:42 +01:00
42e11d3301
gnu: r-biomart: Update to 2.34.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.0.
[propagated-inputs]: Add r-progress and r-stringr.
2017-11-07 08:15:42 +01:00
010ab2ffd2
gnu: r-edger: Update to 3.20.1.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.1.
[propagated-inputs]: Add r-rcpp.
2017-11-07 08:15:42 +01:00
eb3f5cc76a
gnu: r-gostats: Update to 2.44.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.44.0.
[propagated-inputs]: Add r-rgraphviz.
2017-11-07 08:15:41 +01:00
2404cc4283
gnu: r-category: Update to 2.44.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.44.0.
[propagated-inputs]: Remove r-rsqlite; add r-dbi.
2017-11-07 08:15:41 +01:00
65a8cd6676
gnu: r-lubridate: Update to 1.7.1.
...
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.1.
[propagated-inputs]: Add r-rcpp.
2017-11-07 08:15:41 +01:00
689edf1153
gnu: r-preprocesscore: Update to 1.40.0.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.40.0.
2017-11-07 08:15:41 +01:00
e7f680f071
gnu: r-r-utils: Update to 2.6.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.6.0.
2017-11-07 08:15:41 +01:00
ecfe98a17a
gnu: r-openssl: Update to 0.9.8.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.8.
2017-11-07 08:15:40 +01:00
aced057fbc
gnu: r-rlang: Update to 0.1.4.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.4.
2017-11-07 08:15:40 +01:00
1be0f53664
gnu: r-vsn: Update to 3.46.0.
...
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.46.0.
[propagated-inputs]: Remove r-hexbin.
2017-11-07 08:15:40 +01:00
007424b5a5
gnu: r-motifrg: Rename input label.
...
* gnu/packages/bioinformatics.scm (r-motifrg)[propagated-inputs]:
Rename label of r-bsgenome-hsapiens-ucsc-hg19.
2017-11-07 08:15:40 +01:00
ce59d62519
gnu: r-motifrg: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.22.0.
2017-11-07 08:15:40 +01:00
98791c25c8
gnu: r-qvalue: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.10.0.
2017-11-07 08:15:39 +01:00
87fa5aface
gnu: r-fastseq: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-fastseq): Update to 1.24.0.
2017-11-07 08:15:39 +01:00
1567c8d91b
gnu: r-interactivedisplaybase: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to
1.16.0.
2017-11-07 08:15:39 +01:00
0096127974
gnu: r-edaseq: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.12.0.
2017-11-07 08:15:39 +01:00
22752bef3b
gnu: r-msnid: Update to 1.11.0.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.11.0.
2017-11-07 08:15:38 +01:00
8140f680ad
gnu: r-deseq: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.30.0.
2017-11-07 08:15:38 +01:00
531e80903f
gnu: r-aroma-light: Update to 3.8.0.
...
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.8.0.
2017-11-07 08:15:38 +01:00
a998c9a464
gnu: r-pcamethods: Update to 1.70.0.
...
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.70.0.
2017-11-07 08:15:38 +01:00
8a8138d248
gnu: r-affyio: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.48.0.
2017-11-07 08:15:38 +01:00
dad5f83817
gnu: r-affy: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.56.0.
2017-11-07 08:15:37 +01:00
9a665dfb6f
gnu: r-protgenerics: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.10.0.
2017-11-07 08:15:37 +01:00
617700895b
gnu: r-seqlogo: Update to 1.44.0.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.44.0.
2017-11-07 08:15:37 +01:00
e127c918f8
gnu: r-genomation: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.10.0.
[propagated-inputs]: Remove r-rhtslib.
[inputs]: Remove zlib.
2017-11-07 08:15:37 +01:00
e6ce4bf00d
gnu: r-impute: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.52.0.
2017-11-07 08:15:37 +01:00
0f948b116b
gnu: r-seqpattern: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.10.0.
2017-11-07 08:15:36 +01:00
e67850b40d
gnu: r-bsgenome: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.46.0.
2017-11-07 08:15:36 +01:00
d13a3fea7e
gnu: r-topgo: Update to 2.30.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.0.
2017-11-07 08:15:36 +01:00
aeb73879f6
gnu: r-graph: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.56.0.
2017-11-07 08:15:36 +01:00
96fb465174
gnu: r-genomicalignments: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.0.
2017-11-07 08:15:35 +01:00
6fcbed7329
gnu: r-summarizedexperiment: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.8.0.
2017-11-07 08:15:35 +01:00
cb0a9a7493
gnu: r-delayedarray: Update to 0.4.1.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.4.1.
2017-11-07 08:15:35 +01:00
f8068419a6
gnu: r-rsamtools: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.30.0.
2017-11-07 08:15:35 +01:00
b719435ebb
gnu: r-biostrings: Update to 2.46.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.46.0.
2017-11-07 08:15:35 +01:00
0f8d98f294
gnu: r-annotationdbi: Update to 1.40.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.40.0.
2017-11-07 08:15:34 +01:00
ca52123611
gnu: r-biobase: Update to 2.38.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.38.0.
2017-11-07 08:15:34 +01:00
aa5c1f61f1
gnu: r-genomicranges: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.0.
2017-11-07 08:15:34 +01:00
2b6ae8bfd5
gnu: r-xvector: Update to 0.18.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.18.0.
2017-11-07 08:15:34 +01:00
f642c0e4c7
gnu: r-limma: Update to 3.34.0.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.0.
2017-11-07 08:15:33 +01:00
7f1bac3528
gnu: r-variantannotation: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.0.
2017-11-07 08:15:33 +01:00
8aab0235e0
gnu: r-genomeinfodb: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.14.0.
2017-11-07 08:15:33 +01:00
9e482c2069
gnu: r-iranges: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.12.0.
2017-11-07 08:15:33 +01:00
41f0f94976
gnu: r-s4vectors: Update to 0.16.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.16.0.
2017-11-07 08:15:33 +01:00
2167eafc1d
gnu: r-biocstyle: Update to 2.6.0.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.0.
2017-11-07 08:15:32 +01:00
3241461670
gnu: r-biocinstaller: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.28.0.
2017-11-07 08:15:32 +01:00
d61fc4e104
gnu: r-biocgenerics: Update to 0.24.0.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.24.0.
2017-11-07 08:15:32 +01:00
704fe4d115
gnu: r-grohmm: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.12.0.
2017-11-07 08:15:32 +01:00
843826e262
gnu: r-shortread: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.0.
2017-11-07 08:15:31 +01:00
b53755258a
gnu: r-systempiper: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.12.0.
2017-11-07 08:15:31 +01:00
9f52e53d5d
gnu: r-gseabase: Update to 1.40.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.0.
2017-11-07 08:15:31 +01:00
fad7c0c7bd
gnu: r-sva: Update to 3.26.0.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.26.0.
2017-11-07 08:15:31 +01:00
91e1867972
gnu: r-methylkit: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.4.0.
2017-11-07 08:15:31 +01:00
c126ba69db
gnu: r-copywriter: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.10.0.
2017-11-07 08:15:30 +01:00
598dacf657
gnu: r-annotationfilter: Update to 1.2.0.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.2.0.
2017-11-07 08:15:30 +01:00
e6b332d43b
gnu: r-rhdf5: Update to 2.22.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.22.0.
2017-11-07 08:15:30 +01:00
19e8929cbd
gnu: r-tximport: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.6.0.
2017-11-07 08:15:30 +01:00
da153b7f94
gnu: r-bamsignals: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.10.0.
2017-11-07 08:15:30 +01:00
5c18470008
gnu: r-zlibbioc: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.24.0.
2017-11-07 08:15:29 +01:00
1d0263b44e
gnu: r-rhtslib: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.10.0.
2017-11-07 08:15:29 +01:00
c25154e5cb
gnu: r-rbgl: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.54.0.
2017-11-07 08:15:29 +01:00
727706ad38
gnu: r-annotationforge: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.20.0.
2017-11-07 08:15:29 +01:00
3fd010ff30
gnu: r-dexseq: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.0.
2017-11-07 08:15:28 +01:00
0166dc07ef
gnu: r-deseq2: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.0.
2017-11-07 08:15:28 +01:00
554fac74aa
gnu: r-genefilter: Update to 1.60.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.60.0.
2017-11-07 08:15:28 +01:00
cb4d3ff2c4
gnu: r-geneplotter: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.56.0.
2017-11-07 08:15:28 +01:00
2d4e887dc0
gnu: r-annotate: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.0.
2017-11-07 08:15:28 +01:00
94fd86e5e1
gnu: r-dnacopy: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.52.0.
2017-11-07 08:15:27 +01:00
c7782c3f1f
gnu: r-biocviews: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.46.0.
[propagated-inputs]: Remove r-knitr.
2017-11-07 08:15:27 +01:00
7373b4167a
gnu: r-bioccheck: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.14.0.
[native-inputs]: Remove which.
[propagated-inputs]: Add r-stringdist.
2017-11-07 08:15:27 +01:00
a40a04fdbb
gnu: Add r-stringdist.
...
* gnu/packages/cran.scm (r-stringdist): New variable.
2017-11-07 08:15:27 +01:00
8ca2b2b06e
gnu: r-rgraphviz: Update to 2.22.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.22.0.
2017-11-07 08:15:27 +01:00
a0e4b41b40
gnu: guile-git: Update snapshot.
...
* gnu/packages/guile.scm (guile-git): Update to commit 951a32c.
2017-11-07 00:12:11 +01:00
fedde43b6d
gnu: moka-icon-theme: Fix license.
...
* gnu/packages/gnome.scm (moka-icon-theme): Add cc-by-sa4.0 to license field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
550281fb5f
gnu: moka-icon-theme: Add faba-icon-theme as propagated input.
...
* gnu/packages/gnome.scm (moka-icon-theme)[propagated-inputs]: New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
8b0e4177ee
gnu: moka-icon-theme: Simplify package definition.
...
* gnu/packages/gnome.scm (moka-icon-theme): Inherit faba-icon-theme to avoid
duplicating similar package definition.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
d935e6a12c
gnu: Add faba-icon-theme.
...
* gnu/packages/gnome.scm (faba-icon-theme): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
47bd32d98e
gnu: electrum: Update to 3.0.
...
gnu/packages/finance.scm (electrum): Update to 3.0.
[inputs]: Change to python3 inputs.
[arguments]: Remove python-2. Disable tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:10 +01:00
ea0421bbf6
gnu: Add python-jsonrpclib-pelix.
...
* gnu/packages/python.scm (python-jsonrpclib-pelix, python2-jsonrpclib-pelix):
New variables.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:10 +01:00
0ad5f80982
Fix ambiguous imports.
...
* gnu/packages/ocaml.scm: Hide 'zip' from (srfi srfi-1).
* guix/git.scm: Select 'mkdir-p' from (guix build utils).
2017-11-07 00:12:10 +01:00
913027f383
gnu: nnn: Update to 1.5.
...
* gnu/packages/admin.scm (nnn): Update to 1.5.
2017-11-06 23:07:19 +02:00
6a534909fa
gnu: libuninameslist: Update to 20170807.
...
* gnu/packages/fontutils.scm (libuninameslist): Update to 20170807.
2017-11-06 23:07:13 +02:00
10b159a303
gnu: u-boot: Only install 'MLO' output if it exists.
...
* gnu/packages/bootloaders.scm (u-boot)[arguments]: Add 'MLO' to
uboot-files only if it has been built.
2017-11-06 22:54:28 +02:00
dd208b936c
bootloaders: uboot: Add .img and MLO files to binary outputs.
...
* gnu/packages/bootloaders.scm (make-u-boot-package): Add .img and MLO files
as binary output.
2017-11-06 19:58:21 +01:00
f6948189a9
linux: Add omap2plus generic kernel.
...
* gnu/packages/linux.scm (linux-libre-arm-omap2plus): New exported variable.
2017-11-06 19:55:10 +01:00
2ac42fe51f
gnu: uboot: Fix same-arch? check.
...
* gnu/packages/bootloaders.scm (make-u-boot-package): Compare %current-system
to system associated to given triplet. Comparing a system and a triplet
didn't make sense.
2017-11-06 19:53:13 +01:00
d298e7652a
gnu: perl-test-www-mechanize-psgi: Update source uri.
...
* gnu/packages/web.scm (perl-test-www-mechanize-psgi)[source]: Update to
new source uri.
2017-11-06 20:39:45 +02:00
12c613b548
gnu: dtc: Build python bindings.
...
* gnu/packages/bootloaders.scm (dtc)[native-inputs]: Add swig.
[inputs]: Add python-2.
[arguments]: Remove 'NO_PYTHON' from make-flags, add 'SETUP_PREFIX' to
set python bindings prefix.
2017-11-06 20:39:45 +02:00
ab8757c5b1
gnu: dtc: Update to 1.4.5.
...
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.5.
[arguments]: Add NO_PYTHON flag to make-flags.
2017-11-06 20:39:45 +02:00
9371600ec8
gnu: libxres: Update to 1.2.0.
...
* gnu/packages/xorg.scm (libxres): Update to 1.2.0.
2017-11-06 20:02:45 +02:00
fd592a12e2
gnu: youtube-dl: Update to 2017.11.06.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.11.06.
2017-11-06 18:18:41 +01:00
8f4e3b95df
gnu: aria2: Update to 1.33.0.
...
* gnu/packages/bittorrent.scm (aria2): Update to 1.33.0.
2017-11-06 06:18:31 +02:00
08e1f38ddd
gnu: emacs-undo-tree: Parameterize source uri.
...
* gnu/packages/emacs.scm (emacs-undo-tree)[source]: Replace hard-coded
version with version parameter.
2017-11-06 06:18:26 +02:00
73cd4022d6
gnu: borg: Update to 1.1.2.
...
* gnu/packages/backup.scm (borg): Update to 1.1.2.
[arguments]: Disable another test in the 'check' phase.
2017-11-05 20:36:05 -05:00
d8799bd0df
gnu: netsurf: Update to 3.7.
...
For compatibility, dependents must be updated at the same time.
* gnu/packages/web.scm (libcss): Update to 0.7.0
(nsgenbind): Update to 0.5.
(netsurf): Update to 3.7.
[arguments]: Fix binary name in .desktop. Adjust "docs" directory name.
* gnu/packages/patches/netsurf-system-utf8proc.patch: Adjust to new source.
2017-11-05 07:46:08 -06:00
772588bd22
gnu: libnspsl: Update to 0.1.2.
...
* gnu/packages/web.scm (libnspsl): Update to 0.1.2.
2017-11-05 07:46:08 -06:00
f379c52f27
gnu: libnsgif: Update to 0.2.0.
...
* gnu/packages/web.scm (libnsgif): Update to 0.2.0.
2017-11-05 07:46:08 -06:00
b20d97f848
gnu: libsvgtiny: Update to 0.1.6.
...
* gnu/packages/web.scm (libsvgtiny): Update to 0.1.6.
2017-11-05 07:46:08 -06:00
036f47a37e
gnu: libdom: Update to 0.3.2.
...
* gnu/packages/web.scm (libdom): Update to 0.3.2.
2017-11-05 07:46:08 -06:00
e33f6efd60
gnu: libwapcaplet: Update to 0.4.0.
...
* gnu/packages/web.scm (libwapcaplet): Update to 0.4.0.
2017-11-05 07:46:08 -06:00
84dec7a0c0
gnu: hubbub: Update to 0.3.4.
...
* gnu/packages/web.scm (hubbub): Update to 0.3.4.
2017-11-05 07:46:07 -06:00
bf56082605
gnu: netsurf-buildsystem: Update to 1.6.
...
* gnu/packages/web.scm (netsurf-buildsystem): Update to 1.6.
2017-11-05 07:46:00 -06:00
511d8a02e8
gnu: emacs-evil: Update to 1.2.13.
...
* gnu/packages/emacs.scm (emacs-evil): Update to 1.2.13.
(source): Adjust URL to new upstream location on github.
(home-page): likewise.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:47 +01:00
db574f7183
gnu: emacs-slime: Use correct Texinfo commands in the description.
...
Previously the description had "@{something}" in it which is never
valid Texinfo. This commit changes it to use "@command{something}"
to render the full description.
* gnu/packages/emacs.scm (emacs-slime)[description]: Correct Texinfo usage.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:33 +01:00
77a7891b87
gnu: emacs-undo-tree: Update to 0.6.6.
...
* gnu/packages/emacs (emacs-undo-tree): Update to 0.6.6.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:20 +01:00
5fa1b4174a
gnu: emacs-which-key: Update to 3.0.2.
...
* gnu/packages/emacs.scm (emacs-which-key): Update to 3.0.2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:22:31 +01:00
9505877205
gnu: emacs-neotree: Update to 0.5.2.
...
* gnu/packages/emacs.scm (emacs-neotree): Update to 0.5.2.
[source](uri): Adjust URL to tag change.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:22:14 +01:00
aa70cf8c36
gnu: redis: Update to 4.0.2.
...
* gnu/packages/databases.scm (redis): Update to 4.0.2.
2017-11-05 19:03:32 +01:00
39f2433c39
gnu: sdl2: Update to 2.0.7 and enable Wayland backend.
...
* gnu/packages/sdl.scm (sdl2): Update to 2.0.7.
[inputs]: Add wayland, wayland-protocols, libxkbcommon.
[arguments]: Add '--disable-wayland-shared' to #:configure-flags.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 18:14:19 +01:00
7c5cc40097
gnu: add disorderfs.
...
* gnu/packages/file-systems.scm (disorderfs): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:50:48 +01:00
e55c46b850
gnu: python-decorator: Update to 4.1.2.
...
* gnu/packages/python.scm (python-decorator): Update to 4.1.2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:27:42 +01:00
743d3f6502
gnu: calibre: Install mimetypes.
...
* gnu/packages/ebook.scm (calibre)[arguments]: Install mimetypes xml file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
9132212fb8
gnu: calibre: Add optipng as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add optipng.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
bf4a40db3c
gnu: calibre: Add python2-dukpy as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-dukpy. dukpy was
unbundled from Calibre, so we need to to use the Guix version.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
2e15906c1c
gnu: Add python-dukpy, python2-dukpy.
...
gnu/packages/python.scm (python-dukpy, python2-dukpy): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
7ed93a6c9e
gnu: calibre: Update to 3.11.1.
...
* gnu/packages/ebook.scm (calibre): Update to 3.11.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
540dd1c8cc
gnu: retroarch: Enable Wayland support.
...
* gnu/packages/games.scm (retroarch)[inputs]: Add wayland.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
ca1ddce8a3
gnu: weston: Update to 3.0.0.
...
* gnu/packages/freedesktop.scm (weston): Update to 3.0.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
8d2bde86ec
gnu: lollypop: Update to 0.9.304.
...
* gnu/packages/gnome.scm (lollypop): Update to 0.9.304.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
08d61397cd
gnu: gnome-terminal: Update to 3.26.2.
...
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.26.2.
2017-11-05 16:44:51 +01:00
68488f275d
gnu: vte: Update to 0.50.2.
...
* gnu/packages/gnome.scm (vte): Update to 0.50.2.
2017-11-05 16:44:50 +01:00
7561be8699
gnu: fio: Update to 3.2.
...
* gnu/packages/benchmark.scm (fio): Update to 3.2.
2017-11-05 16:16:51 +01:00
3c41b9929b
gnu: feh: Update to 2.22.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.22.
[native-search-paths]: New field.
2017-11-05 16:08:02 +01:00
50c229caf9
gnu: fio: Update to 3.1.
...
* gnu/packages/benchmark.scm (fio): Update to 3.1.
2017-11-05 12:29:46 +02:00
1289001a5d
gnu: prison: Move to be in alphabetical order.
...
I was trapped be the definitions not being in alphabetical order.
* gnu/packages/kde-frameworks.scm (prison): Move in front of
solid.
2017-11-05 10:56:40 +01:00
a7dc855725
gnu: kdewebkit: Move to be in alphabetical order.
...
I was trapped by the definitions not being in alphabetical order.
* gnu/packages/kde-frameworks.scm (kdewebkit): Move in front of
kemoticons.
2017-11-05 10:56:40 +01:00
39d1a429fe
gnu: kactivities: Move to tier 2.
...
KDE now lists this package as tier 2, I was trapped by the
definitions being at the wrong place.
* gnu/packages/kde-frameworks.scm (kactivities): Move into the
"section" of tier 2 packages. (kactivities-stats) Remove now
obsolete comment.
2017-11-05 10:56:39 +01:00
571f1fa3b2
gnu: libksysguard: Update to 5.11.2.
...
* gnu/packages/kde.scm (libksysguard): Update to 5.11.2.
2017-11-05 10:56:39 +01:00
e8737735a2
gnu: solid: Enable building interface for qml.
...
* gnu/package/kde-frameworks.scm(solid)[inputs]: Add qtdeclarative.
2017-11-05 10:56:38 +01:00
b1beb1670b
gnu: krunner: Make some tests pass.
...
* gnu/packages/kde-frameworks.scm[arguments]
<#:tests?>: Remove.
<#:phases>[fix-paths-for-test'] New phase.
<#:phases>[check-setup]: Set $HOME. Blacklist a failing new-in-5.39.0 test.
2017-11-05 10:56:37 +01:00
5bc1efd77d
gnu: kdelibs4support: Make test kstandarddirstest pass.
...
* gnu/package/kde-frameworks.scm(kdelibs4support)[#:phases]
<check-post-install>: Add workaround for bug in test-case.
Update comment.
2017-11-05 10:56:36 +01:00
fa274ab2c0
gnu: kimageformats: Update comment.
...
* gnu/packages/kde-frameworks.scm(kimageformats): Update comment.
2017-11-05 10:56:36 +01:00
6211aadf4b
gnu: kde-frameworks: Update to 5.39.0.
...
Beside simple updating:
- ktexteditor: Add input.
- kdelibs4support: Enable test kmimetypetest, disable test kuniqueapptest.
- kimageformats: Make the plugins available for tests.
- krunner: Make old tests pass again. Blacklist a failing new test.
* gnu/packages/kde-frameworks.scm (attica, baloo, bluez-qt, breeze-icons,
extra-cmake-modules, kactivities, kactivities-stats, kapidox, karchive,
kauth, kbookmarks, kcmutils, kcodecs, kcompletion, kconfig, kconfigwidgets,
kcoreaddons, kcrash, kdbusaddons, kdeclarative, kded,
kde-frameworkintegration, kdelibs4support, kdesignerplugin, kdesu,
kdewebkit, kdnssd, kdoctools, kemoticons, kfilemetadata, kglobalaccel,
kguiaddons, khtml, ki18n, kiconthemes, kidletime, kimageformats, kinit, kio,
kitemmodels, kitemviews, kjobwidgets, kjs, kjsembed, kmediaplayer,
knewstuff, knotifications, knotifyconfig, kpackage, kparts, kpeople,
kplotting, kpty, kross, krunner, kservice, ksyntaxhighlighting,
ktextwidgets, kunitconversion, kwallet, kwayland, kwidgetsaddons,
kwindowsystem, kxmlgui, kxmlrpcclient, modemmanager-qt, networkmanager-qt,
oxygen-icons, plasma-framework, prison, solid, sonnet, threadweaver): Update
to 5.39.0
(ktexteditor) Update to 5.39.0. [source]: Add patch. [inputs]: Add
qtdeclarative.
(kdelibs4support): Update to 5.39.0. [#:phase check-post-install]: Remove
kmimetypetest from and add kuniqueapptest to list of test to be excluded
when running ctest.
(kimageformats): Update to 5.39.0. [#:phase check-setup] Make the plugins
available for tests.
* gnu/packages/patches/ktexteditor-5.39.0-autotests-dependencies.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-11-05 10:56:35 +01:00
9f5bd38f94
gnu: extra-cmake-modules: Install pri-files into lib/qt5/.
...
This in accordance with the documentation in
ECMGeneratePriFile.cmake: "Packagers … want to set
`ECM_MKSPECS_INSTALL_DIR` to something like
`share/qt5/mkspecs/modules`." Our Qt5 is putting pri-files into
`lib/qt5/mkspecs/modules`.
* gnu/packages/kde-frameworks.scm(extra-cmake-modules)[#:phase fix-lib-path]:
New substitute for file 'modules/ECMGeneratePriFile.cmake'.
2017-11-05 10:56:34 +01:00
46dea1241c
gnu: icedtea: Update to 3.6.0 [security fixes].
...
Fixes CVE-2017-{10274,10821,10825,10295,10388,10346,10350,10347,10349,10345,
10348,10357,10355,10356,10165} and CVE-2016-{10165,9840,9841,9842,9843}.
* gnu/packages/java.scm (icedtea-8): Update to 3.6.0.
[native-inputs]: Update dependency hashes.
2017-11-04 15:33:59 +01:00
171ba2480f
gnu: diamond: Update to 0.9.12.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.12.
2017-11-04 10:51:44 +10:00
d3f140218b
gnu: sssd: Disable failing test.
...
* gnu/packages/sssd.scm (sssd)[arguments]<#:phases>: Add substitution to
'disable-failing-test' phase.
2017-11-04 00:07:40 +01:00
f1ae27b608
gnu: samba: Update to 4.7.1.
...
* gnu/packages/samba.scm (samba): Update to 4.7.1.
2017-11-04 00:07:40 +01:00
ad25310dd5
gnu: ldb: Update to 1.3.0.
...
* gnu/packages/samba.scm (ldb): Update to 1.3.0.
2017-11-04 00:07:40 +01:00
d94c679254
gnu: re2: Update to 2017-11-01.
...
* gnu/packages/regex.scm (re2): Update to 2017-11-01.
2017-11-04 00:07:39 +01:00
1695bd788d
gnu: libxfont@1: Update to 1.5.3.
...
* gnu/packages/xorg.scm (libxfont): Update to 1.5.3.
[source](patches): Remove.
2017-11-04 00:07:39 +01:00
66865ab8ac
gnu: multiqc: Update to 1.3.
...
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.3.
[propagated-inputs]: Add python-enum34.
[license]: The license was changed to "GPLv3 or later" with this release.
2017-11-03 17:18:52 +01:00
416ad6feaa
gnu: iso-codes: Update to 3.76.
...
* gnu/packages/iso-codes.scm (iso-codes): Update to 3.76.
2017-11-03 09:34:13 -04:00
b12c6a664d
gnu: r-ape: Update to 5.0.
...
* gnu/packages/bioinformatics.scm (r-ape): Update to 5.0.
[propagated-inputs]: Add r-rcpp.
2017-11-03 14:14:38 +01:00
840782204f
gnu: r-bbmle: Update to 1.0.20.
...
* gnu/packages/cran.scm (r-bbmle): Update to 1.0.20.
2017-11-03 14:14:38 +01:00
1a1b4f0571
gnu: r-proxy: Update to 0.4-19.
...
* gnu/packages/cran.scm (r-proxy): Update to 0.4-19.
2017-11-03 14:14:38 +01:00
a8a2871f71
gnu: r-glue: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-glue): Update to 1.2.0.
2017-11-03 14:14:38 +01:00
a6ec5b7043
gnu: r-withr: Update to 2.1.0.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.1.0.
[propagated-inputs]: Add r-lattice.
2017-11-03 14:14:37 +01:00
fd9afcf4ea
gnu: r-quantreg: Update to 5.34.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
2017-11-03 14:14:37 +01:00
1fe75660c0
gnu: r-robustbase: Update to 0.92-8.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
2017-11-03 14:14:37 +01:00
1fb415cb50
gnu: r-purrr: Update to 0.2.4.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
2017-11-03 14:14:37 +01:00
c8818f5577
gnu: r-irlba: Update to 2.3.1.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
2017-11-03 14:14:37 +01:00
116e9837b5
gnu: r-checkmate: Update to 1.8.5.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
2017-11-03 14:14:36 +01:00
fde66e3018
gnu: r-multitaper: Update to 1.0-14.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.
2017-11-03 14:14:36 +01:00
0a123e0609
gnu: r-data-table: Update to 1.10.4-3.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-3.
2017-11-03 14:14:36 +01:00
b5a2f37157
gnu: r-pryr: Update to 0.1.3
...
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.3.
2017-11-03 14:14:36 +01:00
bc409c8d3b
gnu: r-lazyeval: Update to 0.2.1.
...
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.1.
2017-11-03 14:14:36 +01:00
6b968c4cd3
gnu: Add r-corrplot.
...
* gnu/packages/cran.scm (r-corrplot): New variable.
2017-11-03 10:34:24 +01:00
81e0b62502
gnu: Add r-ggrepel.
...
* gnu/packages/cran.scm (r-ggrepel): New variable.
2017-11-03 10:34:23 +01:00
0f3142e7c3
gnu: linux-libre: Update to 4.13.11.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.11.
(%linux-libre-hash): Update hash.
2017-11-03 01:31:06 -04:00
336b8d422d
gnu: linux-libre@4.9: Update to 4.9.60.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.60.
2017-11-03 01:30:25 -04:00
15d44dfe22
gnu: linux-libre@4.4: Update to 4.4.96.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.96.
2017-11-03 01:29:33 -04:00
72df48dbad
gnu: Add kodi-cli.
...
* gnu/packages/kodi.scm (kodi-cli): New variable.
2017-11-03 06:46:03 +03:00
1d84500a72
gnu: conda: Fix environment scripts.
...
* gnu/packages/package-management.scm (conda)[arguments]: Add phase
"undo-wrap".
2017-11-03 00:12:46 +01:00
ada53b1d50
Revert "gnu: itstool: Update to 2.0.4."
...
This reverts commit 13fbd174b5
2017-11-02 23:00:23 +01:00
77576be41f
gnu: openssl@1.1: Update to 1.1.0g [fixes CVE-2017-3735, CVE-2017-2736].
...
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0g.
[source]: Add HTTPS mirror.
2017-11-02 22:21:59 +01:00
1df4f5c919
gnu: openssl@1.0: Replace with 1.0.2m [fixes CVE-2017-3735, CVE-2017-2736].
...
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2m): New public variable.
2017-11-02 22:21:59 +01:00
22bf67d1f4
gnu: enlightenment: Update to 0.22.0.
...
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.0.
2017-11-02 23:05:11 +02:00
41b5408235
gnu: efl: Update to 1.20.5.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.20.5.
2017-11-02 23:05:09 +02:00
bc183968f5
gnu: vte-ng: Update to 0.50.2.a.
...
* gnu/packages/gnome.scm (vte-ng): Update to 0.50.2.a.
2017-11-02 21:17:41 +01:00
52995941bc
gnu: gnome-todo: Update to 3.26.2.
...
* gnu/packages/gnome.scm (gnome-todo): Update to 3.26.2.
2017-11-02 21:10:21 +01:00
92c9392767
gnu: dconf-editor: Update to 3.26.2.
...
* gnu/packages/gnome.scm (dconf-editor): Update to 3.26.2.
2017-11-02 21:10:21 +01:00
b39e612115
gnu: gnome-clocks: Update to 3.26.1.
...
* gnu/packages/gnome.scm (gnome-clocks): Update to 3.26.1.
2017-11-02 21:10:20 +01:00
1b59d45ee4
gnu: file-roller: Update to 3.26.2.
...
gnu/packages/gnome.scm (file-roller): Update to 3.26.2.
2017-11-02 21:10:20 +01:00
46994d0d4c
gnu: aisleriot: Update to 3.22.4.
...
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.4.
2017-11-02 21:10:19 +01:00
03e775d4e8
gnu: knot: Update to 2.6.1.
...
* gnu/packages/dns.scm (knot): Update to 2.6.1.
2017-11-02 21:10:18 +01:00
73b80ff924
gnu: miniupnpc: Update to 2.0.20171102.
...
* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20171102.
2017-11-02 21:10:18 +01:00
3440f12a7e
gnu: mpv: enable Wayland support.
...
* gnu/packages/video.scm (mpv)[inputs]: Add wayland and libxkbcommon.
2017-11-02 16:03:25 -04:00
13fbd174b5
gnu: itstool: Update to 2.0.4.
...
* gnu/packages/glib.scm (itstool): Update to 2.0.4.
[inputs]: Replace python and python-libxml2 with python-2 and python2-libxml2.
2017-11-02 15:37:22 -04:00
67bd376b1a
gnu: gnome-maps: Update to 3.26.2.
...
* gnu/packages/geo.scm (gnome-maps): Update to 3.26.2.
[arguments]: In 'install' phase, add webkitgtk to LD_LIBRARY_PATH.
2017-11-02 14:42:58 -04:00
4dd137d508
gnu: libgweather: Update to 3.26.0.
...
* gnu/packages/gnome.scm (libgweather): Update to 3.26.0.
2017-11-02 12:05:03 -04:00
bb27eb0dbf
gnu: Add java-plexus-classworlds.
...
* gnu/packages/java.scm (java-plexus-classworlds): New variable.
2017-11-02 13:07:38 +01:00
4d50897515
gnu: Add java-powermock-api-easymock.
...
* gnu/packages/java.scm (java-powermock-api-easymock): New variable.
2017-11-02 13:07:30 +01:00
33db168181
gnu: Add java-powermock-modules-junit4.
...
* gnu/packages/java.scm (java-powermock-modules-junit4): New variable.
2017-11-02 13:07:27 +01:00
6c21d46c70
gnu: Add java-powermock-modules-junit4-common.
...
* gnu/packages/java.scm (java-powermock-modules-junit4-common): New
variable.
2017-11-02 13:07:24 +01:00
2d5d65d7dd
gnu: Add java-powermock-api-support.
...
* gnu/packages/java.scm (java-powermock-api-support): New variable.
2017-11-02 13:07:22 +01:00
d4a4d5da60
gnu: Add java-powermock-core.
...
* gnu/packages/java.scm (java-powermock-core): New variable.
2017-11-02 13:07:19 +01:00
8d6a48150a
gnu: Add java-powermock-reflect.
...
* gnu/packages/java.scm (java-powermock-reflect): New variable.
* gnu/packages/patches/java-powermock-fix-java-files.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-11-02 13:07:17 +01:00
5619556b24
gnu: Add java-xerial-core.
...
* gnu/packages/java.scm (java-xerial-core): New variable.
2017-11-02 13:07:15 +01:00
a53d9ac0f2
gnu: Add java-lmax-disruptor.
...
* gnu/packages/java.scm (java-lmax-disruptor): New variable.
2017-11-02 13:07:12 +01:00
3120836732
gnu: Add java-bouncycastle-bcpkix.
...
* gnu/packages/java.scm (java-bouncycastle-bcpkix): New variable.
2017-11-02 13:07:09 +01:00
62315865df
gnu: Add java-bouncycastle-bcprov.
...
* gnu/packages/java.scm (java-bouncycastle-bcprov): New variable.
2017-11-02 13:07:07 +01:00
d54d7d31ac
gnu: Add java-lz4.
...
* gnu/packages/java.scm (java-lz4): New variable.
2017-11-02 13:07:04 +01:00
eaf3cb7a41
gnu: Add java-mvel2.
...
* gnu/packages/java.scm (java-mvel2): New variable.
2017-11-02 13:07:01 +01:00
1717a7de7b
gnu: Add java-jnacl.
...
* gnu/packages/java.scm (java-jnacl): New variable.
2017-11-02 13:06:59 +01:00
0442d897e9
gnu: Add java-testng.
...
* gnu/packages/java.scm (java-testng): New variable.
2017-11-02 13:06:56 +01:00
ca98e4481f
gnu: Add java-fest-assert.
...
* gnu/packages/java.scm (java-fest-assert): New variable.
2017-11-02 13:06:54 +01:00
3c6c835806
gnu: Add java-fest-test.
...
* gnu/packages/java.scm (java-fest-test): New variable.
2017-11-02 13:06:51 +01:00
7a343e971a
gnu: Add java-fest-util.
...
* gnu/packages/java.scm (java-fest-util): New variable.
2017-11-02 13:06:48 +01:00
e84b899d50
gnu: Add java-jmock-legacy.
...
* gnu/packages/java.scm (java-jmock-legacy): New variable.
2017-11-02 13:06:46 +01:00
25436c6d03
gnu: Add java-jmock-junit4.
...
* gnu/packages/java.scm (java-jmock-junit4): New variable.
2017-11-02 13:06:43 +01:00
045124ae2f
gnu: Add java-jmock.
...
* gnu/packages/java.scm (java-jmock): New variable.
2017-11-02 13:06:41 +01:00
11bc385b7b
gnu: Add java-bsh.
...
* gnu/packages/java.scm (java-bsh): New variable.
2017-11-02 13:06:38 +01:00
a6dd06d0e2
gnu: Add java-jcommander.
...
* gnu/packages/java.scm (java-jcommander): New variable.
2017-11-02 13:06:19 +01:00
2524a2a17a
gnu: five-or-more: Update to 3.26.0.
...
* gnu/packages/gnome.scm (five-or-more): Update to 3.26.0.
2017-11-02 07:36:58 -04:00
30ee6bf5d2
gnu: dejagnu: Update to 1.6.1.
...
* gnu/packages/dejagnu.scm (dejagnu): Update to 1.6.1.
2017-11-02 13:12:15 +02:00
50e3f2a5a4
gnu: emacs-helm-make: Update to 0.1.0-1.21c1bfa.
...
* gnu/packages/emacs.scm (emacs-helm-make): Update to 0.1.0-1.21c1bfa.
2017-11-02 11:05:46 +03:00
a254971350
gnu: units: Add readline input.
...
* gnu/packages/maths.scm (units)[inputs]: Add readline.
2017-11-01 17:17:01 -05:00
0498d24866
gnu: units: Add python input.
...
* gnu/packages/maths.scm (units)[inputs]: New field.
[arguments]: New field. Add 'wrap-units_cur phase.
2017-11-01 17:15:10 -05:00
f11d2849a1
gnu: units: Update to 2.16.
...
* gnu/packages/maths.scm (units): Update to 2.16.
2017-11-01 17:11:15 -05:00
55ed15baba
gnu: gnome-mines: Update to 3.26.0.
...
* gnu/packages/gnome.scm (gnome-mines): Update to 3.26.0.
2017-11-01 19:49:46 -04:00
88b35013b7
gnu: git: Update to 2.15.0.
...
* gnu/packages/version-control.scm (git): Update to 2.15.0.
2017-11-01 21:26:58 +01:00
61e1d6a791
gnu: imagemagick: Update to 6.9.9-21.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-21.
[home-page]: Use HTTPS.
2017-11-01 21:26:50 +01:00
449ad88bb5
gnu: libass: Update to 0.14.0.
...
* gnu/packages/video.scm (libass): Update to 0.14.0.
[native-inputs]: Change from YASM to NASM.
2017-11-01 20:29:32 +01:00
83a7a88f93
gnu: feh: Enable tests.
...
* gnu/packages/image-viewers.scm (feh)[arguments]: Remove #:tests?. Add
#:test-target.
[native-inputs]: Add PERL and PERL-TEST-COMMAND. New field.
2017-11-01 20:29:32 +01:00
6b520156c2
gnu: Add perl-test-command.
...
* gnu/packages/perl.scm (perl-test-command): New public variable.
2017-11-01 20:29:32 +01:00
5010d0e364
gnu: wine64: Add aarch64-linux to supported-systems.
...
* gnu/packages/wine.scm (wine64)[supported-systems]: Add aarch64-linux.
2017-11-01 10:17:18 +02:00
03d6e9dd08
gnu: vsearch: Update to 2.5.2.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.5.2.
2017-11-01 10:57:05 +10:00
e126b79736
gnu: diamond: Update to 0.9.11.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.11.
2017-11-01 10:57:03 +10:00
e6ee13599d
gnu: libfilezilla: Update to 0.11.1.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.11.1.
2017-11-01 01:02:04 +01:00
9b5db24e7a
gnu: gnome-mpv: Update to 0.13.
...
* gnu/packages/video.scm (gnome-mpv): Update to 0.13.
2017-11-01 01:02:04 +01:00
78ab71ce1d
gnu: you-get: Update to 0.4.939.
...
* gnu/packages/video.scm (you-get): Update to 0.4.939.
2017-11-01 01:02:03 +01:00
bc8bd40e6a
gnu: ncmpcpp: Update to 0.8.1.
...
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.8.1.
2017-10-31 18:13:53 -04:00
cd5c3979d1
gnu: Add emacs-ggtags.
...
* gnu/packages/emacs.scm (emacs-ggtags): New variable.
2017-10-31 20:08:00 +03:00
90bf26088e
gnu: Add sakura.
...
* gnu/packages/terminals.scm (sakura): New variable.
2017-10-31 09:41:52 -04:00
016590a951
gnu: Add emacs-company-quickhelp.
...
* gnu/packages/emacs.scm (emacs-company-quickhelp): New variable.
2017-10-31 14:55:18 +03:00
56295c5160
gnu: lxc: Update to 2.1.1.
...
* gnu/packages/virtualization.scm (lxc): Update to 2.1.1.
2017-10-31 19:28:09 +08:00
2e4bb8c817
gnu: Add emacs-helm-make.
...
* gnu/packages/emacs.scm (emacs-helm-make): New variable.
2017-10-31 14:10:37 +03:00
7bf59f7021
gnu: Remove cufflinks.
...
Cufflinks includes essential non-free code.
Fixes <https://bugs.gnu.org/28946 >.
* gnu/packages/bioinformatics.scm (cufflinks): Remove variable.
2017-10-31 08:17:06 +01:00
b275cd22d4
gnu: apr-util: Update to 1.6.1 [fixes CVE-2017-12618].
...
* gnu/packages/apr.scm (apr): Update to 1.6.1.
2017-10-30 21:46:18 -04:00
b614c48017
gnu: apr: Update to 1.6.3 [fixes CVE-2017-12613].
...
* gnu/packages/apr.scm (apr): Update to 1.6.3.
2017-10-30 21:46:18 -04:00
3022680aba
gnu: mpd: Update to 0.20.11.
...
* gnu/packages/mpd.scm (mpd): Update to 0.20.11.
2017-10-30 21:46:14 -04:00
44b8823fc7
gnu: quagga: Update to 1.2.2 [fix CVE-2017-16227].
...
* gnu/packages/networking.scm (quagga): Update to 1.2.2.
2017-10-30 20:42:13 -04:00
8b17ee4846
gnu: webkitgtk: Update to 2.18.2.
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.2.
2017-10-30 20:07:00 -04:00
c2eb8cd98c
gnu: xorg-server: Build reproducibly.
...
Fixes <https://bugs.gnu.org/24112 >.
* gnu/packages/xorg.scm (xorg-server)[arguments]: Pass "--with-os-name"
and "--with-os-vendor" as #:configure-flags.
Augment 'pre-configure' phase to set 'BUILD_DATE' and 'BUILD_TIME' in
'configure'.
2017-10-31 00:51:37 +01:00
8ff5b8aaa3
gnu: perl-http-cookies: Fix source uri.
...
This is a follow-up to d284f01826
2017-10-30 19:49:37 +02:00
484a1c05d0
gnu: ola: Update to 0.10.5.
...
* gnu/packages/lighting.scm (ola): Update to 0.10.5.
2017-10-30 17:20:43 +01:00
59261ebeea
gnu: ethtool: Update to 4.13.
...
* gnu/packages/networking.scm (ethtool): Update to 4.13.
2017-10-30 17:20:42 +01:00
2fb83ca6c5
gnu: perl-class-tiny: Update to 1.006.
...
* gnu/packages/perl.scm (perl-class-tiny): Update to 1.006.
2017-10-30 17:20:42 +01:00
7e5132a297
gnu: perl-extutils-pkgconfig: Update to 1.16.
...
* gnu/packages/perl.scm (perl-extutils-pkgconfig): Update to 1.16.
2017-10-30 17:20:41 +01:00
72ef03b92b
gnu: perl-json-any: Update to 1.39.
...
* gnu/packages/perl.scm (perl-json-any): Update to 1.39.
2017-10-30 17:20:41 +01:00
caa7adacce
gnu: perl-sub-exporter-progressive: Update to 0.001013.
...
* gnu/packages/perl.scm (perl-sub-exporter-progressive): Update to 0.001013.
2017-10-30 17:20:41 +01:00
922814ae65
gnu: perl-html-lint: Update to 2.26.
...
* gnu/packages/perl.scm (perl-html-lint): Update to 2.26.
2017-10-30 17:20:40 +01:00
d284f01826
gnu: perl-http-cookies: Update to 6.04.
...
* gnu/packages/perl.scm (perl-http-cookies): Update to 6.04.
2017-10-30 17:20:40 +01:00
58ade30228
gnu: perl-xml-libxml: Update to 2.0132.
...
* gnu/packages/xml.scm (perl-xml-libxml): Update to 2.0132.
2017-10-30 17:20:07 +01:00
faffd821f3
gnu: wine: Update to 2.0.3.
...
* gnu/packages/wine.scm (wine): Update to 2.0.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-10-30 10:42:20 -04:00
8fd4320033
gnu: ffmpeg: Configure with frei0r.
...
* gnu/packages/video.scm (ffmepg)[inputs]: Add 'frei0r-plugins'.
(arguments)[configure-flags]: Add '--enable-frei0r' and remove
'TODO' comment about frei0r.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-10-30 15:43:21 +02:00
49e1d76dd9
gnu: Add frei0r-plugins.
...
* gnu/packages/video.scm (frei0r-plugins): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-10-30 15:43:21 +02:00
1f6f4c40c1
gnu: Add r-tgconfig.
...
* gnu/packages/statistics.scm (r-tgconfig): New variable.
2017-10-30 12:07:53 +01:00
7941d1ed5d
gnu: Add r-tgstat.
...
* gnu/packages/statistics.scm (r-tgstat): New variable.
2017-10-30 12:07:51 +01:00
491dc2fb16
gnu: java: Fix libjvm.so linkage problem in icedtea-7.
...
* gnu/packages/java.scm (icedtea-7): Add phase to create a symbolic link to
libjvm.so.
2017-10-30 11:19:51 +01:00
73f71bc9b7
gnu: tig: Update to 2.3.0.
...
* gnu/packages/version-control.scm (tig): Update to 2.3.0.
[source]: Download from Github.
[home-page]: Update to new home-page.
2017-10-29 22:35:56 +02:00
0c6f4bec2e
gnu: Add newsboat.
...
* gnu/packages/syndication.scm (newsboat): New variable.
2017-10-29 22:02:44 +02:00
f7ddf99696
gnu: icecat: Add more fixes from upstream mozilla-esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
2017-10-29 15:29:18 -04:00
c9dc457711
gnu: mu: Add build phase to fix library reference.
...
* gnu/packages/mail.scm (mu)[arguments]: Add build phase "fix-ffi" to fix
reference to libguile-mu library.
2017-10-29 18:30:58 +01:00
d59ec12975
gnu: mu: Use Guile 2.2.
...
* gnu/packages/mail.scm (mu)[inputs]: Replace guile-2.0 with guile-2.2.
[arguments]: Replace references to version 2.0.
2017-10-29 18:30:58 +01:00
8de54944f7
gnu: offlineimap: Update to 7.1.4.
...
* gnu/packages/mail.scm (offlineimap): Update to 7.1.4.
2017-10-29 17:32:39 +01:00
8281f8263d
gnu: youtube-dl: Update to 2017.10.29.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.10.29.
2017-10-29 17:32:39 +01:00
be03120d78
gnu: perl-test-www-mechanize-psgi: Update to 0.37.
...
gnu/packages/web.scm (perl-test-www-mechanize-psgi): Update to 0.37.
2017-10-29 17:32:38 +01:00
303c68588a
gnu: perl-test-www-mechanize: Update to 1.48.
...
gnu/packages/web.scm (perl-test-www-mechanize): Update to 1.48.
2017-10-29 17:32:38 +01:00
c2d1b935e0
gnu: perl-uri-find: Update to 20160806.
...
* gnu/packages/web.scm (perl-uri-find): Update to 20160806.
2017-10-29 17:32:38 +01:00
4f50fd752b
gnu: perl-email-mime: Update to 1.946.
...
* gnu/packages/mail.scm (perl-email-mime): Update to 1.946.
[propagated-inputs]: Add perl-module-runtime.
2017-10-29 17:32:37 +01:00
9b5fc20c4e
gnu: perl-email-mime-contenttype: Update to 1.022.
...
* gnu/packages/mail.scm (perl-email-mime-contenttype): Update to 1.022.
2017-10-29 17:32:37 +01:00
25adc0066a
gnu: perl-email-simple: Update to 2.214.
...
* gnu/packages/mail.scm (perl-email-simple): Update to 2.214.
2017-10-29 17:32:36 +01:00
801eb74620
gnu: perl-email-sender: Update to 1.300031.
...
* gnu/packages/mail.scm (perl-email-sender): Update to 1.300031.
2017-10-29 17:32:36 +01:00
adce670797
gnu: perl-tie-cycle: Update to 1.225.
...
* gnu/packages/perl.scm (perl-tie-cycle): Update to 1.225.
2017-10-29 15:22:24 +01:00
ec4e2b24a7
gnu: perl-text-table: Update to 1.133.
...
* gnu/packages/perl.scm (perl-text-table): Update to 1.133.
2017-10-29 15:22:23 +01:00
c97dadcc97
gnu: perl-safe-isa: Update to 1.000008.
...
* gnu/packages/perl.scm (perl-safe-isa): Update to 1.000008.
2017-10-29 15:22:21 +01:00
384dec0889
gnu: perl-log-log4perl: Update to 1.49.
...
* gnu/packages/perl.scm (perl-log-log4perl): Update to 1.49.
2017-10-29 15:22:20 +01:00
dbbc8f5a86
gnu: perl-file-sharedir-dist: Update to 0.05.
...
* gnu/packages/perl.scm (perl-file-sharedir-dist): Update to 0.05.
2017-10-29 15:22:19 +01:00
37fcabf0ef
gnu: perl-business-ismn: Update to 1.131.
...
* gnu/packages/perl.scm (perl-business-ismn): Update to 1.131.
2017-10-29 15:22:17 +01:00
6a2c510dc5
gnu: perl-net-dns: Update to 1.13.
...
* gnu/packages/networking.scm (perl-net-dns): Update to 1.13.
2017-10-29 15:22:16 +01:00
11e5e932ad
gnu: conkeror: Update to 1.1.0.
...
* gnu/packages/conkeror.scm (conkeror): Update to 1.1.0.
2017-10-29 11:21:12 +01:00
53a3f5d792
gnu: giac-xcas: Update to 1.4.9-17.
...
* gnu/packages/algebra.scm (giac-xcas): Update to 1.4.9-17. Remove
unnecessary workaround about failing test.
2017-10-29 10:06:44 +01:00
4a8bd5500d
gnu: scribus: Update to 1.5.3. Add inputs.
...
* gnu/packages/scribus.scm (scribus): Update to 1.5.3.
[input]: Add fontconfig, harfbuzz, hunspell, icu4c, libcdr, libfreehand,
libmspub, librevenge, libvisio, openssl, podofo, poppler, and boost. Move
qttools to ...
[native-input]: ... here.
[home-page]: Fix URL.
Co-authored-by: Eric Bavier <bavier@member.fsf.org>
2017-10-29 09:09:56 +01:00
9de52b5643
gnu: perl-sys-cpu: Skip cpu_clock and cpu_type tests.
...
* gnu/packages/perl.scm (perl-sys-cpu)[source]: Replace test in snippet.
2017-10-28 18:20:58 -05:00
0f27666b91
gnu: linux-libre: Update to 4.13.10.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.10.
(%linux-libre-hash): Update hash.
2017-10-28 22:29:01 -04:00
88deca15b5
gnu: linux-libre@4.9: Update to 4.9.59.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.59.
2017-10-28 22:28:23 -04:00
813b4454a8
gnu: linux-libre@4.4: Update to 4.4.95.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.95.
2017-10-28 22:27:37 -04:00
c178aa344f
gnu: gavl: Fix building on armhf and aarch64.
...
* gnu/packages/video.scm (gavl)[arguments]: Add '-lm' to configure flags.
2017-10-28 23:11:12 +03:00
4b86f04a51
gnu: neomutt: Remove obsolete configure switches.
...
* gnu/packages/mail.scm (neomutt)[arguments]: Remove '--with-regex'
and '--with-external-dotlock' from configure-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:54:42 +02:00
32fc1ec3d5
gnu: neomutt: Do not inherit mutt.
...
* gnu/packages/mail.scm (neomutt): Remove (inherit mutt),
add 'build-system' and 'license'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:54:36 +02:00
7de23b02a1
gnu: neomutt: Update to 20171027.
...
* gnu/packages/mail.scm (neomutt): Update to 20171027.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:54:25 +02:00
bf1264ab70
gnu: emacs-yasnippet: Update to 0.12.2.
...
* gnu/packages/emacs.scm (emacs-yasnippet): Update to 0.12.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:31 +02:00
8a0d454eed
gnu: emacs-elfeed: Update to 2.2.0.
...
* gnu/packages/emacs.scm (emacs-elfeed): Update to 2.2.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:29 +02:00
9932dabfb6
gnu: emacs-hydra: Update to 0.14.0.
...
* gnu/packages/emacs.scm (emacs-hydra): Update to 0.14.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:25 +02:00
2b0ddaaac7
gnu: emacs-f: Update to 0.19.0.
...
* gnu/packages/emacs.scm (emacs-f): Update to 0.19.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:22 +02:00
4e4255849d
gnu: emacs-s: Update to 1.12.0.
...
* gnu/packages/emacs.scm (emacs-s): Update to 1.12.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:18 +02:00
c54a8fdf90
gnu: Update php to 7.1.11.
...
* gnu/packages/php.scm (php): Update to 7.1.11.
2017-10-28 14:19:15 +02:00
90ab26fa26
gnu: Add ocaml-utop.
...
* gnu/packages/ocaml.scm (ocaml-utop): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:33:59 +02:00
50856b7342
gnu: Add ocaml-findlib-1.7.3.
...
* gnu/packages/ocaml.scm (ocaml-findlib-1.7.3): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:33:46 +02:00
e88ff71c10
gnu: Add ocaml-lambda-term.
...
* gnu/packages/ocaml.scm (ocaml-zed): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:12:20 +02:00
cd4abd293d
gnu: Add ocaml-zed.
...
* gnu/packages/ocaml.scm (ocaml-zed): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:09:02 +02:00
c00233ac16
gnu: Add ocaml-jbuilder.
...
* gnu/packages/ocaml.scm (ocaml-jbuilder): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:00:09 +02:00
ed1f071e98
gnu: perl-net-dns: Update to 1.13.
...
* gnu/packages/networking.scm (perl-net-dns): Update to 1.13.
2017-10-28 01:55:26 +02:00
e13a63d933
gnu: perl-xml-libxml: Update to 2.0131.
...
* gnu/packages/xml.scm (perl-xml-libxml): Update to 2.0131.
2017-10-28 01:55:26 +02:00
50942a690e
gnu: kicad: Build with ngspice support.
...
* gnu/packages/engineering.scm (kicad):
[arguments] <configure-flags>: Add KICAD_SPICE flag.
[inputs]: Add libngspice.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 13:03:39 -07:00
c48799c0a5
gnu: kicad: Update to commit 5f4599f.
...
* gnu/packages/engineering.scm (kicad): Update to commit 5f4599f.
[arguments]: Add "install-lib-3d" phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 13:03:18 -07:00
c16fabfa9e
gnu: kicad-library: Update to 4.0.6.
...
* gnu/packages/engineering.scm (kicad-library): Update to 4.0.6.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 13:00:39 -07:00
c31b61ef53
gnu: Add qucs.
...
* gnu/packages/engineering.scm (qucs): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 12:42:49 -07:00
40a99ca014
gnu: freehdl: Depend on the current 'gcc-toolchain'.
...
* gnu/packages/engineering.scm (freehdl)[inputs]: Change
'gcc-toolchain-5' to 'gcc-toolchain'.
2017-10-27 12:37:38 -07:00
b887ede17d
gnu: gcc: Add unversioned 'gcc-toolchain' variable.
...
Reported by Theodoros Foradis <theodoros@foradis.org>.
* gnu/packages/commencement.scm (gcc-toolchain): Rename to...
(make-gcc-toolchain): ... this.
(gcc-toolchain): New variable.
(gcc-toolchain-5): Turn into an alias for 'gcc-toolchain'.
2017-10-27 12:35:49 -07:00
99b9857be7
gnu: Add Catalan dictionary for Aspell.
...
Hola!
* gnu/packages/aspell.scm (aspell-dict-ca): New variable.
2017-10-27 11:57:47 -07:00
085bcca313
gnu: Add hunspell-dict-en*.
...
* gnu/packages/aspell.scm (aspell-word-list): New procedure.
(define-word-list-dictionary): New macro.
(hunspell-dict-en, hunspell-dict-en-au, hunspell-dict-en-ca)
(hunspell-dict-en-gb, hunspell-dict-en-gb-ize, hunspell-dict-en-us): New
variables.
2017-10-27 09:33:15 -07:00
d3f9589842
gnu: freehdl: Fix gvhdl and freehdl-gennodes scripts.
...
* gnu/packages/engineering.scm (freehdl):
[arguments] <phases>: Add patch-gvhdl and patch-freehdl-gennodes phases.
Wrap-program "/bin/gvhdl" in make-wrapper phase.
[inputs]: Add guile-2.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 09:33:15 -07:00
e37bdc0f28
gnu: Add gavl.
...
* gnu/packages/video.scm (gavl): New variable.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-10-27 08:25:55 -04:00
c50fe6c291
gnu: Add python-pycanberra.
...
* gnu/packages/libcanberra.scm (python-pycanberra): New variable.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-10-27 08:25:55 -04:00
635f981b9a
gnu: Add gst-transcoder.
...
* gnu/packages/video.scm (gst-transcoder): New variable.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-10-27 08:25:54 -04:00
58a308e0b4
gnu: Add gwl.
...
* gnu/packages/package-management.scm (gwl): New variable.
2017-10-27 11:17:43 +02:00
4119376d66
gnu: exiv2: Add upstream security fixes.
...
Fixes CVE-2017-14859, CVE-2017-14860, CVE-2017-14862 and CVE-2017-14864.
* gnu/packages/patches/exiv2-CVE-2017-14859-14862-14864.patch,
gnu/packages/patches/exiv2-CVE-2017-14860.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/image.scm (exiv2)[source]: Use them.
2017-10-27 00:50:09 +02:00
ba2cd6c2d8
gnu: synergy: Update repository URI and hash.
...
* gnu/packages/synergy.scm (synergy)[uri]: Replace synergy by synergy-core.
[sha256]: Update to reflect the name change of the archive root directory.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-26 15:45:14 -07:00
3414ce9876
gnu: snakemake: Update to 4.2.0.
...
* gnu/packages/python.scm (snakemake): Update to 4.2.0.
[propagated-inputs]: Add python-appdirs, python-configargparse, python-pyyaml,
and python-ratelimiter, which are dependencies as of Snakemake 4.1.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-10-27 00:42:06 +02:00
9d0866ce1b
gnu: Add python-ratelimiter.
...
* gnu/packages/python.scm (python-ratelimiter, python2-ratelimiter): New
variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-10-27 00:42:06 +02:00
b89e3c77c6
gnu: python-configargparse: Update to 0.12.0.
...
* gnu/packages/python.scm (python-configargparse, python2-configargparse):
Update to 0.12.0.
[arguments]: Enable tests.
[native-inputs]: Add python-pyyaml, which is an optional dependency but
required to run the tests.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-10-27 00:42:06 +02:00
750e9f15a3
gnu: xpra: Update to 2.1.3.
...
* gnu/packages/xorg.scm (xpra): Update to 2.1.3.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-10-27 00:42:06 +02:00
256ecba1a1
gnu: ansible: Update to 2.4.1.0.
...
* gnu/packages/admin.scm (ansible): Update to 2.4.1.0.
2017-10-27 00:30:49 +02:00
1c2adcd6b9
gnu: ffmpeg@3.3: Update to 3.3.5.
...
* gnu/packages/video.scm (ffmpeg-3.3): Update to 3.3.5.
2017-10-27 00:03:17 +02:00
b1c01503df
gnu: Add ffmpeg@3.3 and use it on packages that fail with 3.4.
...
* gnu/packages/gstreamer.scm (gst-libav)[inputs]: Change ffmpeg to ffmpeg-3.3.
* gnu/packages/messaging.scm (qtox)[inputs]: Change ffmpeg to ffmpeg-3.3.
* gnu/packages/video.scm (ffmpeg-3.3): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-10-27 00:01:53 +02:00
6b88912eb6
gnu: wget: Update to 1.19.2 [fixes CVE-2017-13089 and CVE-2017-13090].
...
* gnu/packages/wget.scm (wget): Update to 1.19.2.
[source](uri): Change to '.lz' tarball.
[source](patches): Remove.
[native-inputs]: Add LZIP.
* gnu/packages/patches/wget-CVE-2017-6508.patch,
gnu/packages/patches/wget-fix-504-test-timeout.patch,
gnu/packages/patches/wget-perl-5.26.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-10-26 23:45:17 +02:00
2e205c6193
gnu: openrct2: Fix a few paths.
...
* gnu/packages/games.scm (openrct2): Fix a few paths.
2017-10-26 20:07:50 +02:00
0cbcab7254
gnu: go: Update to 1.9.2.
...
* gnu/packages/golang.scm (go-1.9): Update to 1.9.2.
2017-10-26 12:14:33 -04:00
436594ca47
gnu: ffmpeg: Update to 3.4.
...
* gnu/packages/video.scm (ffmpeg): Update to 3.4.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-10-26 12:14:30 -04:00
bc709e0377
gnu: node: Update to 8.7.0.
...
* gnu/packages/node.scm (node): Update to 8.7.0.
(node)[arguments]: Removed dgram mutlicast test. Removed dns test. Removed
broken linter test workaround.
2017-10-26 12:57:43 +02:00
ed5e9a33f8
gnu: vsearch: Update to 2.5.1.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.5.1.
2017-10-26 19:55:29 +10:00
8ba3f751b6
gnu: r-nloptr: Update package hash.
...
The source was repacked and reuploaded without incrementing the version
number. The difference was windows line endings on the windows files.
* gnu/packages/statistics.scm (r-nloptr)[source]: Update package hash.
2017-10-26 10:46:02 +03:00
e5af1f4af3
gnu: sorcer: Fix building on non-Intel hardware.
...
* gnu/packages/music.scm (sorcer)[arguments]: Add phase to remove
architecture specific build flags.
2017-10-26 08:37:40 +03:00
b1e9837a3c
gnu: virt-manager: Enable persistent configuration support.
...
* gnu/packages/virtualization.scm (virt-manager)[inputs]: Add dconf.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:26:15 -07:00
f023685dca
gnu: virt-manager: Wrap with GSettings schema and GIO modules search paths.
...
Fixes a crash when opening the file chooser dialog.
* gnu/packages/virtualization.scm (virt-manager)[arguments]
<#:imported-modules>: Add (guix build glib-or-gtk-build-system).
<#:modules>: Import (guix build glib-or-gtk-build-system) as glib-or-gtk:.
<#:arguments>: Add 'glib-or-gtk-compile-schemas and 'glib-or-gtk-wrap.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:26:15 -07:00
60e9529729
gnu: Add python2-roca-detect.
...
* gnu/packages/crypto.scm (python2-roca-detect): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:26:15 -07:00
7756eab078
gnu: Add python2-pgpdump.
...
* gnu/packages/gnupg.scm (python2-pgpdump): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:25:57 -07:00
0046309398
gnu: Add python-coloredlogs.
...
* gnu/packages/python.scm (python-coloredlogs, python2-coloredlogs): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:25:20 -07:00
7d4147634b
gnu: Add python-verboselogs.
...
* gnu/packages/python.scm (python-verboselogs, python2-verboselogs): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:25:20 -07:00
2a81537f2f
gnu: Add python-capturer.
...
* gnu/packages/python.scm (python-capturer, python2-capturer): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:25:19 -07:00
92eb9a3535
gnu: Add python-humanfriendly.
...
* gnu/packages/python.scm (python-humanfriendly, python2-humanfriendly):
New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:25:19 -07:00
17650569d4
gnu: Fix Leo Famulari's copyright statement in (gnu packages calcurse).
...
* gnu/packages/calcurse.scm: Fix copyright statement.
2017-10-25 14:45:43 -04:00
a23dbbff14
gnu: calcurse: Used the "fixed" test-only tzdata for tests.
...
* gnu/packages/calcurse.scm (calcurse)[inputs]: Remove tzdata and add ...
[native-inputs]: tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
2017-10-25 14:44:38 -04:00
c4b542ffd4
gnu: parallel: Update to 20171022.
...
* gnu/packages/parallel.scm (parallel): Update to 20171022.
2017-10-25 21:37:53 +03:00
63bbf38fb1
gnu: expat: Update replacement to 2.2.4 [security fixes].
...
See 'Changes' in the source distribution for more information about the
fixed security issues.
* gnu/packages/xml.scm (expat)[replacement]: Update to 2.2.4.
(expat-2.2.2): Replace with...
(expat-2.2.4): ...new variable.
2017-10-25 19:06:37 +02:00
c61cac6902
gnu: tor: Update to 0.3.1.8.
...
* gnu/packages/tor.scm (tor): Update to 0.3.1.8.
2017-10-25 18:13:09 +02:00
65808ba4ec
gnu: sssd: Add missing word to description.
...
* gnu/packages/sssd.scm (sssd)[description]: Fix typo.
2017-10-25 18:13:08 +02:00
06c1304652
gnu: sssd: Update to 1.16.0.
...
* gnu/packages/sssd.scm (sssd): Update to 1.16.0.
2017-10-25 18:13:08 +02:00
3d96f2320a
gnu: ding-libs: Update to 0.6.1.
...
* gnu/packages/sssd.scm (ding-libs): Update to 0.6.1.
2017-10-25 18:13:08 +02:00
a6e67d867c
gnu: r-ff: Remove aarch64-linux from supported-systems.
...
* gnu/packages/cran.scm (r-ff)[supported-systems]: New field.
2017-10-25 19:07:11 +03:00
dda785f660
gnu: go@1.4: Limit supported systems.
...
* gnu/packages/golang.scm (go@1.4)[supported-systems]: New field,
Limit supported systems to x86_64-linux, i686-linux and armhf-linux.
(go@1.9)[supported-systems]: New field.
2017-10-25 19:07:10 +03:00
c633b911ce
gnu: perl-moox-file-configdir: Fix source URL.
...
* gnu/packages/perl.scm (perl-moox-file-configdir)[source]: Fix typo in source
URL.
2017-10-25 16:40:09 +02:00
4c77abc4da
gnu: Add r-forcats.
...
* gnu/packages/statistics.scm (r-forcats): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 16:24:03 +02:00
6a23c8b183
gnu: Add sqlite-with-fts3.
...
* gnu/packages/databases.scm (sqlite-with-fts3): New variable.
Co-authored-by: Pierre Langlois <pierre.langlois@gmx.com>
2017-10-25 15:13:38 +02:00
de98f4ed55
gnu: Add crypto++.
...
* gnu/packages/crypto.scm (crypto++): New variable.
* gnu/packages/patches/crypto++-fix-dos-in-asn.1-decoders.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 14:54:13 +02:00
60b7ed9cb8
gnu: Add libechonest.
...
* gnu/packages/music.scm (libechonest): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 14:54:13 +02:00
412d00728e
gnu: Add qjson.
...
* gnu/packages/web.scm (qjson): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 14:54:09 +02:00
15b0844257
gnu: Add parcimonie.
...
* gnu/packages/gnupg.scm (parcimonie): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 10:49:38 +02:00
985c41458d
gnu: Add perl-browser-open.
...
* gnu/packages/perl.scm (perl-browser-open): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 10:49:38 +02:00
65f7f60693
gnu: Add perl-b-keywords.
...
* gnu/packages/perl.scm (perl-b-keywords): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 10:49:38 +02:00
2a013d0f09
gnu: Add perl-carp-always.
...
* gnu/packages/perl.scm (perl-carp-always): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 10:49:38 +02:00
fc4083c54f
gnu: Add perl-net-dbus-glib.
...
* gnu/packages/glib.scm (perl-net-dbus-glib): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 10:49:38 +02:00
a372c4da2f
gnu: Add perl-net-dbus.
...
* gnu/packages/glib.scm (perl-net-dbus): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 10:49:37 +02:00
24404eaf93
gnu: dealii: Update to 8.5.1.
...
Fixes compilation with boost@1.64.0.
* gnu/packages/maths.scm (dealii): Update to 8.5.1.
2017-10-24 20:16:50 -05:00
4150da630f
gnu: p4est: Update to 2.0.
...
* gnu/packages/maths.scm (p4est): Update to 2.0.
2017-10-24 20:16:50 -05:00
9ce587f231
gnu: libhilbert: Remove package.
...
This package's source and webpage has disappeared for some time, and upstream
projects (e.g. libmesh) seem to be bundling it, so we remove it for now.
* gnu/packages/maths.scm (libhilbert): Remove variable.
2017-10-24 20:16:49 -05:00
958b5a1caa
gnu: slepc: Update to 3.8.0.
...
* gnu/packages/maths.scm (slepc): Update to 3.8.0.
2017-10-24 20:16:49 -05:00
6fec298d3e
gnu: petsc: Update to 3.8.0.
...
* gnu/packages/maths.scm (petsc): Update to 3.8.0
[native-inputs]: Remove perl, which is no longer needed.
2017-10-24 20:16:42 -05:00
6f141eff47
gnu: bwa: Update to 0.7.17.
...
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.17.
2017-10-25 09:29:22 +10:00
ae6e00f6f9
gnu: bwa: Change source URL to GitHub.
...
* gnu/packages/bioinformatics.scm (bwa)[source]: Change source URL to
GitHub.
2017-10-25 09:29:22 +10:00
85c991b029
gnu: Add perl-moox-options.
...
* gnu/packages/perl.scm (perl-moox-options): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:25 +02:00
68998abd4f
gnu: perl-getopt-long-descriptive: Update to 0.100.
...
* gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.100.
[native-inputs]: Add perl-cpan-meta-check.
2017-10-24 23:30:24 +02:00
b936ddf312
gnu: Add perl-moox-configfromfile.
...
* gnu/packages/perl.scm (perl-moox-configfromfile): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:24 +02:00
8df39f572c
gnu: Add perl-moox-file-configdir.
...
* gnu/packages/perl.scm (perl-moox-file-configdir): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:24 +02:00
658a4976fa
gnu: Add perl-moox-cmd.
...
* gnu/packages/perl.scm (perl-moox-cmd): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:24 +02:00
b547ef1d09
gnu: perl-list-moreutils: Update to 0.426.
...
* gnu/packages/perl.scm (perl-list-moreutils): Update to 0.426.
[arguments]: Work around dotless @INC problem.
[native-inputs]: Add perl-test-leaktrace; remove perl-inc-latest and
perl-test-writevariants.
[propagated-inputs]: Add perl-list-moreutils-xs.
2017-10-24 23:30:24 +02:00
189bfb1112
gnu: Add perl-list-moreutils-xs.
...
* gnu/packages/perl.scm (perl-list-moreutils-xs): New variable.
2017-10-24 23:30:24 +02:00
544dc8d46b
gnu: Add perl-libintl-perl.
...
* gnu/packages/perl.scm (perl-libintl-perl): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
180411e3f4
gnu: Add perl-file-configdir.
...
* gnu/packages/perl.scm (perl-file-configdir): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
987232e67d
gnu: Add perl-data-record.
...
* gnu/packages/perl.scm (perl-data-record): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
8dca3bde0e
gnu: Add perl-data-printer.
...
* gnu/packages/perl.scm (perl-data-printer): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
857d75388b
gnu: Add perl-clone-pp.
...
* gnu/packages/perl.scm (perl-clone-pp): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
0de1e5e557
gnu: Add perl-data.
...
* gnu/packages/perl.scm (perl-data): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
6bf249211d
gnu: gnurl: Update to 7.56.1.
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.56.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-10-24 17:19:15 -04:00
648c896ad3
gnu: screen: Update to 4.6.2.
...
* gnu/packages/screen.scm (screen): Update to 4.6.2.
2017-10-24 21:26:19 +03:00
ae7e24c421
gnu: mupdf: Fix CVE-2017-{14685,14686,14687}.
...
* gnu/packages/patches/mupdf-CVE-2017-14685.patch,
gnu/packages/patches/mupdf-CVE-2017-14686.patch,
gnu/packages/patches/mupdf-CVE-2017-14687.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
2017-10-24 13:44:34 -04:00
6dcc8239be
gnu: icu4c: Fix CVE-2017-14952.
...
* gnu/packages/patches/icu4c-CVE-2017-14952.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c-fixed): New variable.
2017-10-24 13:10:35 -04:00
c330c27f7f
gnu: syncthing: Split into two outputs.
...
* gnu/packages/syncthing.scm (syncthing)[outputs]: New field.
[arguments]: Change the 'install' and 'install-docs' phases to install to the
two outputs.
2017-10-24 13:10:35 -04:00
1899ef0b83
gnu: syncthing: Use install-source? to disable installing the source code.
...
* gnu/packages/syncthing.scm (syncthing): Set #:install-source? #f
instead of deleting the install-source phase.
2017-10-24 13:10:35 -04:00
22473f6964
gnu: Add perl-types-path-tiny.
...
* gnu/packages/perl.scm (perl-types-path-tiny): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
35aaf4b1bd
gnu: Add perl-type-tiny-xs.
...
* gnu/packages/perl.scm (perl-type-tiny-xs): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
237edb6d1f
gnu: Add perl-test-taint.
...
* gnu/packages/perl.scm (perl-test-taint): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
cb2f48e7f2
gnu: Add perl-term-size-any.
...
* gnu/packages/perl.scm (perl-term-size-any): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
fcbc997e03
gnu: Add perl-term-size-perl.
...
* gnu/packages/perl.scm (perl-term-size-perl): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
a1798ee3c7
gnu: Add perl-devel-hide.
...
* gnu/packages/perl.scm (perl-devel-hide): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:31 +02:00
8ae0558aad
gnu: Add perl-sort-naturally.
...
* gnu/packages/perl.scm (perl-sort-naturally): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:31 +02:00
b6cd89084d
gnu: Add perl-proc-invokeeditor.
...
* gnu/packages/perl.scm (perl-proc-invokeeditor): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:31 +02:00
b44ecca691
gnu: Add perl-archive-extract.
...
* gnu/packages/compression.scm (perl-archive-extract): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:31 +02:00
5aeb661134
gnu: Add perl-gnupg-interface.
...
* gnu/packages/gnupg.scm (perl-gnupg-interface): New variable.
Co-authored-by: Petter <petter@mykolab.ch>
2017-10-24 18:38:31 +02:00
6ee4fd2ae1
gnu: borg: Split up the monolithic man page.
...
* gnu/packages/backup.scm (borg)[arguments]: Rewrite 'install-docs'
phase to install one man page per Borg sub-command.
2017-10-24 10:21:51 -04:00
db4411b42b
gnu: python-docutils: Update to 0.14.
...
* gnu/packages/python.scm (python-docutils, python2-docutils): Update to 0.14.
2017-10-24 10:21:51 -04:00
85f225fbf7
gnu: Add perl-xml-twig.
...
* gnu/packages/xml.scm (perl-xml-twig): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 10:40:49 +02:00
91f2daa58d
gnu: curl: Update replacement to 7.56.1 [fixes CVE-2017-1000257].
...
* gnu/packages/curl.scm (curl-7.56.0): Rename to ...
(curl-7.56.1): ... this. Update to 7.56.1.
(curl)[replacement]: Adjust accordingly.
2017-10-24 08:09:47 +02:00
fc9a93cbf9
gnu: claws-mail: Re-enable vcalendar.
...
* gnu/packages/mail.scm (claws-mail): Use module (gnu packages calendar).
[inputs]: Add libical.
2017-10-24 08:07:24 +02:00
62d48234e2
gnu: git: Update to 2.14.3.
...
* gnu/packages/version-control.scm (git): Update to 2.14.3.
2017-10-24 07:55:34 +02:00
306556528e
gnu: Add sorcer.
...
* gnu/packages/music.scm (sorcer): New variable.
2017-10-24 07:54:43 +02:00
2809a355b6
gnu: Add papagayo.
...
* gnu/packages/animation.scm (papagayo): New variable.
2017-10-24 07:54:43 +02:00
7a04dddd26
gnu: Add perl-html-tidy.
...
* gnu/packages/web.scm (perl-html-tidy): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:06:21 +02:00
0a9bdd9583
gnu: Add tidyp.
...
* gnu/packages/web.scm (tidyp): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:06:20 +02:00
efc8f7d03d
gnu: Add perl-lwp-online.
...
* gnu/packages/web.scm (perl-lwp-online): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:05:28 +02:00
9e88b210f6
gnu: Add perl-xml-handler-yawriter.
...
* gnu/packages/xml.scm (perl-xml-handler-yawriter): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:04:15 +02:00
33b592eed3
gnu: Add perl-xml-sax-writer.
...
* gnu/packages/xml.scm (perl-xml-sax-writer): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:04:15 +02:00
b7c5919514
gnu: Add perl-xml-filter-buffertext.
...
* gnu/packages/xml.scm (perl-xml-filter-buffertext): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:04:14 +02:00
9e1c358139
gnu: Add perl-tree-xpathengine.
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* gnu/packages/xml.scm (perl-tree-xpathengine): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:04:14 +02:00
3b6958021d
gnu: Add perl-xml-xpathengine.
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* gnu/packages/xml.scm (perl-xml-xpathengine): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:04:14 +02:00
6768e0a7a5
gnu: Add java-jboss-javassist.
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* gnu/packages/java.scm (java-jboss-javassist): New variable.
2017-10-23 22:55:29 +02:00
b12fe1e517
gnu: Add java-assertj.
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* gnu/packages/java.scm (java-assertj): New variable.
2017-10-23 22:55:25 +02:00
ec4e8ad724
gnu: Add java-guice-servlet.
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* gnu/packages/java.scm (java-guice-servlet): New variable.
2017-10-23 22:55:21 +02:00
5766984b06
gnu: Add java-guice.
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* gnu/packages/java.scm (java-guice): New variable.
2017-10-23 22:55:18 +02:00
454536e0ce
gnu: Add java-javax-inject.
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* gnu/packages/java.scm (java-javax-inject): New variable.
2017-10-23 22:55:14 +02:00
5d104a2756
gnu: Add java-aopalliance.
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* gnu/packages/java.scm (java-aopalliance): New variable.
2017-10-23 22:55:12 +02:00
213bb98180
gnu: Add java-eclipse-jetty-servlet-9.2.
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* gnu/packages/web.scm (java-eclipse-jetty-servlet-9.2): New variable.
2017-10-23 22:55:09 +02:00
fb680f88e9
gnu: Add java-eclipse-jetty-servlet.
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* gnu/packages/web.scm (java-eclipse-jetty-servlet): New variable.
2017-10-23 22:55:07 +02:00
fa2a23a146
gnu: Add java-eclipse-jetty-security-9.2.
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* gnu/packages/web.scm (java-eclipse-jetty-security-9.2): New variable.
2017-10-23 22:55:04 +02:00
8528e20dff
gnu: Add java-eclipse-jetty-security.
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* gnu/packages/web.scm (java-eclipse-jetty-security): New variable.
2017-10-23 22:55:02 +02:00
e36e2bee46
gnu: Add java-eclipse-jetty-server-9.2.
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* gnu/packages/web.scm (java-eclipse-jetty-server-9.2): New variable.
2017-10-23 22:54:58 +02:00
5d38f7e4e8
gnu: Add java-eclipse-jetty-server.
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* gnu/packages/web.scm (java-eclipse-jetty-server): New variable.
2017-10-23 22:54:56 +02:00
812c712f7a
gnu: Add java-eclipse-jetty-jmx-9.2.
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* gnu/packages/web.scm (java-eclipse-jetty-jmx-9.2): New variable.
2017-10-23 22:54:52 +02:00
4b172061e5
gnu: Add java-eclipse-jetty-jmx.
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* gnu/packages/web.scm (java-eclipse-jetty-jmx): New variable.
2017-10-23 22:54:49 +02:00
821869fcf4
gnu: Add java-eclipse-jetty-http-9.2.
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* gnu/packages/web.scm (java-eclipse-jetty-http-9.2): New variable.
2017-10-23 22:54:47 +02:00
4a1376d3fd
gnu: Add java-eclipse-jetty-http.
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* gnu/packages/web.scm (java-eclipse-jetty-http): New variable.
2017-10-23 22:54:45 +02:00
b90012fddf
gnu: Add java-eclipse-jetty-io-9.2.
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* gnu/packages/web.scm (java-eclipse-jetty-io-9.2): New variable.
2017-10-23 22:54:42 +02:00
b510b7f58f
gnu: Add java-eclipse-jetty-io.
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* gnu/packages/web.scm (java-eclipse-jetty-io): New variable.
2017-10-23 22:54:40 +02:00
5010671d4d
gnu: Add java-eclipse-jetty-util-9.2.
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* gnu/packages/web.scm (java-eclipse-jetty-util-9.2): New variable.
2017-10-23 22:54:38 +02:00
1657d62ae5
gnu: Add java-eclipse-jetty-util.
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* gnu/packages/web.scm (java-eclipse-jetty-util): New variable.
2017-10-23 22:54:35 +02:00
1f985e4497
gnu: Add java-eclipse-jetty-perf-helper.
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* gnu/packages/web.scm (java-eclipse-jetty-perf-helper): New variable.
2017-10-23 22:54:33 +02:00
339bef37cd
gnu: Add java-eclipse-jetty-test-helper.
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* gnu/packages/web.scm (java-eclipse-jetty-test-helper): New variable.
2017-10-23 22:54:30 +02:00
91072287a6
gnu: Add java-tomcat.
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* gnu/packages/web.scm (java-tomcat): New variable.
2017-10-23 22:54:27 +02:00
90a127c7ed
gnu: Add java-hdrhistogram.
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* gnu/packages/web.scm (java-hdrhistogram): New variable.
2017-10-23 22:54:12 +02:00
1a6497dee4
gnu: Add python2-libmpsse.
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* gnu/packages/embedded.scm: Add imports.
(python2-libmpsse): New variable.
2017-10-23 19:11:19 +02:00
cc14a90fd3
gnu: borg: Update to 1.1.1.
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* gnu/packages/backup.scm (borg): Update to 1.1.1.
2017-10-23 14:49:32 +02:00
57af0d13b2
gnu: python-lmdb: Update to 0.93.
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* gnu/packages/databases.scm (python-lmdb): Update to 0.93.
2017-10-23 14:49:32 +02:00
afd845368a
gnu: python-peewee: Update to 2.10.2.
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* gnu/packages/databases.scm (python-peewee): Update to 2.10.2.
2017-10-23 14:49:31 +02:00
6a4ad78dd6
gnu: python-graphviz: Update to 0.8.1.
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* gnu/packages/graphviz.scm (python-graphviz): Update to 0.8.1.
2017-10-23 14:49:31 +02:00
2b1b27990b
gnu: python-graphene: Disable tests.
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* gnu/packages/python.scm (python-graphene)[native-inputs]: Remove.
[arguments]: Disable #:tests.
2017-10-23 14:49:30 +02:00
f737d9f2fb
gnu: python-pytest-django: Use python-pytest@3.
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* gnu/packages/django.scm (python-pytest-django)[propagated-inputs]: Replace
python-pytest with python-pytest-3.0.
2017-10-23 14:49:30 +02:00
ce4dfde0d8
gnu: miso: Update to 0.5.4.
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* gnu/packages/bioinformatics.scm (miso): Update to 0.5.4.
2017-10-23 14:49:29 +02:00
Tobias Geerinckx-Rice