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16965 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice ced2d2b7ca
gnu: libvirt: Update to 3.6.0. 
* gnu/packages/virtualization.scm (libvirt): Update to 3.6.0.
 2017-08-02 07:15:21 +02:00
Tobias Geerinckx-Rice 2e508b6dc0
gnu: libvirt: Use HTTPS. 
* gnu/packages/virtualization.scm (libvirt)[source, home-page]: Use HTTPS.
 2017-08-02 07:15:21 +02:00
Roel Janssen 2f06dc0435
gnu: Add r-rlang. 
* gnu/packages/statistics.scm (r-rlang): New variable.
 2017-08-02 00:57:39 +02:00
Roel Janssen f1915a5dd0
gnu: r-deseq2: Update to 1.16.1. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.1.
 2017-08-02 00:33:23 +02:00
Roel Janssen fd215c2978
gnu: r-annotationforge: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.1.
 2017-08-02 00:33:07 +02:00
Roel Janssen bd4a0bab5f
gnu: r-category: Update to 2.42.1. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.1.
 2017-08-02 00:32:46 +02:00
Roel Janssen 0ff478344b
gnu: r-biocstyle: Update to 2.4.1. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.4.1.
 2017-08-02 00:32:31 +02:00
Roel Janssen 9c4348d8c4
gnu: r-dnacopy: Update to 1.50.1. 
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.1.
 2017-08-02 00:32:11 +02:00
Roel Janssen 3ec25eb2a8
gnu: r-iranges: Update to 2.10.2. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.2.
 2017-08-02 00:31:46 +02:00
Roel Janssen 6252dd0f15
gnu: r-genomeinfodb: Update to 1.12.2. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.12.2.
 2017-08-02 00:31:28 +02:00
Roel Janssen 48f5d283b2
gnu: r-variantannotation: Update to 1.22.3. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.3.
 2017-08-02 00:31:08 +02:00
Roel Janssen 1b4738e23c
gnu: r-limma: Update to 3.32.5. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.5.
 2017-08-02 00:30:49 +02:00
Roel Janssen 1898a7832f
gnu: r-biobase: Update to 2.36.2. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.2.
 2017-08-02 00:30:27 +02:00
Roel Janssen 62eb93a7d0
gnu: r-annotationdbi: Update to 1.38.2. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.2.
 2017-08-02 00:28:32 +02:00
Roel Janssen 0c6494a1db
gnu: r-biomart: Update to 2.32.1. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.1.
 2017-08-02 00:28:16 +02:00
Roel Janssen 1ff74d074e
gnu: r-biocparallel: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.1.
 2017-08-02 00:27:57 +02:00
Roel Janssen 5077bc3e2e
gnu: r-biostrings: Update to 2.44.2. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.2.
 2017-08-02 00:27:35 +02:00
Roel Janssen adf5d0a0bc
gnu: r-delayedarray: Update to 0.2.7. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.2.7.
 2017-08-02 00:27:16 +02:00
Roel Janssen f41150f13d
gnu: r-summarizedexperiment: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.6.3.
 2017-08-02 00:26:55 +02:00
Roel Janssen 26760c80cd
gnu: r-genomicalignments: Update to 1.12.1. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.1.
 2017-08-02 00:26:33 +02:00
Roel Janssen 15afa9bf8f
gnu: r-rtracklayer: Update to 1.36.4. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.4.
 2017-08-02 00:26:00 +02:00
Roel Janssen 8cfaa9ab4e
gnu: r-genomicfeatures: Update to 1.28.4. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.4.
 2017-08-02 00:25:26 +02:00
Roel Janssen 9eb2714625
gnu: r-copywriter: Update to 2.8.1. 
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.1.
 2017-08-02 00:25:00 +02:00
Roel Janssen bfa0d1e773
gnu: r-sva: Update to 3.24.4. 
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.4.
 2017-08-02 00:24:27 +02:00
Roel Janssen 8060a61798
gnu: r-rsqlite: Update to 2.0. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0.
 2017-08-02 00:23:16 +02:00
Roel Janssen 796237a9a4
gnu: Add r-blob. 
* gnu/packages/statistics.scm (r-blob): New variable.
 2017-08-02 00:22:33 +02:00
Roel Janssen aa184803f8
gnu: Add r-pkgconfig. 
* gnu/packages/statistics.scm (r-pkgconfig): New variable.
 2017-08-02 00:21:40 +02:00
Marius Bakke fc8f0631b4
gnu: re2: Update to 2017-08-01. 
* gnu/packages/regex.scm (re2): Update to 2017-08-01.
 2017-08-01 23:37:20 +02:00
Marius Bakke 1926fd2baa
gnu: maim: Update to 5.4.66. 
* gnu/packages/xdisorg.scm (maim): Update to 5.4.66.
 2017-08-01 23:35:31 +02:00
Marius Bakke 7d960db1e3
gnu: slop: Update to 7.3.48. 
* gnu/packages/xdisorg.scm (slop): Update to 7.3.48.
 2017-08-01 23:35:03 +02:00
Marius Bakke b73e49f595
gnu: git: Update to 2.13.4. 
* gnu/packages/version-control.scm (git): Update to 2.13.4.
 2017-08-01 23:34:41 +02:00
Roel Janssen 14fce399cc
gnu: r-foreign: Update hash after upstream tarball change. 
* gnu/packages/statistics.scm (r-foreign):  Update hash.  The only difference
  in the tarball is the metadata.  The contents are identical.
 2017-08-01 23:07:58 +02:00
Roel Janssen cdf124c607
gnu: r-foreign: Remove duplicate recipe. 
* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe.
 2017-08-01 23:06:02 +02:00
Leo Famulari d0386db493
gnu: rapidjson: Update to 1.1.0. 
* gnu/packages/web.scm (rapidjson): Update to 1.1.0.
[source]: Remove snippet.
 2017-08-01 14:42:44 -04:00
ng0 f2e1271809
gnu: Add pidentd. 
* gnu/packages/networking.scm (pidentd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-08-01 20:57:51 +03:00
Kei Kebreau 89c9445aa2
gnu: hyperrogue: Update to 10.0e. 
* gnu/packages/games.scm (hyperrogue): Update to 10.0e.
[arguments]: Adjust accordingly.
 2017-08-01 12:14:54 -04:00
Efraim Flashner d931a4bbeb
gnu: metabat: Limit to x86_64 and i686 only. 
* gnu/packages/bioinformatics.scm (metabat)[supported-systems]: New field.
 2017-08-01 17:28:35 +03:00
Kyle Meyer 4bfdf034e2
gnu: Add emacs-yasnippet-snippets. 
* gnu/packages/emacs.scm (emacs-yasnippet-snippets): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-01 15:33:07 +02:00
Kyle Meyer 1f0d47059d
gnu: emacs-yasnippet: Upgrade to 0.12.0. 
* gnu/packages/emacs.scm (emacs-yasnippet): Upgrade to 0.12.0.
[source]: Remove an uninstalled directory from yas-snippet-dirs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-01 15:32:59 +02:00
Ludovic Courtès 04b6d6f7f7
gnu: guile-ssh: Update to 0.11.2. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2.
[source]: Remove 'patches', 'modules', and 'snippet'.
* gnu/packages/patches/guile-ssh-channel-finalization.patch,
gnu/packages/patches/guile-ssh-double-free.patch,
gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2017-08-01 15:32:07 +02:00
Adonay Felipe Nogueira 12235a124f
gnu: artanis: Unbundled guile-json and version according to documentation. 
* gnu/packages/guile.scm (artanis): Unbundled guile-json and version
according to documentation.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-01 15:32:07 +02:00
Muriithi Frederick Muriuki 269504a797
gnu: python-pbr-minimal: Update to 3.0.1 
* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1
[source]: Update hash and remove patch.
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-08-01 15:21:52 +03:00
Leo Famulari 3d0fbd3c2f
gnu: libgit2: Enable SHA-1 collision detection. 
* gnu/packages/version-control.scm (libgit2)[arguments]: Enable '-DUSE_SHA1DC'
in #:configure-flags.
 2017-08-01 01:02:53 -04:00
Ben Woodcroft befb2c0e6e
gnu: ruby-bio-commandeer: Update to 0.2.0. 
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.2.0.
 2017-08-01 14:09:07 +10:00
Ludovic Courtès e1ecc8908e
gnu: libmicrohttpd: Update to 0.9.55. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.55.
[arguments]: Add 'add-missing-LDFLAGS' phase.
 2017-07-31 22:51:34 +02:00
Ludovic Courtès a6b5af0cff
gnu: xf86-video-intel: Update snapshot. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2100efa.
Introduce 'revision' variable.
 2017-07-31 22:10:34 +02:00
Ludovic Courtès f0732ee485
gnu: guile-bytestructures: Install .go files to lib/guile/X.Y. 
* gnu/packages/guile.scm (guile-bytestructures)[arguments]: Install .go
files to OBJECT-DIR, defined as OUT/lib/guile/X.Y/site-ccache.
 2017-07-31 17:36:24 +02:00
ng0 54727850c3
gnu: tor: Remove '--enable-expensive-hardening' option. 
* gnu/packages/tor.scm (tor)[arguments]: Remove '--enable-expensive-hardening' option.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-31 17:06:45 +02:00
Peter Mikkelsen ee217402f7
gnu: erlang: Update to 20.0. 
* gnu/packages/erlang.scm (erlang): Update to 20.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-31 17:02:36 +02:00
Ludovic Courtès c27e02bf6b
gnu: network-manager: Add dependency on Newt. 
Suggested by Mark H Weaver.

* gnu/packages/gnome.scm (network-manager)[inputs]: Add NEWT.
 2017-07-31 15:23:06 +02:00