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Author SHA1 Message Date
Ben Woodcroft efb94fda64
gnu: ruby-nokogiri: Update to 1.8.0. 
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.8.0.
 2017-07-28 20:18:52 +10:00
Ben Woodcroft 26f4a37736
gnu: ruby-mini-portile2: Update to 2.2.0. 
* gnu/packages/ruby.scm (ruby-mini-portile2): Update to 2.2.0.
 2017-07-28 20:18:51 +10:00
Tobias Geerinckx-Rice 0f6cf5a61c
gnu: nautilus: Update to 3.24.2.1. 
* gnu/packages/gnome.scm (nautilus): Update to 3.24.2.1.
 2017-07-28 01:02:40 +02:00
Tobias Geerinckx-Rice 73fe4552aa
gnu: gptfdisk: Update description. 
* gnu/packages/disk.scm (gptfdisk): Remove outdated statement and use @dfn.
 2017-07-28 01:02:39 +02:00
Tobias Geerinckx-Rice 0193e3be53
gnu: goffice: Update to 3.24.2.1. 
* gnu/packages/gnome.scm (goffice): Update to 3.24.2.1.
 2017-07-28 01:02:39 +02:00
Tobias Geerinckx-Rice c8fc9a379b
gnu: shotwell: Update to 0.26.2. 
* gnu/packages/gnome.scm (shotwell): Update to 0.26.2.
 2017-07-28 01:02:39 +02:00
Marius Bakke fb2715720a
gnu: whois: Update to 5.2.17. 
* gnu/packages/networking.scm (whois): Update to 5.2.17.
 2017-07-28 00:07:45 +02:00
Marius Bakke bd51224936
gnu: nss, nss-certs: Update to 3.32. 
This release includes minor code changes and many certificate updates:
<https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS/NSS_3.32_release_notes>

* gnu/packages/certs.scm (nss-certs): Update to 3.32.
* gnu/packages/gnuzilla.scm (nss): Update to 3.32.
[arguments]: Prevent another test file from being installed.
* gnu/packages/patches/nss-pkgconfig.patch: Adjust.
 2017-07-28 00:07:28 +02:00
Marius Bakke 6571754462
gnu: nspr: Update to 4.16. 
* gnu/packages/gnuzilla.scm (nspr): Update to 4.16.
 2017-07-27 22:15:27 +02:00
Marius Bakke 90335ccea6
gnu: python-cryptography: Update to 2.0.2. 
* gnu/packages/python.scm (python-cryptography-vectors, python-cryptography):
Update to 2.0.2.
 2017-07-27 22:15:26 +02:00
Leo Famulari b2973d9634
gnu: subversion: Update to 1.8.18. 
* gnu/packages/version-control.scm (subversion): Update to 1.8.18.
 2017-07-27 14:33:32 -04:00
Leo Famulari 6d31c175b2
gnu: net-tools: Update to 1.60-0.479bb4a7. 
This leaves net-tools-for-tests unchanged.

Fixes <https://bugs.gnu.org/27811>.

* gnu/packages/linux.scm (net-tools): Update to 1.60-0.479bb4a7.
[source]: Use git-fetch.
[inputs]: Remove the Debian patch.
[arguments]: Use modify-phases. Remove the 'patch' phase. Disable
SELINUX and AFBLUETOOTH from build configuration.
 2017-07-27 13:39:42 -04:00
Julian Graham a812aff99c
gnu: gzochi: Update to 0.11.1. 
* gnu/packages/game-development.scm (gzochi): Update to 0.11.1.
  (gzochi)[arguments]: Remove patch for `-Werror', which is no longer
  necessary.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-27 11:47:51 +02:00
Ludovic Courtès f1be6f5b5a
gnu: openmpi: Add "static" output. 
* gnu/packages/mpi.scm (openmpi)[outputs]: New field.
[arguments]: Add 'move-static-libraries' phase.
 2017-07-27 11:47:50 +02:00
Ricardo Wurmus 8f2c410fc5
gnu: r-preprocesscore: Update to 1.38.1. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.1.
 2017-07-27 10:04:09 +02:00
Ricardo Wurmus 620b0468e9
gnu: Add cowsay. 
* gnu/packages/games.scm (cowsay): New variable.
 2017-07-27 10:03:37 +02:00
Tobias Geerinckx-Rice 56ab0f0c6d
gnu: nnn: Update to 1.3. 
* gnu/packages/admin.scm (nnn): Update to 1.3.
 2017-07-27 05:03:33 +02:00
Dave Love efcacc17c7
gnu: openmpi: Enable SGE support. 
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-sge" in
 #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
ng0 217ce5702c
gnu: mg: Add new phase to find 'diff'. 
* gnu/packages/text-editors.scm (mg)[phases]: Add new 'correct-location-of-difftool'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
ng0 bcd1544dd2
gnu: mg: Fetch source via HTTPS. 
* gnu/packages/text-editors.scm (mg)[source]: Use HTTPS.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
ng0 1a5a8afea0
gnu: mg: Update to 20170401. 
* gnu/packages/text-editors.scm (mg): Update to 20170401.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
Danny Milosavljevic 9ea61b1c6f
gnu: Add python-flask-principal. 
* gnu/packages/python.scm (python-flask-principal, python2-flask-principal):
New variables.
 2017-07-26 21:52:30 +02:00
Tobias Geerinckx-Rice 9d9fc39946
gnu: Add lziprecover. 
* gnu/packages/compression.scm (lziprecover): New variable.
 2017-07-26 19:38:59 +02:00
Leo Famulari f96dbf6b70
gnu: net-tools: Add a test-only variant and use it for GnuTLS. 
* gnu/packages/linux.scm (net-tools-for-tests): Add hidden net-tools variant.
* gnu/packages/tls.scm (gnutls)[native-inputs]: Use net-tools-for-tests instead
of net-tools.
 2017-07-26 12:06:52 -04:00
Ludovic Courtès bcd757fdb4
gnu: mg: Move to (gnu packages text-editors). 
* gnu/packages/mg.scm: Remove.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/text-editors.scm (mg): New variable.
 2017-07-26 11:11:11 +02:00
Efraim Flashner 1cae188e61
gnu: glpk: Update to 4.63. 
* gnu/packages/maths.scm (glpk): Update to 4.63.
 2017-07-26 10:15:54 +03:00
Danny Milosavljevic 4f038621a5
gnu: leafpad: Use glib-or-gtk build-system. 
* gnu/packages/text-editors.scm (leafpad): Use glib-or-gtk build-system.
 2017-07-26 08:19:47 +02:00
Danny Milosavljevic ff4192ff57
gnu: claws-mail: Disable (duplicate) Gtk+ icon cache generation. 
* gnu/packages/mail.scm (claws-mail)[arguments]: Add make-flags to disable
Gtk+ icon cache generation.
 2017-07-26 08:18:46 +02:00
Kei Kebreau 8ad40a69d1
gnu: evince: Update to 3.24.1. 
* gnu/packages/gnome.scm (evince): Update to 3.24.1.
[source]: Remove obsolete patch.
* gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-25 18:41:05 -04:00
Tobias Geerinckx-Rice 980fe414c1
gnu: hplip: Update to 3.17.7. 
* gnu/packages/cups.scm (hplip): Update to 3.17.7.
 2017-07-25 23:59:21 +02:00
Tobias Geerinckx-Rice ae03ee4274
gnu: fdisk: Update to 2.0.0a1. 
* gnu/packages/disk.scm (fdisk): Update to 2.0.0a1.
[arguments]: Make sure the build finds its own headers.
 2017-07-25 23:58:34 +02:00
Tobias Geerinckx-Rice aa588d8a38
gnu: sdparm: Update to 1.10. 
* gnu/packages/disk.scm (sdparm): Update to 1.10.
 2017-07-25 23:58:34 +02:00
Oleg Pykhalov af79852c99
gnu: neofetch: Fix search path. 
* gnu/packages/admin.scm (neofetch): Fix "No such file or directory" for distro logo.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-25 23:07:37 +02:00
Marius Bakke 16fb1e79ca
gnu: chess: Update to 6.2.5. 
* gnu/packages/games.scm (chess): Update to 6.2.5.
 2017-07-25 23:07:37 +02:00
Marius Bakke 4eacb47de0
gnu: feh: Update to 2.19.1. 
* gnu/packages/image-viewers.scm (feh): Update to 2.19.1.
 2017-07-25 22:58:43 +02:00
Marius Bakke 5f02ea1a6d
gnu: notmuch: Update to 0.25. 
* gnu/packages/mail.scm (notmuch): Update to 0.25.
 2017-07-25 22:58:43 +02:00
Kei Kebreau 4fdab17371
gnu: python2-urwid: Actually build urwid for Python 2. 
* gnu/packages/python.scm (python2-urwid)[arguments]: Add #:python.
 2017-07-25 15:29:29 -04:00
Leo Famulari e9f468dfcd
gnu: tcpdump: Update to 4.9.1 [fixes CVE-2017-11108]. 
* gnu/packages/admin.scm (tcpdump): Update to 4.9.1.
 2017-07-25 15:25:44 -04:00
Feng Shu 90062885b7
gnu: you-get: Update to 0.4.803. 
* gnu/packages/video.scm (you-get): Update to 0.4.803.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-25 14:44:19 -04:00
Kei Kebreau c7db7b86ce
gnu: perl-dbd-mysql: Fix CVE-2017-10788. 
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it.
 2017-07-25 14:11:20 -04:00
Dave Love bb0f6d7526
gnu: openmpi: Description mentions MPI 3.0. 
* gnu/packages/mpi.scm (openmpi): It's MPI 3, not MPI 2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-25 18:10:08 +02:00
Dave Love 1f9bff4152
gnu: openmpi: Update to 1.10.7. 
* gnu/packages/mpi.scm (openmpi): Update to 1.10.7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-25 18:09:27 +02:00
Ludovic Courtès 70bc608503
gnu: Add guile2.0-git. 
* gnu/packages/guile.scm (guile2.0-git): New variable.
 2017-07-25 17:46:17 +02:00
Ludovic Courtès 726ecfeb3a
gnu: Add guile2.0-bytestructures. 
* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-bytestructures)[source]: Use it.
[arguments]: Unpack the source.
[native-inputs]: New field.
(guile2.0-bytestructures): New variable.
 2017-07-25 17:46:17 +02:00
Kei Kebreau 0093b1262b
gnu: maxima: Ensure binutils are available at runtime. 
* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
 2017-07-25 07:58:55 -04:00
Kei Kebreau 6b2eafaaa8
Revert "gnu: maxima: Ensure gcc is available at runtime." 
This reverts commit f2fa86cc82.
Commit 5ea8dbf0c9 fixes the underlying
issue in GNU Common Lisp.
 2017-07-25 07:58:46 -04:00
Kei Kebreau 5ea8dbf0c9
gnu: gcl: Ensure gcc and binutils are available at runtime. 
* gnu/packages/lisp.scm (gcl)[arguments]: Add -fgnu89-inline to CFLAGS.
Add GCC path to make-flags. Modify 'pre-conf' phase. Add 'wrap' phase.
 2017-07-25 07:58:06 -04:00
Mark H Weaver ebc9f7050c
gnu: webkitgtk: Update to 2.16.6 [security fixes]. 
Includes fixes for CVE-2017-7039, CVE-2017-7018, CVE-2017-7030, CVE-2017-7037,
CVE-2017-7034, CVE-2017-7055, CVE-2017-7056, CVE-2017-7064, CVE-2017-7061,
CVE-2017-7048, and CVE-2017-7046.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.6.
 2017-07-25 07:32:25 -04:00
Leo Famulari 5b4a6ba044
gnu: xterm: Update to 330. 
* gnu/packages/xorg.scm (xterm): Update to 330.
 2017-07-24 22:54:18 -04:00
Leo Famulari 0e8fed86d8
gnu: dialog: Update to 1.3-20170509. 
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20170509.
 2017-07-24 22:54:15 -04:00
Leo Famulari fce8285e4b
gnu: opus: Update to 1.2.1. 
* gnu/packages/xiph.scm (opus): Update to 1.2.1.
[source]: Use new source URL.
 2017-07-24 17:37:05 -04:00
Christopher Baines d61a894bfa
gnu: gnome: Add deja-dup. 
* gnu/packages/gnome.scm (deja-dup): New variable.
* gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.
 2017-07-24 20:05:49 +01:00
Ludovic Courtès c022e11187
gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix): Update to f1ddfe4.
 2017-07-24 12:25:08 +02:00
Ludovic Courtès f1ddfe4f14
gnu: python-flaky: Fix Texinfo markup in description. 
* gnu/packages/python.scm (python-flaky)[description]: Escape "@".
 2017-07-24 12:05:53 +02:00
Leo Famulari 2472f7a8f1
gnu: isc-dhcp: Update bundled bind to 9.9.10-P3. 
This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.9.10-P2, commit ecb232bdfc.

See 'CHANGELOG' in the source distribution for more information.

* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P3.
 2017-07-23 19:05:37 -04:00
Leo Famulari 5391c6c9d2
gnu: bind: Update to 9.11.1-P3. 
This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.11.1-P2, commit faa1369e3c.

See 'CHANGELOG' in the source distribution for more information.

* gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P3.
 2017-07-23 19:05:37 -04:00
Mark H Weaver c67d80563f
gnu: ncurses/gpm: Move to (gnu packages ncurses). 
This is needed to avoid compilation problems caused by the cyclic dependency
between (gnu packages ncurses) and (gnu packages linux).

* gnu/packages/linux.scm (ncurses/gpm): Move to ...
* gnu/packages/ncurses.scm (ncurses/gpm): ... here.  Fix misleading
indentation.  Add (gnu packages linux) to the module imports.
 2017-07-23 17:04:51 -04:00
Efraim Flashner fd900d68a5
gnu: Add support for aarch64's compiled kernel. 
* gnu/packages/linux.scm (linux-libre)[arguments]: Add to the regex to
find and install the aarch64-linux kernel.
* gnu/system.scm (system-linux-image-file-name): Add entry for aarch64.
 2017-07-23 23:33:18 +03:00
Efraim Flashner 826adfdb37
gnu: Add xf86-video-freedreno. 
* gnu/packages/xorg.scm (xf86-video-freedreno): New variable.
 2017-07-23 23:33:17 +03:00
Efraim Flashner 4adeb3f6e6
gnu: Add u-boot-odroid-c2. 
* gnu/packages/bootloaders.scm (u-boot-odroid-c2): New variable.
 2017-07-23 23:33:16 +03:00
Efraim Flashner 1313628339
gnu: u-boot: Update to 2017.07. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.07.
 2017-07-23 23:33:13 +03:00
Marius Bakke 846cb73865
gnu: tevent: Update to 0.9.33. 
* gnu/packages/samba.scm (tevent): Update to 0.9.33.
 2017-07-23 22:01:29 +02:00
Marius Bakke 85a5800e52
gnu: talloc: Update to 2.1.10. 
* gnu/packages/samba.scm (talloc): Update to 2.1.10.
 2017-07-23 22:01:29 +02:00
Marius Bakke fbed150133
gnu: ldb: Update to 1.1.31. 
* gnu/packages/samba.scm (ldb): Update to 1.1.31.
[native-inputs]: Add CMOCKA.
 2017-07-23 22:01:28 +02:00
Marius Bakke 17c3f1fb67
gnu: cmocka: Update to 1.1.1. 
* gnu/packages/check.scm (cmocka): Update to 1.1.1.
 2017-07-23 22:01:28 +02:00
Marius Bakke 38bb9df150
gnu: tdb: Update to 1.3.14. 
* gnu/packages/databases.scm (tdb): Update to 1.3.14.
 2017-07-23 22:01:28 +02:00
Marius Bakke 09efef3384
gnu: python-scipy: Update to 0.19.1. 
* gnu/packages/python.scm (python-scipy): Update to 0.19.1.
[source]: Use 'pypi-uri'.
 2017-07-23 22:01:28 +02:00
Marius Bakke 71d20587a5
gnu: python-matplotlib: Update to 2.0.2. 
* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2.
[source]: Use 'pypi-uri'.
 2017-07-23 22:01:28 +02:00
Marius Bakke 9e5ee6b60c
gnu: python-pyparsing: Update to 2.2.0. 
* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to
2.2.0.
 2017-07-23 22:01:27 +02:00
Marius Bakke 007176e710
gnu: python-pyparsing: Use 'modify-phases' syntax. 
* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use
'modify-phases'.
 2017-07-23 22:01:27 +02:00
Oleg Pykhalov 6e864d0081
gnu: Add xmobar. 
gnu/packages/wm.scm (xmobar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-23 15:29:36 -04:00
Efraim Flashner 8f155e3cff
gnu: bash-completion: Update to 2.7. 
* gnu/packages/bash.scm (bash-completion): Update to 2.7.
 2017-07-23 11:05:54 +03:00
ng0 9478c05955
gnu: getmail: Update to 5.1. 
* gnu/packages/mail.scm (getmail): Update to 5.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-22 20:34:47 -04:00
Ben Woodcroft f3f68a442c
gnu: metabat: Update to 2.11.1. 
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-07-23 10:29:36 +10:00
Ben Woodcroft 897ab082b2
gnu: python-plastid: Update to 0.4.8. 
* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8.
 2017-07-23 10:29:36 +10:00
Ben Woodcroft 0620387a59
gnu: bcftools: Update to 1.5. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag.  Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-23 10:29:36 +10:00
Ben Woodcroft 63fa0ffcd4
gnu: samtools: Update to 1.5. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.5.
 2017-07-23 10:29:36 +10:00
Ben Woodcroft 4fb6d1280e
gnu: htslib: Update to 1.5. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.5.
 2017-07-23 10:29:35 +10:00
Ben Woodcroft 60739965da
gnu: python-pysam: Update to 0.11.2.2. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2.
 2017-07-23 10:29:35 +10:00
Ben Woodcroft bca2c57658
gnu: bamm: Use htslib-1.3. 
* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
 2017-07-23 10:29:35 +10:00
Ben Woodcroft 98593f9f51
gnu: bcftools: Update to 1.4.1. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch.  Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-07-23 10:29:35 +10:00
Ben Woodcroft 4ab1644049
gnu: samtools: Update to 1.4.1. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
 2017-07-23 10:29:34 +10:00
Ben Woodcroft a9e4a1e641
gnu: htslib: Update to 1.4.1. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1.
[inputs]: Add curl, openssl.
 2017-07-23 10:29:34 +10:00
Ben Woodcroft c842d42593
gnu: samtools: Use "modify-phases" syntax. 
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases"
syntax.
 2017-07-23 10:29:34 +10:00
ng0 c62d1a6e6c
gnu: bspwm: Update to 0.9.3. 
* gnu/packages/wm.scm (bspwm): Update to 0.9.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-22 20:17:46 -04:00
ng0 7e3c977da6
gnu: Add oksh. 
* gnu/packages/shells.scm (oksh): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-22 20:15:21 -04:00
Ryan Moe 36378bd57e
gnu: quassel: Enable TLS. 
* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-22 20:04:53 -04:00
Tobias Geerinckx-Rice e745221408
gnu: youtube-dl: Update to 2017.07.23. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.23.
 2017-07-23 01:59:32 +02:00
Tobias Geerinckx-Rice 4b8b245b83
gnu: mosh: Update to 1.3.2. 
* gnu/packages/ssh.scm (mosh): Update to 1.3.2.
 2017-07-23 01:27:29 +02:00
Ricardo Wurmus a68a83f015
gnu: Add openmolar. 
* gnu/packages/medical.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: Quiliro <quiliro@fsfla.org>
 2017-07-22 23:48:58 +02:00
Ricardo Wurmus 2456153adc
gnu: Add python-pyqt+qscintilla. 
* gnu/packages/qt.scm (python-pyqt+qscintilla): New variable.
 2017-07-22 23:48:58 +02:00
Ricardo Wurmus 06d04dbcfc
gnu: Add python-qscintilla. 
* gnu/packages/qt.scm (python-qscintilla): New variable.

Co-authored-by: Quiliro <quiliro@fsfla.org>
 2017-07-22 23:48:57 +02:00
Ricardo Wurmus 3befd0a97c
gnu: Add qscintilla. 
* gnu/packages/qt.scm (qscintilla): New variable.

Co-authored-by: Quiliro <quiliro@fsfla.org>
 2017-07-22 23:48:57 +02:00
Ricardo Wurmus 056468dc5f
gnu: Add cran module. 
* gnu/packages/cran.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
 2017-07-22 23:48:57 +02:00
Mark H Weaver 30f8349efb
gnu: linux-libre: Update to 4.12.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.3.
(%linux-libre-hash): Update hash.
 2017-07-22 14:46:00 -04:00
Mark H Weaver d422eac54e
gnu: linux-libre@4.9: Update to 4.9.39. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.39.
 2017-07-22 14:45:06 -04:00
Mark H Weaver f97c67a275
gnu: linux-libre@4.4: Update to 4.4.78. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.78.
 2017-07-22 14:44:24 -04:00
Ricardo Wurmus 3a4b0b126b
gnu: r-s4vectors: Update to 0.14.3. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.3.
 2017-07-22 17:31:19 +02:00
Ricardo Wurmus a35a1e9c13
gnu: r-genomicranges: Update to 1.28.4. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.4.
 2017-07-22 17:22:07 +02:00
Marius Bakke aa51da7eef
gnu: Remove python-fake-factory leftovers. 
This is a followup to c799eb2eb8.

* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-22 15:07:45 +02:00
Marius Bakke c799eb2eb8
gnu: Remove python-fake-factory. 
Superseded by python-faker since ce7911ddae.

* gnu/packages/python.scm (python-fake-factory, python2-fake-factory):
Remove variables.
 2017-07-22 14:31:28 +02:00
Marius Bakke 2580c2f07f
gnu: python-pyopenssl: Update to 17.2.0. 
* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0.
[native-inputs]: Add PYTHON-FLAKY.
[source](patches): Remove.
 2017-07-22 14:31:28 +02:00
Marius Bakke 4e52739c61
gnu: Add python-flaky. 
* gnu/packages/python.scm (python-flaky, python2-flaky): New variables.
 2017-07-22 14:31:27 +02:00
Marius Bakke 6027cb8a82
gnu: maim: Update to 5.4.64. 
* gnu/packages/xdisorg.scm (maim): Update to 5.4.64.
 2017-07-22 14:31:27 +02:00
Marius Bakke eb2b5f9d03
gnu: slop: Update to 6.3.47. 
* gnu/packages/xdisorg.scm (slop): Update to 6.3.47.
[inputs]: Add GLEW.
 2017-07-22 14:31:27 +02:00
Tobias Geerinckx-Rice 0cd95cefe0
gnu: parallel: Update to 20170722. 
* gnu/packages/parallel.scm (parallel): Update to 20170722.
 2017-07-22 13:47:26 +02:00
Tobias Geerinckx-Rice bc35c9d318
gnu: font-gnu-unifont: Update to 10.0.05. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.05.
 2017-07-22 13:47:26 +02:00
Tobias Geerinckx-Rice f7975a3bde
gnu: nano: Update to 2.8.6. 
* gnu/packages/nano.scm (nano): Update to 2.8.6.
 2017-07-22 13:47:25 +02:00
Tobias Geerinckx-Rice f03d8d67a5
gnu: acct: Update to 6.6.4. 
* gnu/packages/acct.scm (acct): Update to 6.6.4.
 2017-07-22 13:47:25 +02:00
Muriithi Frederick Muriuki 84fcb58050
gnu: Add conda. 
* gnu/packages/package-management.scm (conda): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-07-22 12:26:30 +02:00
Muriithi Frederick Muriuki 4bc08b6e79
gnu: Add python-conda. 
* gnu/packages/package-management.scm (python-conda, python2-conda): New
variables.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-07-22 12:26:29 +02:00
Muriithi Frederick Muriuki 513d35f191
gnu: Add python-anaconda-client. 
* gnu/packages/package-management.scm (python-anaconda-client,
python2-anaconda-client): New variables.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-07-22 12:26:29 +02:00
Muriithi Frederick Muriuki 1f84ff5135
gnu: Add python-clyent. 
* gnu/packages/python.scm (python-clyent, python2-clyent): New variables.
 2017-07-22 12:26:29 +02:00
Muriithi Frederick Muriuki 3fee003950
gnu: Update python-pytz to 2017.2. 
* gnu/packages/python.scm (python-pytz, python2-pytz): Update to 2017.2.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-07-22 12:26:29 +02:00
Tobias Geerinckx-Rice de469015c4
gnu: man-pages: Update to 4.12. 
* gnu/packages/man.scm (man-pages): Update to 4.12.
 2017-07-22 12:18:58 +02:00
Eric Bavier 1ffe41711b
gnu: tint2: Update to 0.14.6. 
* gnu/packages/xdisorg.scm (tint2): Update to 0.14.6.
 2017-07-21 22:41:24 -05:00
Leo Famulari e9185cbac6
gnu: icedtea@3: Update to 3.5.0 [security fixes]. 
Fixes CVE-2017-{10053,10067,10074,10074,10078,10081,10087,10089,10090,10096,
10101,10102,10107,10108,10109,10110,10111,10115,10116,10118,10135,10176,10193,
10198}.

* gnu/packages/java.scm (icedtea-8): Update to 3.5.0.
 2017-07-21 17:30:08 -04:00
Leo Famulari 3c14378381
gnu: vim: Update to 8.0.0727 [fixes CVE-2017-11109]. 
* gnu/packages/vim.scm (vim): Update to 8.0.0727.
(vim-full)[source]: Add field and hold back at version 8.0.0600.
 2017-07-21 15:20:23 -04:00
Leo Famulari 6f226c078c
gnu: mysql: Update to 5.7.19. 
* gnu/packages/databases.scm (mysql): Update to 5.7.19.
 2017-07-21 14:50:24 -04:00
Tobias Geerinckx-Rice 0cf9f9b1e3
gnu: libpsl: Update to 0.18.0. 
* gnu/packages/web.scm (libpsl): Update to 0.18.0.
[native-inputs]: Add pkg-config.
[inputs]: Replace icu4c with libidn2; add libunistring.
 2017-07-21 12:24:47 +02:00
Leo Famulari cd4f35c379
gnu: borg: Update to 1.0.11. 
* gnu/packages/backup.scm (borg): Update to 1.0.11.
 2017-07-21 01:23:25 -04:00
Leo Famulari f8fabfc99f
gnu: bitcoin-core: Actually build the graphical client. 
* gnu/packages/finance.scm (bitcoin-core)[inputs]: Replace qtbase with qt.
 2017-07-20 18:42:28 -04:00
Alex Vong 81c35029d4
gnu: heimdal: Fix CVE-2017-{6594,11103}. 
* gnu/packages/patches/heimdal-CVE-2017-6594.patch,
gnu/packages/patches/heimdal-CVE-2017-11103.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/kerberos.scm (heimdal)[source]: Use them.
 2017-07-20 15:33:53 -04:00
Arun Isaac cfd6a3b1ee
gnu: Add bmon. 
* gnu/packages/networking.scm (bmon): New variable.
 2017-07-20 23:19:24 +05:30
Ricardo Wurmus fb5dfa86b1
gnu: texlive-latex-mdwtools: Fix syntax error in description. 
* gnu/packages/tex.scm (texlive-latex-mdwtools)[description]: Fix texinfo
syntax error.
 2017-07-20 16:40:29 +02:00
Ricardo Wurmus 09acbb02c7
gnu: texlive-latex-environ: Fix invalid texinfo markup. 
* gnu/packages/tex.scm (texlive-latex-environ)[description]: Fix texinfo
syntax errors.
 2017-07-20 16:36:31 +02:00
Arun Isaac 0daa1d646a
gnu: Add mksh. 
* gnu/packages/shells.scm (mksh): New variable.
 2017-07-20 19:55:22 +05:30
Leo Famulari 8582e03ae5
gnu: Remove a left-over patch. 
This is a followup to commit 426b0b898f.

* gnu/packages/patches/pcre-CVE-2017-7186.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-20 09:00:36 -04:00
Leo Famulari 426b0b898f
gnu: pcre: Update replacement to 8.41 [fixes CVE-2017-{7244,7245,7246}]. 
* gnu/packages/pcre.scm (pcre)[replacement]: Update to pcre-8.41.
(pcre/fixed): Replace with ...
(pcre-8.41): ... new variable.
 2017-07-20 08:26:40 -04:00
Oleg Pykhalov c97cef0a91
gnu: Add premake4. 
* gnu/packages/build-tools.scm (premake4): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-20 11:57:13 +02:00
Gábor Boskovits 742242a5be
gnu: Add java-commons-cli@1.2. 
* gnu/packages/java.scm(java-commons-cli-1.2): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-20 11:57:12 +02:00
Theodoros Foradis 6158309450
gnu: Update g-wrap to use guile-2.2. 
* gnu/packages/guile.scm (g-wrap): [propagated-inputs]: Use guile-2.2.
[arguments]: Add "--disable-Werror" to configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-20 11:57:12 +02:00
Ricardo Wurmus ab466d79e1
gnu: Add eolie. 
* gnu/packages/gnome.scm (eolie): New variable.
 2017-07-20 08:41:28 +02:00
Tobias Geerinckx-Rice 0762a1dbf4
gnu: perl-html-template: Update to 2.97. 
* gnu/packages/web.scm (perl-html-template): Update to 2.97.
 2017-07-20 02:10:55 +02:00
Tobias Geerinckx-Rice 1a34ca0e8f
gnu: openh264: Update to 1.7.0. 
* gnu/packages/video.scm (openh264): Update to 1.7.0.
 2017-07-20 01:36:51 +02:00
Tobias Geerinckx-Rice ba4e15ae85
gnu: gnome-mpv: Update to 0.12. 
* gnu/packages/video.scm (gnome-mpv): Update to 0.12.
 2017-07-20 01:36:50 +02:00
Jonathan Brielmaier 29ac89a635
gnu: Add 0xffff. 
* gnu/packages/flashing-tools.scm (0xffff): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-20 00:54:52 +02:00
Jonathan Brielmaier 05c8851695
gnu: Add libusb@0.1. 
* gnu/packages/libusb.scm (libusb-0.1): New variable.
* gnu/packages/patches/libusb-0.1-disable-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-20 00:54:52 +02:00
Maxim Cournoyer 7c0d4c3a6b
gnu: lapack: Fix hash of release 3.7.1 
Apparently the release was modified (cleaned-up) in-place. An issue was opened
at https://github.com/Reference-LAPACK/lapack-release/issues/4.

* gnu/packages/maths.scm (lapack): Fix sha256 hash.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-20 00:54:51 +02:00
Tobias Geerinckx-Rice dc05f6523e
gnu: qsyncthingtray: Update to 0.5.8. 
* gnu/packages/sync.scm (qsyncthingtray): Update to 0.5.8.
 2017-07-20 00:35:02 +02:00
Tobias Geerinckx-Rice 53cea7594c
gnu: dub: Update to 1.4.0. 
* gnu/packages/ldc.scm (dub): Update to 1.4.0.
 2017-07-20 00:34:57 +02:00
Ricardo Wurmus e7304ab18b
gnu: Add python-sphinx-1.6. 
* gnu/packages/python.scm (python-sphinx-1.6): New variable.
 2017-07-19 22:27:03 +02:00
Ricardo Wurmus 5f94ec913f
gnu: Add python-sphinxcontrib-websupport. 
* gnu/packages/python.scm (python-sphinxcontrib-websupport): New variable.
 2017-07-19 22:27:02 +02:00
Ricardo Wurmus 423d2136f0
gnu: Add python-xapian-bindings. 
* gnu/packages/search.scm (python-xapian-bindings): New variable.
 2017-07-19 22:27:02 +02:00
Leo Famulari 6d5deda16d
gnu: graphicsmagick: Update to 1.3.26. 
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.26.
[source]: Use url-fetch and add SourceForge URL. Remove snippet.
 2017-07-19 13:56:43 -04:00
Leo Famulari 8016393eab
gnu: mpv: Update to 0.26.0. 
* gnu/packages/video.scm (mpv): Update to 0.26.0.
 2017-07-19 10:33:31 -04:00
Ricardo Wurmus fd40857938
gnu: r-bsgenome-hsapiens-ucsc-hg19: Update hash. 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Update hash because the tarball changed in place.
 2017-07-19 14:39:37 +02:00
Ricardo Wurmus 1fb9b6782b
gnu: snakemake: Update to 3.13.3. 
* gnu/packages/python.scm (snakemake): Update to 3.13.3.
 2017-07-19 14:39:37 +02:00
Ricardo Wurmus 688fbf572e
gnu: guitarix: Update to 0.35.5. 
* gnu/packages/audio.scm (guitarix): Update to 0.35.5.
 2017-07-19 14:39:37 +02:00
Efraim Flashner 2324541bd0
gnu: sortmerna: Limit support to x86_64 and i686 only. 
* gnu/packages/bioinformatics.scm (sortmerna)[supported-systems]: New field.
 2017-07-19 14:37:47 +03:00