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47217 Commits

Author SHA1 Message Date
Ludovic Courtès d34e9114e6
doc: Explain that "guix import" and "guix refresh" may need GnuPG. 
Fixes <https://bugs.gnu.org/36051>.
Reported by Jesse Gibbons <jgibbons2357@gmail.com>.

* doc/guix.texi (Invoking guix import, Invoking guix refresh): Mention
that GnuPG must be installed.
 2019-09-02 15:25:00 +02:00
Efraim Flashner eb98d5a83c
gnu: Add rust-heapsize-plugin, rust-language-tags. 
* gnu/packages/crates-io.scm (rust-heapsize-plugin, rust-language-tags):
New variables.
 2019-09-02 15:54:59 +03:00
Efraim Flashner 7439498366
gnu: Add rust-heapsize-0.3. 
* gnu/packages/crates-io.scm (rust-heapsize-0.3): New variable.
 2019-09-02 15:54:59 +03:00
Efraim Flashner bb41995dc7
gnu: Add rust-owning-ref. 
* gnu/packages/crates-io.scm (rust-owning-ref): New variable.
 2019-09-02 15:54:59 +03:00
Efraim Flashner 44b6397a58
gnu: Add rust-scoped-threadpool. 
* gnu/packages/crates-io.scm (rust-scoped-threadpool): New variable.
 2019-09-02 15:54:58 +03:00
Efraim Flashner 76ee4446fd
gnu: Add rust-redox-syscall, rust-thread-id. 
* gnu/packages/crates-io.scm (rust-redox-syscall, rust-thread-id): New
variables.
 2019-09-02 15:54:58 +03:00
Ricardo Wurmus 8786fec485
import: cran: Only use the git import with what looks like a URL. 
* guix/import/cran.scm (fetch-description): Abort if the argument does not
look like a URL.
 2019-09-02 14:46:04 +02:00
Ricardo Wurmus c7358ac4fc
import: cran: Retry failed git imports on Bioconductor. 
* guix/import/cran.scm (cran->guix-package): Retry failed git imports on
Bioconductor.
 2019-09-02 14:45:17 +02:00
Ricardo Wurmus e107ccea84
gnu: r-ldblock: Update to 1.14.2. 
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.14.2.
[propagated-inputs]: Remove r-erma; add r-ensdb-hsapiens-v75, r-ensembldb, and
r-httr.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus b58b4410e2
gnu: r-mixomics: Update to 6.8.2. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.2.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus 9b275285e9
gnu: r-fgsea: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.10.1.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus 32fcd898f0
gnu: r-seurat: Update to 3.1.0. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.0.
[propagated-inputs]: Add r-leiden, r-rcppannoy, and r-uwot.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus 91addfe05c
gnu: r-rtracklayer: Update to 1.44.3. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.3.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus 2c7a32c2ac
gnu: r-biomart: Update to 2.40.4. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.4.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus e5bc6fce19
gnu: r-annotationdbi: Update to 1.46.1. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.46.1.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus aea33b475b
gnu: r-iranges: Update to 2.18.2. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.2.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus df0f876ee4
gnu: r-pbapply: Update to 1.4-2. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-2.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus 21890aad50
gnu: r-rmarkdown: Update to 1.15. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.15.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus a1a7afc06c
gnu: r-hms: Update to 0.5.1. 
* gnu/packages/statistics.scm (r-hms): Update to 0.5.1.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus b21620bb47
gnu: r-whisker: Update to 0.4. 
* gnu/packages/statistics.scm (r-whisker): Update to 0.4.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus 560f7c949a
gnu: r-chron: Update to 2.3-54. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-54.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus 8e28535d0b
gnu: Add r-leiden. 
* gnu/packages/cran.scm (r-leiden): New variable.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus 8bcd6c953a
gnu: r-umap: Update to 0.2.3.1. 
* gnu/packages/cran.scm (r-umap): Update to 0.2.3.1.
[propagated-inputs]: Add r-openssl.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus 7a90573fd0
gnu: r-enrichr: Update to 2.1. 
* gnu/packages/cran.scm (r-enrichr): Update to 2.1.
 2019-09-02 14:40:56 +02:00
Ricardo Wurmus d64ac92f6c
gnu: r-dalex: Update to 0.4.7. 
* gnu/packages/cran.scm (r-dalex): Update to 0.4.7.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus 466e68b4b2
gnu: r-ggforce: Update to 0.3.1. 
* gnu/packages/cran.scm (r-ggforce): Update to 0.3.1.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus e768b33936
gnu: r-bookdown: Update to 0.13. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.13.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus 87b4381584
gnu: r-tdthap: Update to 1.1-11. 
* gnu/packages/cran.scm (r-tdthap): Update to 1.1-11.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus dfe4c8c405
gnu: r-units: Update to 0.6-4. 
* gnu/packages/cran.scm (r-units): Update to 0.6-4.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus 5feaa77591
gnu: r-wgaim: Update to 2.0-0. 
* gnu/packages/cran.scm (r-wgaim): Update to 2.0-0.
[propagated-inputs]: Remove r-lattice; add r-ggplot2.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus 530404083a
gnu: r-apcluster: Update to 1.4.8. 
* gnu/packages/cran.scm (r-apcluster): Update to 1.4.8.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus 553742fa98
gnu: r-lavaan: Update to 0.6-5. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-5.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus e31eb738f7
gnu: r-ggextra: Update to 0.9. 
* gnu/packages/cran.scm (r-ggextra): Update to 0.9.
[propagated-inputs]: Add r-r6.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus 6c81cc885d
gnu: r-fields: Update to 9.8-6. 
* gnu/packages/cran.scm (r-fields): Update to 9.8-6.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus 4f1c668d31
gnu: r-rgl: Update to 0.100.30. 
* gnu/packages/cran.scm (r-rgl): Update to 0.100.30.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus 0eb284350e
gnu: r-afex: Update to 0.25-1. 
* gnu/packages/cran.scm (r-afex): Update to 0.25-1.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus 084ea3481b
gnu: r-summarytools: Update to 0.9.4. 
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.4.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus 1656a4259b
gnu: r-coin: Update to 1.3-1. 
* gnu/packages/cran.scm (r-coin): Update to 1.3-1.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus a13f81dde7
gnu: r-libcoin: Update to 1.0-5. 
* gnu/packages/cran.scm (r-libcoin): Update to 1.0-5.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus 9c2d978041
gnu: r-magick: Update to 2.2. 
* gnu/packages/cran.scm (r-magick): Update to 2.2.
 2019-09-02 14:40:55 +02:00
Ricardo Wurmus 761f4764f9
gnu: r-raster: Update to 3.0-2. 
* gnu/packages/cran.scm (r-raster): Update to 3.0-2.
 2019-09-02 14:40:54 +02:00
Ricardo Wurmus 59fd6915c8
gnu: r-zip: Update to 2.0.4. 
* gnu/packages/cran.scm (r-zip): Update to 2.0.4.
 2019-09-02 14:40:54 +02:00
Ricardo Wurmus 2586cfd3d7
gnu: r-arules: Update to 1.6-4. 
* gnu/packages/cran.scm (r-arules): Update to 1.6-4.
 2019-09-02 14:40:54 +02:00
Ricardo Wurmus a71460135c
gnu: r-radiant-data: Update to 1.0.6. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.0.6.
 2019-09-02 14:40:54 +02:00
Ricardo Wurmus 9ba8494c26
gnu: r-xfun: Update to 0.9. 
* gnu/packages/cran.scm (r-xfun): Update to 0.9.
 2019-09-02 14:40:54 +02:00
Ricardo Wurmus bd8710b413
gnu: r-seriation: Update to 1.2-8. 
* gnu/packages/cran.scm (r-seriation): Update to 1.2-8.
 2019-09-02 14:40:54 +02:00
Ricardo Wurmus fa859675cc
gnu: r-dtw: Update to 1.21-3. 
* gnu/packages/cran.scm (r-dtw): Update to 1.21-3.
 2019-09-02 14:40:54 +02:00
Ricardo Wurmus b4cf01ecc8
gnu: r-geometry: Update to 0.4.3. 
* gnu/packages/cran.scm (r-geometry): Update to 0.4.3.
 2019-09-02 14:40:54 +02:00
Ricardo Wurmus 403e01e21e
gnu: r-circlize: Update to 0.4.7. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.7.
 2019-09-02 14:40:54 +02:00
Ricardo Wurmus ef93de84ea
gnu: r-pkgbuild: Update to 1.0.5. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.5.
 2019-09-02 14:40:54 +02:00