3bf4280659
Merge branch 'master' into python-build-system
2016-11-29 18:47:16 +01:00
419a8a186f
gnu: Add r-rocr.
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* gnu/packages/statistics.scm (r-rocr): New variable.
2016-11-28 22:43:18 +01:00
0cfe0570f2
gnu: Add r-gplots.
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* gnu/packages/statistics.scm (r-gplots): New variable.
2016-11-28 22:43:18 +01:00
6034cd905e
gnu: Add r-gdata.
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* gnu/packages/statistics.scm (r-gdata): New variable.
2016-11-28 22:43:18 +01:00
1571f90e35
gnu: Add r-gtools.
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* gnu/packages/statistics.scm (r-gtools): New variable.
2016-11-28 22:43:17 +01:00
6335bf1c80
gnu: Add r-sfsmisc.
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* gnu/packages/statistics.scm (r-sfsmisc): New variable.
2016-11-28 22:43:17 +01:00
1bd46f5520
gnu: Add r-fastcluster.
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* gnu/packages/statistics.scm (r-fastcluster): New variable.
2016-11-28 22:43:16 +01:00
c4708783ee
gnu: Add r-preprocesscore.
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* gnu/packages/statistics.scm (r-preprocesscore): New variable.
2016-11-28 22:43:16 +01:00
c9a6671490
gnu: Add r-dynamictreecut.
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* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
2016-11-28 22:43:16 +01:00
e7d16ad161
gnu: Add r-spams.
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* gnu/packages/statistics.scm (r-spams): New variable.
2016-11-28 22:43:16 +01:00
9f5435d963
gnu: Add r-googlesheets.
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* gnu/packages/statistics.scm (r-googlesheets): New variable.
2016-11-28 22:43:16 +01:00
d427e03eee
gnu: Add r-cellranger.
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* gnu/packages/statistics.scm (r-cellranger): New variable.
2016-11-28 22:43:15 +01:00
58612fd2c8
gnu: Add r-rematch.
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* gnu/packages/statistics.scm (r-rematch): New variable.
2016-11-28 22:43:15 +01:00
25b2c47d75
gnu: python-statsmodels: Fix build
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* gnu/packages/statistics.scm (python-statsmodels): [check] set
PYTHONPATH prior to running tests.
2016-11-15 22:31:33 +01:00
b41a05ce49
gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs).
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Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".
* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
configure-flags. (python-pillow) remove phase
"disable-egg-generation". (python-libarchive-c) Remove patching
setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
"prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
"disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
2016-11-15 22:31:02 +01:00
5c31f4aa7c
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)
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This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.
Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
python-twobitreader, python2-twobitreader,
python-plastid, python2-plastid,
python2-pybigwig,
python2-screed,
sra-tools): No longer "inherit" Python 2 packages
inheriting from a Python 3 package if the sole reason for inheriting was
adding python-setuptools respective python2-setuptools to [inputs],
[native-inputs] or [propagated-inputs]. Remove now needless [properties]
"python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
2016-11-15 22:28:59 +01:00
00e10c6e67
gnu: Remove python-setuptools and python2-setuptools from inputs (part 3)
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This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.
* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
python-setuptools respective python2-setuptools from [inputs],
[native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
python2-oauthlib,
python2-seaborn,
python2-tornado,
python2-terminado,
python2-rauth,
python2-anyjson,
python2-amqp,
python2-kombu,
python2-billiard,
python2-celery,
python2-jellyfish,
python2-binaryornot,
python2-natsort,
python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
2016-11-15 22:28:38 +01:00
2cab1dd58b
Merge branch 'core-updates'
2016-11-13 00:34:16 +01:00
b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode".
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This phase is no longer needed as upstream has merged the fix in the
current release.
* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
2016-11-10 18:49:49 +01:00
71e21fb26d
Merge branch 'master' into core-updates
2016-11-07 00:33:16 -05:00
73ea83f517
gnu: r-proto: Update project's home-page.
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* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06 14:35:21 +02:00
8b6ad165d1
Merge branch 'master' into core-updates
2016-11-06 03:29:06 -05:00
8af47ef603
gnu: r-nmf: Use bigmemory.
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* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.
2016-11-04 14:53:24 +01:00
59523c4cf5
gnu: Add r-bigmemory.
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* gnu/packages/statistics.scm (r-bigmemory): New variable.
2016-11-04 14:46:47 +01:00
4a83865286
gnu: Add r-synchronicity.
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* gnu/packages/statistics.scm (r-synchronicity): New variable.
2016-11-04 14:40:13 +01:00
c6105d69c0
gnu: Add r-bigmemory-sri.
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gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
2016-11-04 14:35:04 +01:00
e71659162b
gnu: r-hmisc: Update to 4.0.0.
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* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.
2016-11-03 19:01:45 +01:00
f158b92caf
gnu: r-r-oo: Update to 1.21.0.
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* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
2016-11-03 19:01:45 +01:00
f890981690
gnu: r-openssl: Update to 0.9.5.
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* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
2016-11-03 19:01:45 +01:00
fbe5161c7d
gnu: r-checkmate: Update to 1.8.2.
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* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
2016-11-03 19:01:45 +01:00
572e1a0ca7
gnu: r-acepack: Update to 1.4.1.
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* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
2016-11-03 19:01:44 +01:00
054a9a786b
gnu: r-gdtools: Update to 0.1.1.
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* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.
2016-11-03 19:01:44 +01:00
d13a4e2575
gnu: r-proto: Update to 1.0.0.
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* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
2016-11-03 19:01:44 +01:00
ebbd4d0bfd
gnu: Add r-survival.
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* gnu/packages/statistics.scm (r-survival): New variable.
2016-11-03 19:01:44 +01:00
3d82676919
Merge branch 'master' into core-updates
2016-10-27 20:21:26 -04:00
b5ce25cc0e
gnu: r: Use uname from Guix
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* gnu/packages/statistics.scm (r): Use uname from Guix.
2016-10-27 16:37:24 +02:00
02c73adcdf
Merge branch 'master' into core-updates
2016-10-26 19:00:06 -04:00
aba6463975
gnu: r: Update to 3.3.1.
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* gnu/packages/statistics.scm (r): Update to 3.3.1.
2016-10-26 18:14:17 +02:00
a8e893b0b8
gnu: r-matrixstats: Update to 0.51.0.
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* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
2016-10-26 16:23:32 +02:00
fd54f65e72
gnu: r-r-utils: Update to 2.4.0.
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* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
2016-10-26 16:23:32 +02:00
89242ea47f
gnu: r-irlba: Update to 2.1.2.
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* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
2016-10-26 16:23:31 +02:00
4f2ebc16ce
gnu: r-codetools: Update to 0.2-15.
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* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
2016-10-26 16:23:31 +02:00
cf738e961e
gnu: r-snow: Update to 0.4-2.
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* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
2016-10-26 16:23:31 +02:00
41bc22a7de
gnu: r-backports: Update to 1.0.4.
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* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
2016-10-26 16:23:30 +02:00
72263db73d
gnu: r-foreign: Update to 0.8-67.
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* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
2016-10-26 16:23:30 +02:00
130410d941
gnu: r-cluster: Update to 2.0.5.
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* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
2016-10-26 16:23:29 +02:00
e7622804aa
gnu: r-acepack: Update to 1.4.0.
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* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
2016-10-26 16:23:29 +02:00
bff4dc6324
gnu: r-r6: Update to 2.2.0.
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* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
2016-10-26 16:23:29 +02:00
e0a9093139
gnu: r-evaluate: Update to 0.10.
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* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
2016-10-26 16:23:28 +02:00
2d9da70bbe
gnu: r-reshape2: Update to 1.4.2.
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* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
2016-10-26 16:23:28 +02:00
Hartmut Goebel