d1ee1540d4
gnu: r-dose: Update to 3.10.1.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.1.
2019-05-30 13:40:48 +02:00
169d63f533
gnu: Add gthumb.
...
* gnu/packages/gnome.scm (gthumb): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-30 11:50:05 +02:00
dc37301330
gnu: sddm: Add QtQuick-related dependencies to sddm.
...
* gnu/packages/display-managers.scm (sddm): add QtQuick related
dependencies to sddm package in order to `sddm-greeter` application
to load user defined themes which are based on QtQuick.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-29 23:16:49 +02:00
4c8603e808
gnu: r-statmod: Update to 1.4.32.
...
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.32.
2019-05-29 22:38:05 +02:00
765d327c85
gnu: r-fields: Update to 9.8-3.
...
* gnu/packages/cran.scm (r-fields): Update to 9.8-3.
2019-05-29 22:38:05 +02:00
a1ac29f80d
gnu: r-bayestestr: Update to 0.2.0.
...
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.0.
2019-05-29 22:38:05 +02:00
a15cee50ce
gnu: Use make-linux-libre-headers.
...
* gnu/packages/linux.scm (make-linux-libre-headers): New variable.
(linux-libre): Rename to...
(linux-libre-5.1): ...this.
(linux-libre-headers): Rename to...
(linux-libre-headers-4.14.67): ...this.
(linux-libre-5.1, linux-libre-headers-4.14.67): Use make-linux-libre-headers.
(linux-libre-5.1, linux-libre-headers-5.1, linux-libre-headers-4.19,
%linux-libre-4.15-version, %linux-libre-4.15-hash, linux-libre-4.15,
linux-libre-headers-4.15, linux-libre-headers-4.14): New variables.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29 18:19:16 +02:00
2ea77d48a7
gnu: cross-base: Allow non-default linux-headers.
...
* gnu/packages/cross-base.scm (cross-kernel-headers): Add
LINUX-HEADERS optional argument.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29 15:44:54 +02:00
7180dd6716
gnu: Add basic support for riscv64-linux-gnu targets.
...
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add
"riscv64-linux".
* gnu/packages/linux.scm (system->linux-architecture): Add "riscv"
prefix.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29 15:40:31 +02:00
4f963be052
gnu: Add childsplay.
...
* gnu/packages/education.scm (childsplay): New variable.
2019-05-29 13:09:53 +02:00
4b92dac20f
gnu: awscli: Add missing input.
...
Fixes <https://bugs.gnu.org/35980 >.
* gnu/packages/python-web.scm (awscli)[arguments]: Add build phase
"fix-reference-to-groff".
[inputs]: Add groff.
2019-05-29 10:56:28 +02:00
d37ba98409
gnu: r-scran: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.1.
2019-05-29 00:02:42 +02:00
55cd48508e
gnu: r-scater: Update to 1.12.2.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.2.
2019-05-29 00:02:37 +02:00
102cf9a1ca
gnu: r-sva: Update to 3.32.1.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.1.
2019-05-29 00:02:31 +02:00
24f46e6e9e
gnu: r-genomicfeatures: Update to 1.36.1.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.1.
2019-05-29 00:02:25 +02:00
4eea449aaa
gnu: r-edger: Update to 3.26.4.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.4.
2019-05-29 00:02:17 +02:00
4929a30f69
gnu: r-variantannotation: Update to 1.30.1.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.1.
2019-05-29 00:02:10 +02:00
e4519ee73d
gnu: r-atacseqqc: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.1.
2019-05-28 23:56:36 +02:00
13b49976b7
gnu: r-icobra: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.1.
2019-05-28 23:56:31 +02:00
85d0bd5340
gnu: r-chippeakanno: Update to 3.18.1.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.1.
2019-05-28 23:56:27 +02:00
f43ec9e96a
gnu: r-geosphere: Update to 1.5-10.
...
* gnu/packages/cran.scm (r-geosphere): Update to 1.5-10.
2019-05-28 23:56:15 +02:00
0fe52daa59
gnu: r-ggfortify: Update to 0.4.7.
...
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.7.
2019-05-28 23:56:08 +02:00
7a8577717f
gnu: r-wgcna: Update to 1.68.
...
* gnu/packages/cran.scm (r-wgcna): Update to 1.68.
2019-05-28 23:56:04 +02:00
650e8defa0
gnu: r-bookdown: Update to 0.11.
...
* gnu/packages/cran.scm (r-bookdown): Update to 0.11.
[propagated-inputs]: Add ghc-pandoc; remove r-yaml.
2019-05-28 23:55:44 +02:00
20656a0202
gnu: r-upsetr: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-upsetr): Update to 1.4.0.
2019-05-28 23:55:38 +02:00
41059f63df
gnu: r-epi: Update to 2.37.
...
* gnu/packages/cran.scm (r-epi): Update to 2.37.
2019-05-28 23:55:33 +02:00
9a749cad19
gnu: r-etm: Update to 1.0.5.
...
* gnu/packages/cran.scm (r-etm): Update to 1.0.5.
2019-05-28 23:55:27 +02:00
10dbc3fc54
gnu: r-cmprsk: Update to 2.2-8.
...
* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-8.
2019-05-28 23:55:21 +02:00
fa10f0d330
gnu: r-ks: Update to 1.11.5.
...
* gnu/packages/cran.scm (r-ks): Update to 1.11.5.
2019-05-28 23:55:14 +02:00
1d7bde781f
gnu: r-bayesplot: Update to 1.7.0.
...
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.0.
[propagated-inputs]: Add r-glue, r-tibble, and r-tidyselect.
2019-05-28 23:54:53 +02:00
27abdb11ae
gnu: r-refgenome: Update to 1.7.7.
...
* gnu/packages/cran.scm (r-refgenome): Update to 1.7.7.
2019-05-28 23:54:46 +02:00
794c9e7d96
gnu: r-snakecase: Update to 0.11.0.
...
* gnu/packages/cran.scm (r-snakecase): Update to 0.11.0.
2019-05-28 23:54:40 +02:00
9dd351233b
gnu: r-openxlsx: Update to 4.1.0.1.
...
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.1.
2019-05-28 23:54:36 +02:00
d328379d62
gnu: r-pillar: Update to 1.4.1.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.4.1.
2019-05-28 23:54:32 +02:00
130314d8fa
gnu: r-tsp: Update to 1.1-7.
...
* gnu/packages/cran.scm (r-tsp): Update to 1.1-7.
2019-05-28 23:54:26 +02:00
6d3cfb88ea
gnu: r-jomo: Update to 2.6-8.
...
* gnu/packages/cran.scm (r-jomo): Update to 2.6-8.
2019-05-28 23:54:18 +02:00
beb82eb9d0
gnu: r-ksamples: Update to 1.2-9.
...
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-9.
2019-05-28 23:54:12 +02:00
6edf0fb3db
gnu: r-lpsolve: Update to 5.6.13.1.
...
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.13.1.
2019-05-28 23:54:07 +02:00
14532452b8
gnu: r-car: Update to 3.0-3.
...
* gnu/packages/statistics.scm (r-car): Update to 3.0-3.
2019-05-28 23:54:00 +02:00
341643c6e1
gnu: r-fpc: Update to 2.2-1.
...
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-1.
[propagated-inputs]: Remove r-trimcluster.
2019-05-28 23:53:43 +02:00
f95690ceae
gnu: r-prabclus: Update to 2.2-7.1.
...
* gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7.1.
2019-05-28 23:53:33 +02:00
1498b5a2a4
gnu: r-zoo: Update to 1.8-6.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-6.
2019-05-28 23:53:28 +02:00
3fca3fa1bc
gnu: r-rmarkdown: Update to 1.13.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.13.
[propagated-inputs]: Add r-xfun.
2019-05-28 23:53:15 +02:00
923c6ac139
gnu: r-evaluate: Update to 0.14.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.14.
2019-05-28 23:53:02 +02:00
67458e209d
gnu: python-attrs: Update to 19.1.0.
...
* gnu/packages/python-xyz.scm (python-attrs): Update to 19.1.0.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-28 21:48:10 +02:00
205eb40e5b
gnu: python-flask: Update to 1.0.3.
...
* gnu/packages/python-web.scm (python-flask): Update to 1.0.3.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-28 21:18:24 +02:00
458e92215f
gnu: d-feet: Fix missing input and update to 0.3.14.
...
* gnu/packages/gnome.scm (d-feet): Update to 0.3.14.
[inputs]: Add hicolor-icon-theme since d-feet won't list anything without it.
2019-05-28 14:53:02 +02:00
e7f078c337
gnu: guix: Update to 35d1354.
...
* gnu/packages/package-management.scm (guix): Update to 35d1354
2019-05-28 09:51:12 +02:00
70fa77d881
gnu: emacs-relint: Update to 1.8.
...
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.8.
2019-05-27 23:22:34 +02:00
d8d896c5b5
gnu: emacs-xr: Update to 1.12.
...
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.12.
2019-05-27 23:22:19 +02:00
2e5c71b2a2
gnu: guix: Add dependency on lzlib.
...
* gnu/packages/package-management.scm (guix)[inputs]: Add LZLIB.
2019-05-27 22:47:24 +02:00
8916034a34
gnu: r-shiny: Fix JavaScript minification.
...
Fixes <https://bugs.gnu.org/35923 >.
* gnu/packages/cran.scm (r-shiny)[native-inputs]: Add uglify-js.
2019-05-27 22:09:22 +02:00
ed72a133db
gnu: Add osmctools
...
* gnu/packages/geo.scm (osmctools): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-05-27 14:32:13 -04:00
521d736ae9
gnu: go@1.4: Update to 1.4-bootstrap-20171003.
...
* gnu/packages/golang.scm (go-1.4): Use the bootstrap branch that is
still supported upstream.
[version]: Update to 1.4-bootstrap-20171003.
[arguments]: Remove obsolete fix for timezone test which is now included
upstream. Don't manually disable cgo because it is disabled by default.
Manually enable test suite because future releases will disable tests by
default.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-05-27 14:26:46 -04:00
8d1647b228
gnu: python-alembic: Update to 1.0.10.
...
* gnu/packages/databases.scm (python-alembic): Update to 1.0.10.
2019-05-27 18:16:25 +02:00
cf342a8598
gnu: tlp: Add required x86-energy-perf-policy input dependency.
...
* gnu/packages/linux.scm (tlp)
[inputs]: Add system specific x86-energy-perf-policy dependency.
[arguments]<#:phases>['wrap]:
Adjust bin-directory procedure to return #f on missing input,
a guard against system specific input dependencies.
Filter only strings in the path list. Reformat for-each block.
Add x86-energy-perf-policy in bin-directory input-name list.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-05-27 16:41:12 +02:00
71bd55cb2a
gnu: Add x86-energy-perf-policy.
...
* gnu/packages/linux.scm (x86-energy-perf-policy): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-27 16:35:09 +02:00
66fca5041b
gnu: MATE: Use mirror://mate/ in source URIs.
...
* gnu/packages/mate.scm(MATE packages)[source](uri): Use "mirror://mate/"
instead of "https://pub.mate-desktop.org/releases/ " directly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-27 12:02:27 +02:00
45bdb66251
gnu: you-get: Update to 0.4.1302.
...
* gnu/packages/video.scm (you-get): Update to 0.4.1302.
2019-05-27 02:28:26 +08:00
5ea87197f6
gnu: linux-libre: Update to 5.1.5.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.5.
(%linux-libre-hash): Update hash.
2019-05-26 14:19:40 -04:00
5b7be798b2
gnu: linux-libre@4.19: Update to 4.19.46.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.46.
(%linux-libre-4.19-hash): Update hash.
2019-05-26 14:19:38 -04:00
d87d375b64
gnu: linux-libre@4.14: Update to 4.14.122.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.122.
(%linux-libre-4.14-hash): Update hash.
2019-05-26 14:19:35 -04:00
5f3f63e5ad
gnu: linux-libre@4.9: Update to 4.9.179.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.179.
2019-05-26 14:19:33 -04:00
2bdce7a654
gnu: linux-libre: Rename a patch.
...
* gnu/packages/linux.scm (%linux-libre-arm-export-__sync_icache_dcache-patch):
Remove the version from the file name, since it applies to multiple versions.
2019-05-26 14:19:04 -04:00
403b3a8c61
gnu: linux-libre-arm-generic: Move definition.
...
* gnu/packages/linux.scm (linux-libre-arm-generic): Move the definition down,
next to the other linux-libre-arm-generic-* packages.
2019-05-26 14:19:00 -04:00
efbbf9a15c
gnu: vhba-module: Remove duplicate definition.
...
This is a followup to commit e1f640db8f
2019-05-26 14:18:55 -04:00
7024846181
gnu: node: Update to 10.15.3.
...
* gnu/packages/libevent.scm (libuv-1.19): Remove variable.
* gnu/packages/node.scm (node): Update to 10.15.3.
[source]: Use XZ-compressed tarball.
[arguments]: Add #:test-target. Use DELETE-FILE instead of DELETE-IF-EXISTS.
Remove obsolete test deletions.
[inputs]: Change OPENSSL to OPENSSL-NEXT. Change LIBUV-1.19 to LIBUV.
(node-lts): Remove variable.
2019-05-26 19:48:39 +02:00
0d3dbe3f56
gnu: libevent: Update to 2.1.0.
...
* gnu/packages/patches/libevent-2.1-dns-tests.patch,
gnu/packages/patches/libevent-2.1-skip-failing-test.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/libevent.scm (libevent): Update to 2.1.10.
[source](patches): Remove.
2019-05-26 19:48:39 +02:00
304fb7000a
gnu: youtube-dl: Update to 2019.05.20.
...
* gnu/packages/video.scm (youtube-dl): Update to 2019.05.20.
Signed-off-by: Alex Vong <alexvong1995@gmail.com>
2019-05-27 01:34:09 +08:00
51daf2f553
gnu: ioquake: Build on all architectures.
...
* gnu/packages/game-development.scm (ioquake)[supported-systems]: Remove
field.
2019-05-26 20:22:36 +03:00
164cb4da63
gnu: pigx-chipseq: Update to 0.0.41.
...
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.41.
2019-05-26 10:56:52 +02:00
6d94465b4e
gnu: python-shapely: Update to 1.6.4.post2.
...
* gnu/packages/python-xyz.scm (python-shapely): Update to 1.6.4.post2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-05-26 10:22:05 +02:00
7abf3cbf71
gnu: python-psutil: Update to 5.6.2.
...
* gnu/packages/python-xyz.scm (python-psutil): Update to 5.6.2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-05-26 10:22:05 +02:00
414f545ee6
gnu: coq-equations: Update to 1.2.
...
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-05-26 10:22:05 +02:00
9c11ba9282
gnu: mgba: Update to 0.7.2.
...
* gnu/packages/emulators.scm (mgba): Update to 0.7.2.
2019-05-26 10:15:21 +02:00
d21c68ac46
gnu: kitty: Update to 0.14.0.
...
* gnu/packages/terminals.scm (kitty): Update to 0.14.0.
2019-05-26 10:15:21 +02:00
ac12a01394
gnu: wine-staging: Update to 4.9.
...
* gnu/packages/wine.scm (wine-staging-patchset-data, wine-staging):
Update to 4.9.
2019-05-26 05:22:51 +02:00
5daafe0b5d
gnu: rxcpp: Don't use unstable tarball.
...
* gnu/packages/machine-learning.scm (rxcpp)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-05-26 05:00:50 +02:00
e91a0bff01
gnu: rxcpp: Update to 4.1.0.
...
* gnu/packages/machine-learning.scm (rxcpp): Update to 4.1.0.
2019-05-26 05:00:50 +02:00
f3addff21c
gnu: libelf: Use archived home page and mirrored source.
...
* gnu/packages/elf.scm (libelf)[source]: Use mirror URLs.
[home-page]: Use archived home page.
2019-05-26 03:27:33 +02:00
dbe2dfa528
gnu: pidgin: Use HTTPS home page.
...
* gnu/packages/messaging.scm (pidgin)[home-page]: Use HTTPS.
2019-05-26 03:27:33 +02:00
569958aeb5
gnu: pidgin: Add network-manager support.
...
* gnu/packages/messaging.scm (pidgin)[inputs]: Add network-manager.
[arguments]: Undisable it in #:configure-flags.
2019-05-26 03:27:33 +02:00
0fcb0e5076
gnu: pidgin: Update to 2.13.0.
...
* gnu/packages/messaging.scm (pidgin): Update to 2.13.0.
2019-05-26 03:27:33 +02:00
a4cf65c804
gnu: pidgin: Don't use NAME in source URI.
...
* gnu/packages/messaging.scm (pidgin)[source]: Hard-code NAME.
2019-05-26 03:27:33 +02:00
8a8597819e
gnu: duplicity: Update to 0.7.19.
...
* gnu/packages/backup.scm (duplicity): Update to 0.7.19.
2019-05-26 03:27:33 +02:00
41cdaf47e1
gnu: squirrel: Fix build.
...
This follows commit 9d0c291e3e
2019-05-25 06:08:23 -04:00
7547648091
gnu: emacs-lispy: Update to 0.27.0.
...
* gnu/packages/emacs-xyz.scm (emacs-lispy): Update to 0.27.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-25 11:52:37 +02:00
c799fd63f6
gnu: emacs-avy: Update to 0.5.0.
...
* gnu/packages/emacs-xyz.scm (emacs-avy): Update to 0.5.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-25 11:52:37 +02:00
eea4ed9869
gnu: emacs-highlight-symbol: Update to 1.3.1-7a789c7.
...
* gnu/packages/emacs-xyz.scm (emacs-highlight-symbol): Update to 1.3.1-7a789c7.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-25 11:52:33 +02:00
8698d986db
gnu: supertux: Update to 0.6.0.
...
* gnu/packages/games.scm (supertux): Update to 0.6.0.
[source]: Add patches.
[arguments]: Add -DUSE_SYSTEM_PHYSFS=ON. Add 'patch-squirrel-path' phase.
[inputs]: Add freetype and squirrel.
* gnu/packages/patches/supertux-fix-build-with-gcc5.patch,
gnu/packages/patches/supertux-unbundle-squirrel.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2019-05-24 21:00:15 -04:00
608d148c50
gnu: squirrel: Install headers and documentation.
...
* gnu/packages/squirrel.scm (squirrel)[arguments]: Disable building static
libraries. Add 'install-documentation' and 'install-headers' phases.
[native-inputs]: Add python-sphinx.
2019-05-24 21:00:15 -04:00
03b630686f
gnu: squirrel: Build from a source archive instead of a Git checkout.
...
* gnu/packages/squirrel.scm (squirrel)[source]: Use url-fetch and adjust the
source URL accordingly.
2019-05-24 21:00:15 -04:00
dbe533292b
gnu: help2man: Update to 1.47.10.
...
* gnu/packages/man.scm (help2man/latest): Update to 1.47.10.
2019-05-24 21:54:32 +02:00
ceb1936aa4
gnu: python-markdown: Update to 3.1.1.
...
* gnu/packages/python-xyz.scm (python-markdown): Update to 3.1.1.
2019-05-24 21:54:32 +02:00
0cb9bacbfa
gnu: perl: Update home page.
...
* gnu/packages/perl.scm (perl)[home-page]: Use HTTPS.
2019-05-24 21:54:32 +02:00
6eceb2d445
gnu: Add python-sphinxcontrib-qthelp.
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* gnu/packages/sphinx.scm (python-sphinxcontrib-qthelp): New public variable.
2019-05-24 21:54:32 +02:00
72f278a0ff
gnu: Add python-sphinxcontrib-htmlhelp.
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* gnu/packages/sphinx.scm (python-sphinxcontrib-htmlhelp): New public variable.
2019-05-24 21:54:32 +02:00
67be8943c3
gnu: Add python-sphinxcontrib-jsmath.
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* gnu/packages/sphinx.scm (python-sphinxcontrib-jsmath): New public variable.
2019-05-24 21:54:31 +02:00
62ad0c8b0f
gnu: Add python-sphinxcontrib-devhelp.
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* gnu/packages/sphinx.scm (python-sphinxcontrib-devhelp): New public variable.
2019-05-24 21:54:31 +02:00
bc2a3f7c62
gnu: Add python-sphinxcontrib-applehelp.
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* gnu/packages/sphinx.scm (python-sphinxcontrib-applehelp): New public variable.
2019-05-24 21:54:31 +02:00
Ricardo Wurmus