5cded306f9
gnu: Add cutter.
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* gnu/packages/engineering.scm (cutter): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-08-08 20:14:14 +02:00
ae54a4c0ef
gnu: Add emacs-ox-hugo.
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gnu/packages/emacs-xyz.scm (emacs-ox-hugo): New variable
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-08-08 20:14:14 +02:00
a4a41a7ba8
gnu: git-annex: Update to 7.20190708.
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* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20190708.
[inputs]: Add new dependency, ghc-concurrent-output.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-08-08 20:14:14 +02:00
3d45d8f14b
gnu: git-annex: Don't patch shebang used in hooks.
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git-annex relies on configuring Git's pre-commit and post-receive hooks.
Avoid patching the shebang that git-annex embeds when generating these hooks
so that the hooks don't fail if garbage collection claims the bash that was
current when the annex repository was initialized.
* gnu/packages/haskell-apps.scm (git-annex):[arguments]: Patch hook shebangs
only temporarily for tests.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-08-08 20:14:14 +02:00
deccffb264
gnu: emacs-helpful: Update to 0.17.
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* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.17.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-08-08 20:14:14 +02:00
36f400f616
Merge branch 'master' into staging
2019-08-08 18:14:45 +02:00
ffc4869e45
gnu: ruby-pg: Update to 1.1.4.
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* gnu/packages/ruby.scm (ruby-pg): Update to 1.1.4.
[inputs]: Change from POSTGRESQL-9.6 to POSTGRESQL.
2019-08-08 17:48:46 +02:00
c96ec77198
gnu: exempi: Update home page.
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* gnu/packages/freedesktop.scm (exempi)[home-page]: Update to current.
2019-08-08 17:48:46 +02:00
14b80bf6ca
gnu: postgresql@9: Update to 9.6.15 [fixes CVE-2019-10208].
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* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.15.
2019-08-08 17:48:46 +02:00
cbfddc2f33
gnu: postgresql@11: Update to 11.5 [fixes CVE-2019-10208, CVE-2019-10209].
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* gnu/packages/databases.scm (postgresql-11): Update to 11.5.
2019-08-08 17:48:46 +02:00
df3db97587
gnu: exempi: Update to 2.5.1.
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* gnu/packages/freedesktop.scm (exempi): Update to 2.5.1.
2019-08-08 17:48:45 +02:00
bd12be346b
gnu: LibRaw: Update to 0.19.4.
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* gnu/packages/photo.scm (libraw): Update to 0.19.4.
2019-08-08 17:48:45 +02:00
c8f5827a56
gnu: postgresql: Udpate to 10.10 [fixes CVE-2019-10208].
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* gnu/packages/databases.scm (postgresql): Update to 10.10.
2019-08-08 17:32:18 +02:00
7ef25083f0
gnu: r-modelr: Update to 0.1.5.
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* gnu/packages/cran.scm (r-modelr): Update to 0.1.5.
[propagated-inputs]: Remove r-lazyeval; add r-rlang.
2019-08-08 17:20:46 +02:00
eb8963d989
gnu: r-quantreg: Update to 5.51.
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* gnu/packages/statistics.scm (r-quantreg): Update to 5.51.
2019-08-08 16:47:05 +02:00
eaca771e88
gnu: r-knitr: Update to 1.24.
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* gnu/packages/statistics.scm (r-knitr): Update to 1.24.
2019-08-08 16:47:05 +02:00
9649072cbd
gnu: r-markdown: Update to 1.1.
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* gnu/packages/statistics.scm (r-markdown): Update to 1.1.
[propagated-inputs]: Add r-xfun.
2019-08-08 16:47:05 +02:00
d099499e0b
gnu: r-ggsignif: Update to 0.6.0.
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* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.0.
2019-08-08 16:47:05 +02:00
90060e2071
gnu: r-hdf5array: Update to 1.12.2.
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* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.2.
2019-08-08 16:47:05 +02:00
a39f2e4cea
gnu: r-biocparallel: Update to 1.18.1.
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* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.18.1.
2019-08-08 16:47:02 +02:00
ba73c434e0
gnu: ToME4: Disable parallel build.
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* gnu/packages/games.scm (tome4)[arguments]: Add <#:parallel-build?>.
2019-08-08 16:45:14 +02:00
1a069a170c
Revert "gnu: Add vcflib."
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This reverts commit 194e45f90a
2019-08-08 15:34:05 +03:00
6bc63fd8a7
Revert "gnu: Add freebayes."
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This reverts commit 173e046950
2019-08-08 15:32:51 +03:00
173e046950
gnu: Add freebayes.
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* gnu/packages/bioinformatics.scm (freebayes): New variable.
2019-08-08 15:18:34 +03:00
194e45f90a
gnu: Add vcflib.
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* gnu/packages/bioinformatics.scm (vcflib): New variable.
2019-08-08 15:18:33 +03:00
7d71557d4d
gnu: Add fastahack.
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* gnu/packages/bioinformatics.scm (fastahack): New variable.
2019-08-08 15:18:32 +03:00
70782dddff
gnu: Add fsom.
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* gnu/packages/bioinformatics.scm (fsom): New variable.
2019-08-08 15:18:31 +03:00
8cd51276e5
gnu: Add multichoose.
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* gnu/packages/bioinformatics.scm (multichoose): New variable.
2019-08-08 15:18:30 +03:00
7faa70cf2b
gnu: Add smithwaterman.
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* gnu/packages/bioinformatics.scm (smithwaterman): New variable.
2019-08-08 15:18:29 +03:00
62a031afc4
gnu: Add tabixpp.
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* gnu/packages/bioinformatics.scm (tabixpp): New variable.
2019-08-08 15:18:14 +03:00
8378c87a59
gnu: Add network-manager-openconnect.
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* gnu/packages/gnome.scm (network-manager-openconnect): New variable.
2019-08-08 10:08:00 +03:00
caa366ec23
gnu: ghc-trifecta: Disable tests.
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* gnu/packages/haskell.scm (ghc-trifecta)[arguments]: Disable tests.
2019-08-07 22:05:34 -04:00
dbfaac113a
gnu: ghc-yaml: Disable tests.
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* gnu/packages/haskell.scm (ghc-yaml)[arguments]: Disable tests.
2019-08-07 22:05:34 -04:00
9ec2d6f84c
gnu: ghc-libmpd-haskell: Disable tests.
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* gnu/packages/haskell.scm (ghc-libmpd-haskell)[arguments]: Disable
tests.
2019-08-07 22:05:33 -04:00
3755088b54
gnu: Remove ghc-packedstring.
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The package has no reverse dependencies and is deprecated upstream.
* gnu/packages/haskell.scm (ghc-packedstring): Remove variable.
2019-08-07 22:05:33 -04:00
63edeca773
gnu: Remove ghc-haddock-test.
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The package doesn't build, has no reverse dependencies, and is
deprecated upstream.
* gnu/packages/haskell.scm (ghc-haddock-test): Remove variable.
2019-08-07 22:05:33 -04:00
0d59302eba
gnu: Remove ghc-regex-tdfa-rc.
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The package doesn't build, has no reverse dependencies, and is deprecated
upstream.
* gnu/packages/haskell.scm (ghc-regex-tdfa-rc): Remove variable.
2019-08-07 22:05:33 -04:00
8ede1021c8
gnu: Add ghc-snap-server.
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* gnu/packages/haskell-web.scm (ghc-snap-server): New variable.
2019-08-07 22:05:33 -04:00
4f1793a2be
gnu: Add ghc-snap-core.
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* gnu/packages/haskell-web.scm (ghc-snap-core): New variable.
2019-08-07 22:05:32 -04:00
4ccd679f25
gnu: Add ghc-http-streams.
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* gnu/packages/haskell-web.scm (ghc-http-streams): New variable.
2019-08-07 22:05:32 -04:00
0173cdd31d
gnu: Add ghc-http-common.
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* gnu/packages/haskell-web.scm (ghc-http-common): New variable.
2019-08-07 22:05:32 -04:00
4ba66e6f16
gnu: Add ghc-openssl-streams.
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* gnu/packages/haskell-crypto.scm (ghc-openssl-streams): New variable.
2019-08-07 22:05:32 -04:00
0925b80409
gnu: Add ghc-hsopenssl.
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* gnu/packages/haskell-crypto.scm (ghc-hsopenssl): New variable.
2019-08-07 22:05:32 -04:00
7b01a977e4
gnu: Add ghc-io-streams-haproxy.
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* gnu/packages/haskell-xyz.scm (ghc-io-streams-haproxy): New variable.
2019-08-07 22:05:32 -04:00
658dbc7ff2
gnu: Add ghc-io-streams.
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* gnu/packages/haskell-xyz.scm (ghc-io-streams): New variable.
2019-08-07 22:05:31 -04:00
14e4199646
gnu: Add ghc-zlib-bindings.
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* gnu/packages/haskell-xyz.scm (ghc-zlib-bindings): New variable.
2019-08-07 22:05:31 -04:00
bbf8bf31e4
gnu: Add ghc-threads.
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* gnu/packages/haskell-xyz.scm (ghc-threads): New variable.
2019-08-07 22:05:31 -04:00
b57e99f574
gnu: Add ghc-readable.
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* gnu/packages/haskell-xyz.scm (ghc-readable): New variable.
2019-08-07 22:05:31 -04:00
efb96749a2
gnu: Add ghc-concurrent-extra.
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* gnu/packages/haskell-xyz.scm (ghc-concurrent-extra): New variable.
2019-08-07 22:05:31 -04:00
79fcc5e59b
gnu: Add ghc-language-glsl.
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* gnu/packages/haskell-xyz.scm (ghc-language-glsl): New variable.
2019-08-07 22:05:30 -04:00
Jovany Leandro G.C