Commit Graph

29189 Commits (d79c8148ccf4c28f99b62fb19234da58e16138c9)

Author SHA1 Message Date
Tobias Geerinckx-Rice 351a12b0a7
gnu: oniguruma: Update to 6.9.0.
* gnu/packages/textutils.scm (oniguruma): Update to 6.9.0.
2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 33bddd309c
gnu: motion: Install translations.
* gnu/packages/video.scm (motion)[native-inputs]: Add gettext-minimal.
2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 2ea678fabf
gnu: motion: Don't use unstable tarball.
* gnu/packages/video.scm (motion)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 4fbcfc1482
Keep (gnu packages video) module imports in order.
* gnu/packages/video.scm (define-module): Re-order module imports
alphabetically.
2018-11-01 04:33:54 +01:00
Tobias Geerinckx-Rice c3069cd183
gnu: motion: Update to 4.2.
* gnu/packages/video.scm (motion): Update to 4.2.
2018-11-01 04:32:35 +01:00
Tobias Geerinckx-Rice 2930a39b16
gnu: julia: Update objconv input to 2018-10-07.
* gnu/packages/julia.scm (julia)[input]: Update objconf to 2018-10-07.
2018-11-01 04:32:35 +01:00
Efraim Flashner c16913d34d
gnu: myrepos: Update to 1.20180726.
* gnu/packages/version-control.scm (myrepos): Update to 1.20180726.
[source]: Remove patch.
* gnu/packages/patches/myrepos-CVE-2018-7032.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-31 21:57:02 +02:00
Leo Famulari c438e0cc74
gnu: curl: Update grafted replacement to 7.62.0 [security fixes].
Fixes CVE-2018-{16839,16840,16842}.

* gnu/packages/curl.scm (curl)[replacement]: Update to 7.62.0.
(curl-7.61.1): Replace with ...
(curl-7.62.0): ... new variable.
2018-10-31 13:54:20 -04:00
Rutger Helling 124e9d6e0a
gnu: dolphin-emu: Update to commit 22ddd11.
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 22ddd11.
[arguments]: Return #t with phase 'fixgcc7.
2018-10-31 10:40:04 +01:00
Rutger Helling 3126bee69a
gnu: wine-staging: Update to 3.19.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.19.
* gnu/packages/wine.scm (wine-staging): Update to 3.19.
2018-10-31 09:39:55 +01:00
Mark H Weaver a45a92ccd8
gnu: webkitgtk@2.22: Update to 2.22.3.
* gnu/packages/webkit.scm (webkitgtk-2.22): Update to 2.22.3.
2018-10-31 01:47:52 -04:00
Arun Isaac c7ac8e36e2
gnu: quaternion: Update to 0.0.9.3.
* gnu/packages/messaging.scm (quaternion): Update to 0.0.9.3.
[inputs]: Add qtquickcontrols, qtsvg and qttools.
[arguments]: Remove fix-libqmatrixclient-dynamic-linking phase. Add
wrap-program phase.
2018-10-31 09:31:59 +05:30
Arun Isaac c6588749a6
gnu: libqmatrixclient: Update to 0.4.0.
* gnu/packages/messaging.scm (libqmatrixclient): Update to 0.4.0.
2018-10-31 09:31:59 +05:30
Tobias Geerinckx-Rice b590951ff2
gnu: meandmyshadow: Update home page.
* gnu/packages/games.scm (meandmyshadow)[home-page]: Follow permanent
redirect.
2018-10-31 02:31:18 +01:00
Tobias Geerinckx-Rice 1d9a9d27ae
gnu: meandmyshadow: Update to 0.5.
* gnu/packages/games.scm (meandmyshadow): Update to 0.5.
[source]: Add unreleased bugfix patch.
[arguments]: Remove obsolete ‘set-sdl'paths’ phase.
[inputs]: Switch to SDL 2. Add lua. Remove libx11, mesa, and glu.
* gnu/packages/patches/meandmyshadow-define-paths-earlier.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-31 02:31:18 +01:00
Tobias Geerinckx-Rice 4cae7e67f3
gnu: hyperrogue: Update to 10.4x.
* gnu/packages/games.scm (hyperrogue): Update to 10.4x.
2018-10-30 23:40:43 +01:00
Tobias Geerinckx-Rice 21fc352bad
gnu: yosys: Don't use unstable tarball.
* gnu/packages/fpga.scm (yosys)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-10-30 23:40:43 +01:00
Tobias Geerinckx-Rice becee7029f
gnu: disorderfs: Update to 0.5.5.
* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.5.
2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 58cd3123ac
gnu: pulseview: Update to 0.4.1.
* gnu/packages/electronics.scm (pulseview): Update to 0.4.1.
[arguments]: Remove CMAKE_CXX_FLAGS from #:configure-flags. (Keep)
build(ing) the unit tests. Add a ‘remove-empty-doc-directory’ phase.
2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 61c58b7827
gnu: sigrok-cli: Update to 0.7.1.
* gnu/packages/electronics.scm (sigrok-cli): Update to 0.7.1.
2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 295fc4152a
gnu: cloc: Update to 1.80.
* gnu/packages/code.scm (cloc): Update to 1.80.
2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 1204402a90
gnu: python-partd: Update to 0.3.9.
* gnu/packages/python.scm (python-partd): Update to 0.3.9.
2018-10-30 23:40:42 +01:00
Ricardo Wurmus fd649d1e68
gnu: Add r-r2glmm.
* gnu/packages/cran.scm (r-r2glmm): New variable.
2018-10-30 22:47:35 +01:00
Ricardo Wurmus 7c02dd6268
gnu: Add r-lmertest.
* gnu/packages/cran.scm (r-lmertest): New variable.
2018-10-30 22:47:26 +01:00
Ricardo Wurmus 49863fd695
gnu: Add r-afex.
* gnu/packages/cran.scm (r-afex): New variable.
2018-10-30 22:47:18 +01:00
Ricardo Wurmus 20ff6e3a34
gnu: Add r-mvabund.
* gnu/packages/cran.scm (r-mvabund): New variable.
2018-10-30 22:47:10 +01:00
Ricardo Wurmus 4fb35ebd8d
gnu: Add r-rcppgsl.
* gnu/packages/cran.scm (r-rcppgsl): New variable.
2018-10-30 22:47:00 +01:00
Ricardo Wurmus 373cef0a0c
gnu: Add r-tweedie.
* gnu/packages/cran.scm (r-tweedie): New variable.
2018-10-30 22:46:47 +01:00
Ricardo Wurmus 32499b26e6
gnu: Add r-clusteval.
* gnu/packages/cran.scm (r-clusteval): New variable.
2018-10-30 22:13:01 +01:00
Ricardo Wurmus 7a06cdfa8c
gnu: r-analytics: Update to 3.0.
* gnu/packages/cran.scm (r-analytics): Update to 3.0.
[propagated-inputs]: Add r-vim.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus e5f9e9fa79
gnu: r-radiant-data: Update to 0.9.7.
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.7.
[propagated-inputs]: Add r-shinyfiles and r-summarytools.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus 39528a5ee9
gnu: r-pracma: Update to 2.1.8.
* gnu/packages/maths.scm (r-pracma): Update to 2.1.8.
[propagated-inputs]: Remove r-quadprog.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus 4633c8e6fc
gnu: r-shinydashboard: Update to 0.7.1.
* gnu/packages/web.scm (r-shinydashboard): Update to 0.7.1.
[propagated-inputs]: Add r-promises.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus 65279cc8f3
gnu: Add r-shinyfiles.
* gnu/packages/web.scm (r-shinyfiles): New variable.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus a056e2251e
gnu: r-htmlwidgets: Update to 1.3.
* gnu/packages/web.scm (r-htmlwidgets): Update to 1.3.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus f697ef4a0d
gnu: r-servr: Update to 0.11.
* gnu/packages/web.scm (r-servr): Update to 0.11.
2018-10-30 21:48:10 +01:00
Ricardo Wurmus 8871a51350
gnu: r-webshot: Update to 0.5.1.
* gnu/packages/cran.scm (r-webshot): Update to 0.5.1.
[propagated-inputs]: Add r-callr; remove r-processx and r-withr.
2018-10-30 21:48:09 +01:00
Ricardo Wurmus d42f741035
gnu: r-dendextend: Update to 1.9.0.
* gnu/packages/cran.scm (r-dendextend): Update to 1.9.0.
2018-10-30 21:48:09 +01:00
Ricardo Wurmus 31c8d9fe00
gnu: r-emmeans: Update to 1.3.0.
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.0.
2018-10-30 21:48:09 +01:00
Ricardo Wurmus bec74196ea
gnu: r-abps: Update to 0.3.
* gnu/packages/cran.scm (r-abps): Update to 0.3.
2018-10-30 21:48:09 +01:00
Ricardo Wurmus 464676a970
gnu: r-proc: Update to 1.13.0.
* gnu/packages/cran.scm (r-proc): Update to 1.13.0.
2018-10-30 21:48:03 +01:00
Ricardo Wurmus 71d995392b
gnu: r-rdpack: Update to 0.10-1.
* gnu/packages/cran.scm (r-rdpack): Update to 0.10-1.
2018-10-30 21:47:54 +01:00
Ricardo Wurmus 081af9fae7
gnu: r-hdf5r: Update to 1.0.1.
* gnu/packages/cran.scm (r-hdf5r): Update to 1.0.1.
2018-10-30 21:47:46 +01:00
Ricardo Wurmus 08645fcff5
gnu: r-fansi: Update to 0.4.0.
* gnu/packages/cran.scm (r-fansi): Update to 0.4.0.
2018-10-30 21:47:37 +01:00
Ricardo Wurmus 7608984fe9
gnu: r-later: Update to 0.7.5.
* gnu/packages/cran.scm (r-later): Update to 0.7.5.
2018-10-30 21:47:28 +01:00
Ricardo Wurmus 80234d3294
gnu: r-maptools: Update to 0.9-4.
* gnu/packages/cran.scm (r-maptools): Update to 0.9-4.
2018-10-30 21:47:20 +01:00
Ricardo Wurmus fda8dd58c2
gnu: r-shinyace: Update to 0.3.2.
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.2.
2018-10-30 21:47:06 +01:00
Ricardo Wurmus 02c57c018a
gnu: r-np: Update to 0.60-9.
* gnu/packages/cran.scm (r-np): Update to 0.60-9.
2018-10-30 21:46:57 +01:00
Ricardo Wurmus 44de41b572
gnu: r-expm: Update to 0.999-3.
* gnu/packages/cran.scm (r-expm): Update to 0.999-3.
2018-10-30 21:46:48 +01:00
Ricardo Wurmus 484e81f73a
gnu: r-cubature: Update to 1.4-1.
* gnu/packages/cran.scm (r-cubature): Update to 1.4-1.
2018-10-30 21:46:36 +01:00
Ricardo Wurmus 905734fd7c
gnu: r-extradistr: Update to 1.8.10.
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.10.
2018-10-30 21:46:26 +01:00
Ricardo Wurmus 534bf85b9d
gnu: r-ttr: Update to 0.23-4.
* gnu/packages/cran.scm (r-ttr): Update to 0.23-4.
2018-10-30 21:46:17 +01:00
Ricardo Wurmus dda4ce560f
gnu: r-tinytex: Update to 0.9.
* gnu/packages/cran.scm (r-tinytex): Update to 0.9.
2018-10-30 21:46:10 +01:00
Ricardo Wurmus a8de3090d8
gnu: r-xfun: Update to 0.4.
* gnu/packages/cran.scm (r-xfun): Update to 0.4.
2018-10-30 21:46:00 +01:00
Ricardo Wurmus 8c456dff26
gnu: r-fitdistrplus: Update to 1.0-11.
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-11.
[propagated-inputs]: Add r-npsurv.
2018-10-30 21:45:51 +01:00
Ricardo Wurmus bba80fadbe
gnu: r-magic: Update to 1.5-9.
* gnu/packages/cran.scm (r-magic): Update to 1.5-9.
2018-10-30 21:45:42 +01:00
Ricardo Wurmus 5621b8403b
gnu: r-sm: Update to 2.2-5.6.
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.6.
2018-10-30 21:45:32 +01:00
Ricardo Wurmus 870faab4b7
gnu: r-xts: Update to 0.11-1.
* gnu/packages/cran.scm (r-xts): Update to 0.11-1.
2018-10-30 21:45:16 +01:00
Ricardo Wurmus 16a39c2d56
gnu: r-ggridges: Update to 0.5.1.
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.1.
2018-10-30 21:45:07 +01:00
Ricardo Wurmus 9e82d6080e
gnu: r-cli: Update to 1.0.1.
* gnu/packages/cran.scm (r-cli): Update to 1.0.1.
2018-10-30 21:44:59 +01:00
Ricardo Wurmus 2b8126a4ec
gnu: r-reshape: Update to 0.8.8.
* gnu/packages/cran.scm (r-reshape): Update to 0.8.8.
2018-10-30 21:44:48 +01:00
Ricardo Wurmus ecdfca05c8
gnu: r-ffbase: Update to 0.12.5.
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.5.
2018-10-30 21:44:38 +01:00
Ricardo Wurmus 674c818560
gnu: r-rcpp: Update to 0.12.19.
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.19.
2018-10-30 21:44:28 +01:00
Ricardo Wurmus 0ab28e5450
gnu: r-pkgload: Update to 1.0.1.
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.1.
2018-10-30 21:43:38 +01:00
Ricardo Wurmus 2657e666cb
gnu: r-pkgbuild: Update to 1.0.2.
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.2.
[propagated-inputs]: Add r-cli and r-prettyunits.
2018-10-30 21:43:28 +01:00
Ricardo Wurmus 7e127ab128
gnu: r-ps: Update to 1.2.0.
* gnu/packages/cran.scm (r-ps): Update to 1.2.0.
2018-10-30 21:43:19 +01:00
Ricardo Wurmus b62e104b84
gnu: r-ape: Update to 5.2.
* gnu/packages/cran.scm (r-ape): Update to 5.2.
2018-10-30 21:43:10 +01:00
Ricardo Wurmus 1c9906c2dd
gnu: r-reprex: Update to 0.2.1.
* gnu/packages/cran.scm (r-reprex): Update to 0.2.1.
[propagated-inputs]: Add r-fs, remove r-knitr.
2018-10-30 21:42:59 +01:00
Ricardo Wurmus 6b451c0801
gnu: r-gprofiler: Update to 0.6.7.
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.7.
2018-10-30 21:42:48 +01:00
Ricardo Wurmus 4fc6609a0c
gnu: r-keggrest: Update to 1.20.2.
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.2.
2018-10-30 21:42:39 +01:00
Ricardo Wurmus 67cfb83ff1
gnu: r-msnbase: Update to 2.6.4.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.4.
2018-10-30 21:42:31 +01:00
Ricardo Wurmus 807d961cc9
gnu: r-methylkit: Update to 1.6.3.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.3.
2018-10-30 21:42:20 +01:00
Ricardo Wurmus ac0166450d
gnu: r-wgcna: Update to 1.66.
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.66.
2018-10-30 21:42:09 +01:00
Ricardo Wurmus 1182460750
gnu: r-go-db: Update to 3.6.0.
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.6.0.
2018-10-30 21:42:00 +01:00
Ricardo Wurmus 466bf3af89
gnu: r-genomicfeatures: Update to 1.32.3.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.3.
2018-10-30 21:41:12 +01:00
Ricardo Wurmus dd0216e0e7
gnu: r-delayedarray: Update to 0.6.6.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.6.
2018-10-30 21:40:57 +01:00
Ricardo Wurmus 72408357fa
gnu: r-genomicranges: Update to 1.32.7.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.7.
2018-10-30 21:40:48 +01:00
Ricardo Wurmus 9dad1957ab
gnu: r-limma: Update to 3.36.5.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.5.
2018-10-30 21:40:40 +01:00
Ricardo Wurmus 57cf6a14f0
gnu: r-edger: Update to 3.22.5.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.5.
2018-10-30 21:40:32 +01:00
Ricardo Wurmus eb890466fa
gnu: r-genomeinfodbdata: Update to 1.1.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.1.0.
2018-10-30 21:40:22 +01:00
Ricardo Wurmus e563acb96b
gnu: r-iranges: Update to 2.14.12.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.12.
2018-10-30 21:40:12 +01:00
Ricardo Wurmus 192c19f484
gnu: r-vegan: Update to 2.5-3.
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-3.
2018-10-30 21:40:00 +01:00
Ricardo Wurmus 696e1ce263
gnu: r-graph: Update to 1.58.2.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.58.2.
2018-10-30 21:39:50 +01:00
Ricardo Wurmus 6ab5670aba
gnu: r-nloptr: Update to 1.2.1.
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.1.
[native-inputs]: Add r-knitr and gfortran.
2018-10-30 21:39:39 +01:00
Ricardo Wurmus c5bd8a7c23
gnu: r-devtools: Update to 2.0.1.
* gnu/packages/statistics.scm (r-devtools): Update to 2.0.1.
[propagated-inputs]: Remove r-whisker; add r-callr, r-cli, r-pkgbuild,
r-pkgload, r-rcmdcheck, r-remotes, r-sessioninfo, and r-usethis.
2018-10-30 21:39:29 +01:00
Ricardo Wurmus aa99568639
gnu: r-evaluate: Update to 0.12.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.12.
[propagated-inputs]: Remove r-stringr.
2018-10-30 21:39:16 +01:00
Ricardo Wurmus 60aac7ec16
gnu: r-robustbase: Update to 0.93-3.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-3.
2018-10-30 21:39:06 +01:00
Ricardo Wurmus 16508df1d3
gnu: r-cardata: Update to 3.0-2.
* gnu/packages/statistics.scm (r-cardata): Update to 3.0-2.
2018-10-30 21:38:55 +01:00
Ricardo Wurmus 98a4b9d040
gnu: r-zoo: Update to 1.8-4.
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-4.
2018-10-30 21:38:35 +01:00
Ricardo Wurmus 834f203c07
gnu: r-tidyselect: Update to 0.2.5.
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.5.
2018-10-30 21:38:25 +01:00
Ricardo Wurmus 33fb92aacd
gnu: r-doparallel: Update to 1.0.14.
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.14.
2018-10-30 21:38:16 +01:00
Ricardo Wurmus 3ea7aefd59
gnu: r-snow: Update to 0.4-3.
* gnu/packages/statistics.scm (r-snow): Update to 0.4-3.
2018-10-30 21:38:03 +01:00
Ricardo Wurmus 62a7492c90
gnu: r-plotrix: Update to 3.7-4.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-4.
2018-10-30 21:37:53 +01:00
Ricardo Wurmus 943cab4f72
gnu: r-rstudioapi: Update to 0.8.
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.8.
2018-10-30 21:37:35 +01:00
Ricardo Wurmus 960425c9e3
gnu: r-commonmark: Update to 1.6.
* gnu/packages/statistics.scm (r-commonmark): Update to 1.6.
2018-10-30 21:37:25 +01:00
Ricardo Wurmus e028eaa992
gnu: r-coda: Update to 0.19-2.
* gnu/packages/statistics.scm (r-coda): Update to 0.19-2.
2018-10-30 21:37:14 +01:00
Ricardo Wurmus 672ba7494b
gnu: r-data-table: Update to 1.11.8.
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.8.
2018-10-30 21:37:03 +01:00
Ricardo Wurmus f75ee8c691
gnu: r-dplyr: Update to 0.7.7.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.7.
2018-10-30 21:36:54 +01:00
Ricardo Wurmus 17f6198f06
gnu: r-rlang: Update to 0.3.0.1.
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.0.1.
2018-10-30 21:36:44 +01:00
Ricardo Wurmus 822863f8f9
gnu: r-r6: Update to 2.3.0.
* gnu/packages/statistics.scm (r-r6): Update to 2.3.0.
2018-10-30 21:36:35 +01:00