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Author SHA1 Message Date
Mark H Weaver 6c83c48391
gnu: icecat: Update to 60.8.0-guix1 [security fixes]. 
Includes fixes for CVE-2019-9811, CVE-2019-11709, CVE-2019-11711,
CVE-2019-11712, CVE-2019-11713, CVE-2019-11715, CVE-2019-11717,
CVE-2019-11719, CVE-2019-11729, and CVE-2019-11730.

* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.8.0-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
(icecat): Refresh some stale comments.
 2019-07-09 19:31:36 -04:00
Marius Bakke 7a05fdd0e1
Merge branch 'master' into staging 2019-07-10 00:55:42 +02:00
Marius Bakke 760d90cc6a
gnu: ungoogled-chromium: Increase build timeout. 
* gnu/packages/chromium.scm (ungoogled-chromium)[properties]: Set TIMEOUT to
40 hours.
 2019-07-10 00:54:29 +02:00
Tobias Geerinckx-Rice 12b1ec6617
gnu: iproute2: Update to 5.2.0. 
* gnu/packages/linux.scm (iproute): Update to 5.2.0.
 2019-07-09 23:08:50 +02:00
Oleg Pykhalov 38a9b4b74e
gnu: python-internetarchive: Update to 1.8.5. 
* gnu/packages/web.scm (python-internetarchive)[version]: Update to 1.8.5.
[source](modules, snippet): New fields.
 2019-07-09 20:41:14 +03:00
Efraim Flashner 710f027765
gnu: wgetpaste: Update to 2.29. 
* gnu/packages/wget.scm (wgetpaste): Update to 2.29.
[arguments]: Replace default paste service. Install license file.
 2019-07-09 16:52:59 +03:00
Oleg Pykhalov 534ceb7de1
gnu: emacs-stumpwm-mode: Update to 0.0.1-1.8fbe071. 
* gnu/packages/emacs-xyz.scm (emacs-stumpwm-mode): Update to 0.0.1-1.8fbe071.
 2019-07-09 14:42:22 +03:00
Tobias Geerinckx-Rice 48182cff03
gnu: r-biocinstaller: Remove entirely. 
This follows up on commit 0971f8bd88,
which led to ‘r-biocmanager: unbound variable’ errors.  See
<https://lists.gnu.org/archive/html/guix-devel/2019-07/msg00120.html>.

* gnu/packages/bioinformatics.scm (r-biocinstaller): Remove variable.
 2019-07-09 13:26:26 +02:00
Hartmut Goebel 582de58c69
gnu: Add anonip. 
* gnu/packages/web.scm (anonip): New variable.
 2019-07-09 13:20:36 +02:00
Nicolas Goaziou 3c2bbbb0ff
gnu: snap: Update to 5.0.1. 
* gnu/packages/education.scm (snap): Update to 5.0.1.
 2019-07-09 09:13:43 +02:00
Nicolas Goaziou 032ca4baa7
gnu: musescore: Update to 3.2.3. 
* gnu/packages/music.scm (musescore): Update to 3.2.3.
 2019-07-09 09:02:50 +02:00
Tobias Geerinckx-Rice 3fd3dd33cb
gnu: libmicrohttpd: Update to 0.9.65. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.65.
 2019-07-09 04:48:02 +02:00
Tobias Geerinckx-Rice 35014c402d
gnu: grub: Build ‘grub-mount’. 
This increases the closure size by a mere 1.8 MiB (0.8%).

* gnu/packages/bootloaders.scm (grub)[inputs]: Add fuse.
 2019-07-09 01:43:31 +02:00
Tobias Geerinckx-Rice 069ab3bbfd
gnu: grub: Update to 2.04. 
* gnu/packages/bootloaders.scm (grub): Update to 2.04.
[source]: Remove upstreamed patches.
[arguments]: Don't require Python.  Add a ‘disable-pixel-perfect-test’
phase to skip tests that fail with with our newer Unifont.
* gnu/packages/patches/grub-efi-fat-serial-number.patch: Adjust context.
* gnu/packages/patches/grub-binutils-compat.patch,
gnu/packages/patches/grub-check-error-efibootmgr.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2019-07-09 01:28:11 +02:00
Tobias Geerinckx-Rice 0971f8bd88
gnu: Remove r-biocinstaller. 
It requires R < 3.6 and is no longer supported.

* gnu/packages/bioinformatics.scm (r-biocinstaller): Define as
deprecated in favour of r-biocmanager.
 2019-07-08 16:13:11 +02:00
Tobias Geerinckx-Rice 1042e3481d
gnu: r-xbioc: Update to 0.1.16-1.6ff0670. 
This is needed to deprecate r-biocinstaller, which is no longer
distributed.

* gnu/packages/bioinformatics.scm (r-xbioc): Update to 0.1.16-1.6ff0670.
[propagated-inputs]: Replace deprecated r-biocinstaller with
r-biocmanager.
 2019-07-08 16:11:55 +02:00
Tobias Geerinckx-Rice ddfb62807d
gnu: cmh: Fix build. 
This follows up on commit 1de48e8f8a.

* gnu/packages/algebra.scm (fplll-4-cmh): New variable.
(cmh)[inputs]: Use it.
 2019-07-08 15:48:07 +02:00
Tobias Geerinckx-Rice 69e3512b7c
gnu: libomp: Download over HTTPS. 
* gnu/packages/llvm.scm (libomp)[source]: Use HTTPS.
 2019-07-08 15:33:35 +02:00
Tobias Geerinckx-Rice e2170c3192
gnu: libomp: Fix source hash. 
This is a follow-up to commit c5296e205b,
which updated llvm.

* gnu/packages/llvm.scm (libomp)[source]: Fix hash.
 2019-07-08 15:33:35 +02:00
Tobias Geerinckx-Rice 61242625ad
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.7. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.7.
 2019-07-08 15:33:35 +02:00
Joseph LaFreniere 377b0501c4
gnu: Add emacs-polymode-org. 
* gnu/packages/emacs-xyz.scm (emacs-polymode-org): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
Joseph LaFreniere 85630d8042
gnu: emacs-polymode: Update to 0.2. 
* gnu/packages/emacs-xyz.scm (emacs-polymode): Update to 0.2.
[source]: Change URL of Git repository to Polymode GitHub project.
[homepage]: Change URL to polymode GitHub project.
[description]: Realign text.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
ison 88a29b5cd3
gnu: i3blocks: Update to ec050e7. 
* gnu/packages/wm.scm (i3blocks): Update to ec050e7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
Pierre Langlois a55dd25d3e
gnu: dosfstools: Enable compat symlinks. 
Enable compatibility symlinks to provide commands such as `mkfs.vfat`.

* gnu/packages/disk.scm (dosfstools)[arguments]: Pass
"--enable-compat-symlinks" to configure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
Pierre Langlois b9a1d74de5
gnu: wireservice: New wireservice-package macro. 
Replace the parent 'base-package' variable with a 'wireservice-package' macro
that includes all common package fields.

* gnu/packages/wireservice.scm (base-package): Delete.
(wireservice-package): New macro.
(python-leather, python-agate, python-agate-sql, python-agate-dbf,
python-agate-excel): Use wireservice-package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:55 +02:00
Efraim Flashner c7b757c46c
gnu: gama: Update to 2.06. 
* gnu/packages/gps.scm (gama): Update to 2.06.
 2019-07-08 10:38:23 +03:00
Vagrant Cascadian d335ef51d7
gnu: diffoscope: Update to 116. 
* gnu/packages/package-management (diffoscope): Update to 116.
 2019-07-07 18:57:28 -07:00
Pierre Langlois bf187d92e3
gnu: Add csvkit. 
* gnu/packages/wireservice.scm (csvkit): New variable.
* gnu/packages/patches/csvkit-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois 213b05f04e
gnu: Add python-agate-excel. 
* gnu/packages/wireservice.scm (python-agate-excel): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois f1122a2c91
gnu: Add python-agate-dbf. 
* gnu/packages/wireservice.scm (python-agate-dbf): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois 9b2850c845
gnu: Add python-agate-sql. 
* gnu/packages/wireservice.scm (python-agate-sql): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois dc835e75ce
gnu: Add python-agate. 
* gnu/packages/wireservice.scm (python-agate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois 451742bcf6
gnu: Add python-leather. 
* gnu/packages/wireservice.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois edeb04bfb7
gnu: Add python-dbfread. 
* gnu/packages/python-xyz.scm (python-dbfread): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois 450d5dc289
gnu: Add python-crate. 
* gnu/packages/databases.scm (python-crate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois 0d5b7ea11f
gnu: Add python-pytimeparse. 
* gnu/packages/time.scm (python-pytimeparse): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Pierre Langlois 6543bc80b4
gnu: Add python-slugify. 
* gnu/packages/python-web.scm (python-slugify): New variable.
* gnu/packages/patches/python-slugify-depend-on-unidecode.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung e41ba8606f
gnu: Add emacs-moe-theme-el. 
* gnu/packages/emacs-xyz.scm (emacs-moe-theme-el): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung ae429e48d1
gnu: emacs-goto-chg: Update to 1.7.3-1.1829a13. 
* gnu/packages/emacs-xyz.scm (emacs-goto-chg): Update to 1.7.3-1.1829a13.
[origin]: Use GIT-FETCH and GIT-REFERENCE.
[home-page]: Update.
[inputs]: Add emacs-undo-tree.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung 81d1baafdb
gnu: emacs-hydra: Update to 0.15.0. 
* gnu/packages/emacs-xyz.scm (emacs-hydra): Update to 0.15.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung b453637f1b
gnu: Add emacs-lpy. 
* gnu/packages/emacs-xyz.scm (emacs-lpy): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung 55a0b2a08d
gnu: emacs-md4rd: Update to 0.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-md4rd): Update to 0.3.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung 26150eac73
gnu: emacs-zoutline: Update to 0.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-zoutline): Update to 0.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung 9f6dca4de3
gnu: emacs-restclient: Update to 0-2.422ee8d. 
* gnu/packages/emacs-xyz.scm (emacs-restclient): Update to 0-2.422ee8d.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung fa71034115
gnu: emacs-disk-usage: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-disk-usage)[source]: Use GIT-FETCH and GIT-FILE-NAME.
[home-page] Move to usual location.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung 8330715878
gnu: emacs-fish-completion: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-fish-completion)[source]: Use GIT-FETCH
  and GIT-FILE-NAME.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung 846d83482f
gnu: emacs-company-restclient: Update to 0.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-company-restclient): Update to 0.3.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung 1fd2886ca7
gnu: emacs-skewer-mode: Update to 1.8.0. 
* gnu/packages/emacs-xyz.scm (emacs-skewer-mode): Update to 1.8.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung 9ee3be1bd5
gnu: emacs-simple-httpd: Update to 1.5.1. 
* gnu/packages/emacs-xyz.scm (emacs-simple-httpd): Update to 1.5.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung 1c9ea5aaa4
gnu: emacs-git-timemachine: Update to 4.10. 
* gnu/packages/emacs-xyz.scm (emacs-git-timemachine): Update to 4.10.
[propagated-inputs] Add emacs-transient.
[source] Use GIT-FETCH and GIT-REFERENCE.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:17 +02:00
Rutger Helling aad6596294
gnu: wine-staging: Update to 4.12.1. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.12.1.
* gnu/packages/wine.scm (wine-staging): Update to 4.12.1.
 2019-07-07 13:51:06 +02:00
Christopher Baines d029afdd2d
gnu: Update lollypop to 1.1.3.1. 
* gnu/packages/gnome.scm (lollypop): Update to 1.1.3.1.
[inputs]: Add python-pil.
 2019-07-07 12:24:19 +01:00
Marius Bakke 36175a3a9e
Merge branch 'master' into staging 2019-07-07 01:18:18 +02:00
Marius Bakke c72647fbae
gnu: xpad: Build against gtksourceview@3. 
* gnu/packages/gnome.scm (xpad)[inputs]: Change GTKSOURCEVIEW to GTKSOURCEVIEW-3.
 2019-07-06 20:43:00 +02:00
Marius Bakke 4ed252c332
gnu: jsoncpp: Update to 1.9.0. 
* gnu/packages/serialization.scm (jsoncpp): Update to 1.9.0.
 2019-07-06 18:49:52 +02:00
Marius Bakke f1818f96a3
gnu: jsoncpp: Fetch sources through git. 
* gnu/packages/serialization.scm (jsoncpp)[source]: Switch to GIT-FETCH.
 2019-07-06 18:48:56 +02:00
Marius Bakke f4d562b008
gnu: libraw: Update to 0.19.3. 
* gnu/packages/photo.scm (libraw): Update to 0.19.3.
 2019-07-06 18:44:15 +02:00
Marius Bakke e9cb6edd06
gnu: python-soupsieve: Update to 1.9.2. 
* gnu/packages/python-xyz.scm (python-soupsieve): Update to 1.9.2.
 2019-07-06 18:39:17 +02:00
Brian Leung e39d4933d1
gnu: python-setuptools: Update to 41.0.1. 
* gnu/packages/python-xyz.scm (python-setuptools): Update to 41.0.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-07-06 18:26:02 +02:00
Marius Bakke 5bef0f108c
gnu: python-olefile: Update to 0.46. 
* gnu/packages/python-xyz.scm (python-olefile): Update to 0.46.
[source]: Switch to release tarball instead of git snapshot.
 2019-07-06 18:26:02 +02:00
Ludovic Courtès 8dfb0c969e
tests: encrypted-root-os: Increase root partition size. 
1.2G had become slightly too small on x86_64.

* gnu/tests/install.scm (%encrypted-root-installation-script): Increase
root partition size to 1.3G.
 2019-07-06 16:17:24 +02:00
Ludovic Courtès c3ab921eed
ci: 'channel-build-system' honors the target system. 
Fixes a bug made evident e79281be105b16153c375af5506db31fd1e32698: the
x86_64-linux derivation of 'current-guix' would be cached and reused for
i686-linux, leading to test
failures.

Namely, /run/current-system/profile/bin/guix would have an x86_64
binary in its shebang, and thus it would end up being interpreted by
/bin/sh, which would fail like this:

  + guix --version
  /run/current-system/profile/bin/guix: line 2: !#: command not found
  /run/current-system/profile/bin/guix: line 3: syntax error near unexpected token `set!'
  /run/current-system/profile/bin/guix: line 3: `(begin (set! %load-path …

See <https://ci.guix.gnu.org/build/1431119/details>.

* gnu/ci.scm (channel-build-system)[build]: Pass #:system to
'run-with-store'.
 2019-07-06 16:17:24 +02:00
Rutger Helling 403f2189aa
gnu: wine-staging: Update to 4.12. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.12.
* gnu/packages/wine.scm (wine-staging): Update to 4.12.
 2019-07-06 10:47:51 +02:00
Ludovic Courtès 935e79af61
linux-container: Mount a new /dev/pts instance in the container. 
Fixes <https://bugs.gnu.org/36463>.
Reported by Steffen Rytter Postas <nc@scalehost.eu>.

* gnu/build/linux-container.scm (mount-file-systems): When /dev/ptmx
exists on the host, explicitly mount a new instance of devpts and make
/dev/ptmx a symlink to /dev/pts/ptmx.
 2019-07-06 00:26:58 +02:00
Nicolas Goaziou c356e5f7a0
gnu: grammalecte: Update to 1.2. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.2.
 2019-07-06 00:10:44 +02:00
Jakob L. Kreuze fa9edf09e9
gnu: Add machine type for deployment specifications. 
* gnu/machine.scm: New file.
* gnu/machine/ssh.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-07-06 02:10:04 -04:00
Ludovic Courtès cce7b03708
Revert "gnu: Add sbcl-cl-xmlspam." 
The sbcl-cl-xmlspam package currently has no license information, which
makes it non-free.

Furthermore, the invalid 'license' field prevents evaluation from
completing.

This reverts commit ec98254694.
 2019-07-05 22:30:27 +02:00
Ludovic Courtès 6b4a431843
Revert "gnu: Add sbcl-dbus." 
Remove sbcl-dbus because it depends on sbcl-cl-xmlspam, which is
currently non-free.

This reverts commit 7af213fefe.
 2019-07-05 22:29:12 +02:00
Ludovic Courtès 1aa026aa39
gnu: emacsy: Remove big 'texlive' dependency. 
* gnu/packages/guile-xyz.scm (emacsy)[inputs]: Replace TEXLIVE by a
'texlive-union' call.
 2019-07-05 18:10:29 +02:00
Ludovic Courtès eafd039005
gnu: hugin: Build against Exiv2 0.26. 
* gnu/packages/image.scm (exiv2-0.26): New variable.
* gnu/packages/photo.scm (hugin)[inputs]: Use it instead of EXIV2.
 2019-07-05 18:10:29 +02:00
Ricardo Wurmus b35af24938
gnu: nanopolish: Update to 0.11.1-1.6331dc4. 
* gnu/packages/bioinformatics.scm (nanopolish): Update to 0.11.1-1.6331dc4.
 2019-07-05 15:10:38 +02:00
Pierre Neidhardt 7af213fefe
gnu: Add sbcl-dbus. 
* gnu/packages/lisp.scm (sbcl-dbus): New variable.
 2019-07-05 12:37:03 +02:00
Pierre Neidhardt ec98254694
gnu: Add sbcl-cl-xmlspam. 
* gnu/packages/lisp.scm (sbcl-cl-xmlspam): New variable.
 2019-07-05 12:36:41 +02:00
Pierre Neidhardt 57f815cb6b
gnu: sbcl-trivia.trivial: Resolve Lisp type dynamically. 
* gnu/packages/lisp.scm (sbcl-trivia.trivial)[arguments]: Use %lisp-type
instead of hard-coding "sbcl".
 2019-07-05 12:30:41 +02:00
Pierre Neidhardt 4f54138731
gnu: Add sbcl-cxml. 
* gnu/packages/lisp.scm (sbcl-cxml): New variable.
 2019-07-05 12:30:21 +02:00
Pierre Neidhardt 9a08c0a577
gnu: Add sbcl-cxml+test. 
* gnu/packages/lisp.scm (sbcl-cxml+test): New variable.
 2019-07-05 12:29:55 +02:00
Pierre Neidhardt d22b47aad6
gnu: Add sbcl-cxml+klacks. 
* gnu/packages/lisp.scm (sbcl-cxml+klacks): New variable.
 2019-07-05 12:29:39 +02:00
Pierre Neidhardt 53270eb966
gnu: Add sbcl-cxml+dom. 
* gnu/packages/lisp.scm (sbcl-cxml+dom): New variable.
 2019-07-05 12:29:22 +02:00
Pierre Neidhardt 075e3220c6
gnu: Add sbcl-cxml+xml. 
* gnu/packages/lisp.scm (sbcl-cxml+xml): New variable.
 2019-07-05 12:29:13 +02:00
Pierre Neidhardt c51db1dd36
gnu: sbcl-closure-common: Use official home-page. 
* gnu/packages/lisp.scm (sbcl-closure-common)[home-page]: Do it.
 2019-07-05 12:22:31 +02:00
Pierre Neidhardt 1d8d87ddf7
gnu: sbcl-iolib: Add CFFI to list of inputs and fix spacing. 
* gnu/packages/lisp.scm (sbcl-iolib)[inputs]: Do it.
 2019-07-05 12:21:51 +02:00
Arun Isaac e48f80cba0
gnu: Add qlogo. 
* gnu/packages/logo.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
* gnu/packages/logo.scm (qlogo): New variable.
 2019-07-05 12:49:25 +05:30
Christopher Baines 4add773e8c
gnu: patchwork: Update to 2.1.4. 
* gnu/packages/patchutils.scm (patchwork): Update to 2.1.4.
 2019-07-05 07:52:44 +01:00
Pierre Neidhardt 87850c05a2
gnu: Add sbcl-trivia. 
* gnu/packages/lisp.scm (sbcl-trivia): New variable.
 2019-07-04 19:25:59 +02:00
Pierre Neidhardt 9d4e42261e
gnu: Add sbcl-trivia.cffi. 
* gnu/packages/lisp.scm (sbcl-trivia.cffi): New variable.
 2019-07-04 19:25:59 +02:00
Pierre Neidhardt 9b5e5eafc6
gnu: Add sbcl-trivia.quasiquote. 
* gnu/packages/lisp.scm (sbcl-trivia.quasiquote): New variable.
 2019-07-04 19:25:59 +02:00
Pierre Neidhardt 3706c0a432
gnu: Add sbcl-trivia.ppcre. 
* gnu/packages/lisp.scm (sbcl-trivia.ppcre): New variable.
 2019-07-04 19:25:59 +02:00
Pierre Neidhardt 9d450c6d42
gnu: Add sbcl-trivia.balland2006. 
* gnu/packages/lisp.scm (sbcl-trivia.balland2006): New variable.
 2019-07-04 19:25:58 +02:00
Pierre Neidhardt 02a8324b12
gnu: Add sbcl-trivia.trivial. 
* gnu/packages/lisp.scm (sbcl-trivia.trivial): New variable.
 2019-07-04 19:25:58 +02:00
Pierre Neidhardt 49df8a0ae8
gnu: Add sbcl-trivia.level2. 
* gnu/packages/lisp.scm (sbcl-trivia.level2): New variable.
 2019-07-04 19:25:58 +02:00
Pierre Neidhardt e4e84e3db6
gnu: Add sbcl-trivia.level1. 
* gnu/packages/lisp.scm (sbcl-trivia.level1): New variable.
 2019-07-04 19:25:58 +02:00
Pierre Neidhardt 5163929e68
gnu: Add sbcl-trivia.level0. 
* gnu/packages/lisp.scm (sbcl-trivia.level0): New variable.
 2019-07-04 19:25:58 +02:00
Pierre Neidhardt b72314963b
gnu: Add sbcl-fare-quasiquote-readtable. 
* gnu/packages/lisp.scm (sbcl-fare-quasiquote-readtable): New variable.
 2019-07-04 19:25:58 +02:00
Pierre Neidhardt 41c42e163c
gnu: Add sbcl-fare-quasiquote. 
* gnu/packages/lisp.scm (sbcl-fare-quasiquote): New variable.
 2019-07-04 19:25:58 +02:00
Pierre Neidhardt f1eb796134
gnu: Add sbcl-optima. 
* gnu/packages/lisp.scm (sbcl-optima): New variable.
 2019-07-04 19:25:58 +02:00
Pierre Neidhardt b0c1007dec
gnu: Add sbcl-type-i. 
* gnu/packages/lisp.scm (sbcl-type-i): New variable.
 2019-07-04 19:25:58 +02:00
Pierre Neidhardt f4a7653e44
gnu: Add sbcl-introspect-environment. 
* gnu/packages/lisp.scm (sbcl-introspect-environment): New variable.
 2019-07-04 19:25:58 +02:00
Pierre Neidhardt 9526af923a
gnu: Add sbcl-trivial-cltl2. 
* gnu/packages/lisp.scm (sbcl-trivial-cltl2): New variable.
 2019-07-04 19:25:58 +02:00
Pierre Neidhardt e3750dc7cb
gnu: Add sbcl-lisp-namespace. 
* gnu/packages/lisp.scm (sbcl-lisp-namespace): New variable.
 2019-07-04 19:25:58 +02:00
Alex Griffin e2332dec9f
gnu: Add pulseaudio-dlna. 
* gnu/packages/pulseaudio.scm (pulseaudio-dlna): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-04 18:05:03 +02:00
Alex Griffin 6609ebe7af
gnu: Add python2-zeroconf. 
* gnu/packages/python-xyz.scm (python2-zeroconf): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-04 18:05:03 +02:00
Alex Griffin dd85eca02a
gnu: Add python2-pyroute2. 
* gnu/packages/python-xyz.scm (python2-pyroute2): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-04 18:05:03 +02:00
Alex Griffin fb236fddb2
gnu: Add python-notify2, python2-notify2. 
* gnu/packages/python-xyz.scm (python-notify2): New variable.
(python2-notify2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-04 18:05:02 +02:00
Ludovic Courtès dea62932bc
pack: 'squashfs' backend records the profile's search paths. 
* guix/scripts/pack.scm (singularity-environment-file): New procedure.
(squashfs-image): Use it, and create /.singularity/env/90-environment.sh.
* gnu/tests/singularity.scm (run-singularity-test)["singularity run,
with environment"]: New test, currently skipped.
* gnu/tests/singularity.scm (build-tarball&run-singularity-test): Add
GUILE-JSON to the profile.
 2019-07-04 18:05:02 +02:00
Ludovic Courtès b9fcf0c82a
pack: 'docker' backend records the profile's search paths. 
* guix/docker.scm (config): Add #:environment parameter and honor it.
(build-docker-image): Likewise, and pass it to 'config'.
* guix/scripts/pack.scm (docker-image): Import (guix profiles) and (guix
search-paths).  Call 'profile-search-paths' and pass #:environment to
'build-docker-image'.
* gnu/tests/docker.scm (run-docker-test)["Load docker image and run it"]:
Add example that expects (json) to be available.
* gnu/tests/docker.scm (build-tarball&run-docker-test): Replace
%BOOTSTRAP-GUILE by GUILE-2.2 and GUILE-JSON in the environment.
 2019-07-04 18:05:02 +02:00
Marius Bakke 42dcfca4cc
Merge branch 'master' into staging 2019-07-04 16:16:41 +02:00
Pierre Neidhardt fc3f14927f
gnu: Add sbcl-dexador. 
* gnu/packages/lisp.scm (sbcl-dexador): New variable.
 2019-07-04 15:49:21 +02:00
Ricardo Wurmus c7b1d06024
gnu: pigx-rnaseq: Update to 0.0.8. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.8.
 2019-07-04 12:42:38 +02:00
Ludovic Courtès 5cf5505c70
gnu: Remove duplicate 'ruby-crass' package. 
* gnu/packages/ruby.scm (ruby-crass): Remove duplicate shadowed definition.
 2019-07-04 12:31:44 +02:00
Mikhail Kirillov fc4f7c45cf
gnu: Add ruby-backport. 
* gnu/packages/ruby.scm (ruby-backport): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-04 12:31:44 +02:00
Jens Mølgaard 872da48eab
gnu: Add qtpass. 
* gnu/packages/password-utils.scm (qtpass): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-04 12:31:44 +02:00
Mark H Weaver b09a3584fc
gnu: linux-libre: Update to 5.1.16. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.16.
(%linux-libre-hash): Update hash.
 2019-07-04 00:05:05 -04:00
Mark H Weaver 0e9e83c5d8
gnu: linux-libre@4.19: Update to 4.19.57. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.57.
(%linux-libre-4.19-hash): Update hash.
 2019-07-04 00:04:20 -04:00
Mark H Weaver e4fde6dcf3
gnu: linux-libre@4.14: Update to 4.14.132. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.132.
(%linux-libre-4.14-hash): Update hash.
 2019-07-04 00:03:30 -04:00
Leo Famulari 83b9ba2685
gnu: lpd8editor: Update to 0.0.13. 
* gnu/packages/music.scm (lpd8editor): Update to 0.0.13.
 2019-07-03 22:06:29 -04:00
Leo Famulari e6a57949f6
gnu: MPD: Update to 0.21.11. 
* gnu/packages/mpd.scm (mpd): Update to 0.21.11.
 2019-07-03 16:24:50 -04:00
Leo Famulari 1facde6a19
gnu: GraphicsMagick: Update to 1.3.32. 
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.32.
 2019-07-03 16:24:47 -04:00
Leo Famulari 156b7abca8
gnu: irssi: Update to 1.1.3. [fixes CVE-2019-13045]. 
* gnu/packages/irc.scm (irssi): Update to 1.1.3.
 2019-07-03 14:37:33 -04:00
Julien Lepiller dac8b27512
gnu: python-pygit2: Update to 0.28.2. 
* gnu/packages/python-xyz.scm (python-pygit2): Update to 0.28.2.
 2019-07-03 19:01:08 +02:00
Tobias Geerinckx-Rice dc40836839
gnu: snd: Update to 19.5. 
* gnu/packages/audio.scm (snd): Update to 19.5.
 2019-07-03 17:30:21 +02:00
Marius Bakke c6daa9cfb2
gnu: xkeyboard-config: Update to 2.27. 
* gnu/packages/xorg.scm (xkeyboard-config): Update to 2.27.
 2019-07-03 16:32:43 +02:00
Rutger Helling 15c92a652f
gnu: wireguard: Update to 0.0.20190702. 
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190702.
 2019-07-03 13:38:29 +02:00
Ludovic Courtès 9156396fe6
gnu: geeqie: Update to commit c220dde. 
* gnu/packages/image-viewers.scm (geeqie): Update to commit c220dde.
[source]: Use 'git-fetch' and 'git-reference'.
[arguments] <pre-bootstrap>: Add 'substitute*' calls for 'configure.ac'
and 'po/POTFILES.in'.
 2019-07-03 12:03:07 +02:00
Joseph LaFreniere f20d865239
gnu: Add emacs-minions. 
* gnu/packages/emacs-xyz.scm (emacs-minions): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-03 12:03:07 +02:00
Guillaume LE VAILLANT 1362e52907
gnu: monero-gui: Update to 0.14.1.0. 
* gnu/packages/finance.scm (monero-gui): Update to 0.14.1.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-03 12:03:07 +02:00
Guillaume LE VAILLANT fc54da1d02
gnu: monero: Update to 0.14.1.0. 
* gnu/packages/finance.scm (monero): Update to 0.14.1.0.
* gnu/packages/patches/monero-use-system-miniupnpc.patch: Update file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-03 12:03:07 +02:00
Tobias Geerinckx-Rice 84ce2a9499
gnu: thunar-volman: Update to 0.9.3. 
* gnu/packages/xfce.scm (thunar-volman): Update to 0.9.3.
 2019-07-03 00:26:08 +02:00
Tobias Geerinckx-Rice edb336468d
gnu: thunar: Update to 1.8.7. 
* gnu/packages/xfce.scm (thunar): Update to 1.8.7.
 2019-07-03 00:26:07 +02:00
Nicolas Goaziou a1ce06753a
gnu: audacity: Update to 2.3.2. 
* gnu/packages/audio.scm (audacity): Update to 2.3.2.
 2019-07-03 00:06:48 +02:00
Tobias Geerinckx-Rice c7949d6c00
gnu: xlockmore: Update to 5.57. 
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.57.
 2019-07-02 23:59:41 +02:00
Tobias Geerinckx-Rice 458fe41923
gnu: libvirt: Update to 5.5.0 [security fixes]. 
This release includes fixes for CVE-2019-10161, CVE-2019-10166,
CVE-2019-10167, and CVE-2019-10168.

If you think these sound familiar, you are[0] correct[1]…

[0]: https://www.redhat.com/archives/libvirt-announce/2019-June/msg00000.html
[1]: https://www.redhat.com/archives/libvirt-announce/2019-July/msg00000.html

* gnu/packages/virtualization.scm (libvirt): Update to 5.5.0.
 2019-07-02 23:59:41 +02:00
Tobias Geerinckx-Rice cb94ae38c1
gnu: python-libvirt: Update to 5.5.0. 
* gnu/packages/virtualization.scm (python-libvirt): Update to 5.5.0.
 2019-07-02 23:59:41 +02:00
Tobias Geerinckx-Rice 03b6c47445
gnu: alpine: Build reproducibly. 
This follows up commit 54278e225e.

* gnu/packages/mail.scm (arguments): Replace Makefile.in substitution
with the new ‘--with-date-stamp’ configure-flag.
 2019-07-02 23:59:41 +02:00
Tobias Geerinckx-Rice 0ca2507319
gnu: alpine: Don't use unstable tarball. 
* gnu/packages/mail.scm (alpine)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-07-02 23:59:41 +02:00
Tobias Geerinckx-Rice db37dd91e4
gnu: youtube-dl-gui: Add .desktop file. 
* gnu/packages/video.scm (youtube-dl-gui)[arguments]:
Add a ‘create-desktop-file’ phase.
 2019-07-02 23:13:21 +02:00
Tobias Geerinckx-Rice 54278e225e
gnu: alpine: Update to 2.21.99999. 
* gnu/packages/mail.scm (alpine): Update to 2.21.99999.
 2019-07-02 23:13:21 +02:00
Tobias Geerinckx-Rice a321ac9969
gnu: tumbler: Update to 0.2.5. 
* gnu/packages/xfce.scm (tumbler): Update to 0.2.5.
 2019-07-02 23:13:21 +02:00
Tobias Geerinckx-Rice da83224dd0
gnu: alpine: Use HTTPS home page. 
* gnu/packages/mail.scm (alpine)[home-page]: Use HTTPS.
 2019-07-02 23:13:20 +02:00
Tobias Geerinckx-Rice 3f6943846f
gnu: garcon: Update to 0.6.3. 
* gnu/packages/xfce.scm (garcon): Update to 0.6.3.
 2019-07-02 23:13:20 +02:00
Marius Bakke d69e90e2af
gnu: libdrm: Update to 2.4.99. 
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.99.
 2019-07-02 21:05:21 +02:00
Tobias Geerinckx-Rice 1b7395b1ad
gnu: tomb: Update to 2.6. 
* gnu/packages/crypto.scm (tomb): Update to 2.6.
 2019-07-02 20:57:33 +02:00
Marius Bakke 30484be05d
Merge branch 'master' into staging 2019-07-02 20:14:23 +02:00
Zzull 2e03bbeb7b
gnu: Add emacs-multi-term 
* gnu/packages/emacs-xyz.scm (emacs-multi-term): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-02 18:33:52 +02:00
Katherine Cox-Buday c5ab53204e
gnu: Add trivial-utf-8. 
* gnu/packages/lisp.scm (sbcl-trivial-utf-8, ecl-trivial-utf-8): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-02 18:33:52 +02:00
Jacob MacDonald 252a4d5936
gnu: Add ghc-validation. 
* gnu/packages/haskell.scm (ghc-validation): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-02 18:33:52 +02:00
Jacob MacDonald 2c4e4bc658
gnu: Add ghc-hedgehog. 
* gnu/packages/haskell-check.scm (ghc-hedgehog): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-02 18:33:52 +02:00
Jacob MacDonald 3c69d462ce
gnu: Add ghc-concurrent-output. 
* gnu/packages/haskell.scm (ghc-concurrent-output): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-02 18:33:52 +02:00
Jacob MacDonald 4e3ebbfb16
gnu: ghc-ansi-terminal: Update to 0.9.1. 
* gnu/packages/haskell.scm (ghc-ansi-terminal): Update to 0.9.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-02 18:33:52 +02:00
Jacob MacDonald 5a499d0f7d
gnu: ghc-ansi-wl-pprint: Use ghc-ansi-terminal-0.8. 
* gnu/packages/haskell.scm (ghc-ansi-wl-pprint)[inputs]: Use ghc-ansi-terminal-0.8.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-02 18:33:52 +02:00
Jacob MacDonald cbff89d126
gnu: Add ghc-ansi-terminal-0.8. 
* gnu/packages/haskell.scm (ghc-ansi-terminal-0.8): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-02 18:33:51 +02:00
Jacob MacDonald c473bd1881
gnu: Add ghc-wl-pprint-annotated. 
* gnu/packages/haskell.scm (ghc-wl-pprint-annotated): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-02 18:33:51 +02:00
guy fleury iteriteka 52bb05c702
gnu: Add chafa. 
* gnu/packages/image-viewers.scm (chaffa): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-02 18:33:51 +02:00
Robert Vollmert 334a2f4def
gnu: postgres service: More secure default permissions. 
This changes to 'peer' authentication for local socket connections,
and password-based authentication for local network connections.

* gnu/services/databases.scm (%default-postgres-hba): Change
authentication method.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-02 18:33:51 +02:00
Marius Bakke 8b5df106fd
gnu: WebKitGTK: Update to 2.24.3. 
* gnu/packages/webkit.scm (webkitgtk-2.24): Update to 2.24.3.
[source](patches): Remove.
* gnu/packages/patches/webkitgtk-sans-gstreamer-gl.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2019-07-02 17:27:13 +02:00
Robert Vollmert b8d41cfc87
gnu: ghc-primitive: Update to 0.6.4.0. 
* gnu/packages/haskell.scm (ghc-primitive): Update to 0.6.4.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-07-02 17:20:15 +02:00
Marius Bakke f62b57ba74
gnu: re2: Update to 2019-07-01. 
* gnu/packages/regex.scm (re2): Update to 2019-07-01.
 2019-07-02 17:18:54 +02:00
Marius Bakke e307f52e01
gnu: postgresql@10: Update to 10.9. 
* gnu/packages/databases.scm (postgresql): Update to 10.9.
 2019-07-02 17:14:34 +02:00
Marius Bakke 0323db5aef
gnu: tzdata: Update to 2019b. 
* gnu/packages/base.scm (tzdata): Update to 2019b.
 2019-07-02 17:11:39 +02:00
Rutger Helling 35a16f5f6d
gnu: btrfs-progs: Update to 5.1.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 5.1.1.
 2019-07-02 15:52:04 +02:00
Marius Bakke af65e4c289
gnu: ImageMagick: Update to 6.9.10-51. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-51.
 2019-07-02 14:49:47 +02:00
Marius Bakke 6dc7a19342
gnu: python-mako: Update to 1.0.13. 
* gnu/packages/python-xyz.scm (python-mako): Update to 1.0.13.
 2019-07-02 14:48:04 +02:00
Marius Bakke c6c0940ea3
gnu: python-pycparser: Update to 2.19. 
* gnu/packages/python-xyz.scm (python-pycparser): Update to 2.19.
[arguments]: End phases on #t.
 2019-07-02 14:38:23 +02:00
Marius Bakke 4c1cfe0faf
gnu: perl-module-build: Update to 0.4229. 
* gnu/packages/perl.scm (perl-module-build): Update to 0.4229.
 2019-07-02 14:21:36 +02:00
Efraim Flashner 697df13f61
gnu: octave-cli: Sort inputs alphabetically. 
* gnu/packages/maths.scm (octave-cli)[inputs]: Sort inputs alphabetically.
 2019-07-02 15:04:56 +03:00
Efraim Flashner 4bac5bba51
gnu: Wrap program with libraries. 
* gnu/packages/package-management.scm (stow)[arguments]: Add custom
'wrap-stow phase to wrap stow with necessary inputs.
[propagated-inputs]: Move perl-clone, perl-clone-choose, perl-hash-merge
to...
[inputs]: ... here.
 2019-07-02 11:43:04 +03:00
Amar Singh 71a2927705
gnu: emacs-shroud: Update to 1.83.4. 
* gnu/packages/emacs-xyz.scm (emacs-shroud): Update to 1.83.4.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-07-02 10:39:36 +03:00
Rutger Helling 941ae98eae
gnu: faudio: Update to 19.07. 
* gnu/packages/audio.scm (faudio): Update to 19.07.
 2019-07-02 09:36:50 +02:00
Jan Nieuwenhuizen 48eb71aea8
gnu: emacsy: Update to 0.4.1. 
* gnu/packages/guile-xyz.scm (emacsy): Update to 0.4.1.
 2019-07-02 07:59:15 +02:00
Marius Bakke 27b3568b61
gnu: tzdata: Update source URI. 
* gnu/packages/base.scm (tzdata, tzdata-for-tests)[source, native-inputs]:
Update redirected URIs.
 2019-07-02 01:57:13 +02:00
Nicolas Goaziou 0f0651295e
gnu: silkaj: Update to 0.7.2. 
* gnu/packages/finance.scm (silkaj): Update to 0.7.2.
 2019-07-02 00:45:05 +02:00
Nicolas Goaziou 7242d5792b
gnu: giac: Update to 1.5.0-61. 
* gnu/packages/algebra.scm (giac): Update to 1.5.0-61.
 2019-07-02 00:38:36 +02:00
Nicolas Goaziou 2868804de6
gnu: python-duniterpy: Update to 0.54.3. 
* gnu/packages/finance.scm (python-duniterpy): Update to 0.54.3.
 2019-07-02 00:13:08 +02:00
Ludovic Courtès 78c88baad5
gnu: guile: Add 2.2.6. 
* gnu/packages/guile.scm (guile-2.2.5): Rename to...
(guile-2.2.6): ... this, and update to 2.2.6.
 2019-07-01 12:29:34 +02:00
Danny Milosavljevic 037bef7db4
gnu: behave: Fix build. 
* gnu/packages/check.scm (behave)[propagated-inputs]: Add
python-importlib-metadata.
 2019-07-01 12:08:08 +02:00
Marius Bakke a3d1a3487a
gnu: gtksourceviewmm: Build against gtksourceview@3. 
* gnu/packages/gtk.scm (gtksourceviewmm)[propagated-inputs]: Change
GTKSOURCEVIEW to GTKSOURCEVIEW-3.
 2019-06-30 20:14:58 +02:00
Marius Bakke 5dd0269244
gnu: miniupnpc: Update to 2.1.20190625. 
* gnu/packages/upnp.scm (miniupnpc): Update to 2.1.20190625.
 2019-06-30 14:11:02 +02:00
Marius Bakke 1307aa4427
gnu: mbedtls-apache: Update to 2.16.2. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.16.2.
 2019-06-30 14:11:01 +02:00
Marius Bakke ff68ddb032
gnu: ungoogled-chromium: Build against ICU 64. 
* gnu/packages/icu4c.scm (icu4c-64): New public variable.
* gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Change ICU4C to ICU4C-64.
 2019-06-30 14:11:00 +02:00
Marius Bakke d1b93e91a4
gnu: python-cython: Update to 0.29.11. 
* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.11.
 2019-06-30 13:41:53 +02:00
Marius Bakke 730c1cc04e
gnu: ImageMagick: Update to 6.9.10-50. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-50.
 2019-06-30 13:41:21 +02:00
Marius Bakke c50f15d67f
gnu: perl-net-ssleay: Update source URI. 
This is a follow-up to commit 966e4beadc.

* gnu/packages/tls.scm (perl-net-ssleay)[source](uri): Update to current.
 2019-06-30 12:45:52 +02:00
Marius Bakke 966e4beadc
gnu: perl-net-ssleay: Update to 1.88. 
* gnu/packages/tls.scm (perl-net-ssleay): Update to 1.88.
 2019-06-29 23:30:19 +02:00
Marius Bakke 5e26ac3f6a
gnu: gtk+: Update to 3.24.9. 
* gnu/packages/gtk.scm (gtk+): Update to 3.24.9.
 2019-06-29 23:30:19 +02:00
Marius Bakke 8cf7afe69d
gnu: libinput: Update to 1.13.4. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.13.4.
 2019-06-29 23:30:19 +02:00
Marius Bakke c2dad3f983
gnu: nss, nss-certs: Update to 3.44.1. 
* gnu/packages/certs.scm (nss-certs): Update to 3.44.1.
* gnu/packages/nss.scm (nss): Likewise.
 2019-06-29 23:30:18 +02:00
Marius Bakke 93ef8ca662
gnu: mesa: Do not pass an empty string argument to the build system. 
This is a follow-up to commit 301b2e74f9.

* gnu/packages/gl.scm (mesa)[arguments]: Return the empty list instead of an
empty string for the non-matching case.
 2019-06-29 23:30:18 +02:00
Marius Bakke 6e1f8d552b
Merge branch 'master' into staging 2019-06-29 23:23:59 +02:00
Marius Bakke 8e92d5465f
gnu: nginx: Update to 1.17.1. 
* gnu/packages/web.scm (nginx): Update to 1.17.1.
 2019-06-29 23:17:13 +02:00
Marius Bakke 55d1d9eb2f
gnu: gstreamer: Fix buffer offset problem. 
* gnu/packages/patches/gstreamer-buffer-reset-offset.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gstreamer)[source](patches): New field.
[arguments]: Do not disable any tests.
 2019-06-29 23:17:13 +02:00
Efraim Flashner bdb51ed6d1
gnu: stow: Update license information. 
* gnu/packages/package-management.scm (stow)[license]: Update to gpl3+.
 2019-06-29 21:18:50 +03:00
Tobias Geerinckx-Rice 3a8bfebed9
etc: Remove hydra.gnu.org.pub key. 
* etc/substitutes/hydra.gnu.org.pub: Delete file.
* guix/self.scm (miscellaneous-files): Don't install it.
* Makefile.am (dist_pkgdata_DATA): Remove it.
* gnu/services/base.scm (%default-authorized-guix-keys): Likewise.
(hydra-key-authorization): Rename to…
(substitute-key-authorization): …this.  Adjust only call site.
 2019-06-29 14:27:22 +02:00
Tobias Geerinckx-Rice a3efe269b5
gnu: flashrom: Update to 1.1. 
* gnu/packages/flashing-tools.scm (flashrom): Update to 1.1.
 2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice ad9baf38ce
gnu: di: Update to 4.47.1. 
* gnu/packages/admin.scm (di): Update to 4.47.1.
 2019-06-29 06:28:50 +02:00
Eric Bavier 30833b1397
gnu: stow: Update to 2.3.0. 
* gnu/packages/package-management.scm (stow): Update to 2.3.0.
[propagated-inputs]: New field.
 2019-06-28 22:49:21 -05:00
Eric Bavier d1555f34c0
gnu: Add Perl Clone::Choose. 
* gnu/packages/perl.scm (perl-clone-choose): New variable.
 2019-06-28 22:44:59 -05:00
Ivan Petkov f5de2b9a3e
gnu: rust: use llvm@8 
* gnu/packages/llvm.scm (llvm): Rename to...
(llvm-8): ...this.
(llvm): New variable.
* gnu/packages/rust.scm (rust)[inputs]: Use llvm-8
 2019-06-28 18:31:51 -07:00
Ivan Petkov f676b2a45f
gnu: rust: downgrade older versions to llvm@6 
* gnu/packages/rust.scm: (rust-1.30): Remove llvm override.
 2019-06-28 18:31:51 -07:00
Ivan Petkov f309420b2d
gnu: rust: remove debug-info patch thanks to newer gdb version 
* gnu/local.mk: (dist_patch_DATA): Delete
%D%/packages/patches/rust-1.30-gdb-llvm.patch
* gnu/packages/rust.scm: (rust-1.30): Delete patch overrides.
(rust-1.31): Delete patch overrides.
 2019-06-28 18:31:47 -07:00
Ricardo Wurmus 3d0c9ff83e
gnu: r-quantreg: Update to 5.41. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.41.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 73a29d39b3
gnu: r-fpc: Update to 2.2-3. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-3.
[propagated-inputs]: Remove r-mvtnorm.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 666a5a649c
gnu: r-mclust: Update to 5.4.4. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.4.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus fad641716e
gnu: r-mvtnorm: Update to 1.0-11. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-11.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 30f7acdb6b
gnu: r-segmented: Update to 1.0-0. 
* gnu/packages/statistics.scm (r-segmented): Update to 1.0-0.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 5eddf1e291
gnu: r-plotrix: Update to 3.7-6. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-6.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 0b17f1d1dd
gnu: r-dbplyr: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.2.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus ef558bcfc5
gnu: r-rlang: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.0.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 45ad3fa9e1
gnu: r-gdtools: Update to 0.1.9. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.9.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 2c4b38002e
gnu: r-cluster: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus d42fb7d293
gnu: r-future-apply: Update to 1.3.0. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.3.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 36ff60f539
gnu: r-bootstrap: Update to 2019.6. 
* gnu/packages/cran.scm (r-bootstrap): Update to 2019.6.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 93e72161ae
gnu: r-rnifti: Update to 0.11.0. 
* gnu/packages/cran.scm (r-rnifti): Update to 0.11.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 9f84c9e843
gnu: r-rgl: Update to 0.100.24. 
* gnu/packages/cran.scm (r-rgl): Update to 0.100.24.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus da4754a3b1
gnu: r-remotes: Update to 2.1.0. 
* gnu/packages/cran.scm (r-remotes): Update to 2.1.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus a634a76a06
gnu: r-bayestestr: Update to 0.2.2. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.2.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 992e03d209
gnu: r-emmeans: Update to 1.3.5.1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.5.1.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 56ab7acb96
gnu: r-ggstance: Update to 0.3.2. 
* gnu/packages/cran.scm (r-ggstance): Update to 0.3.2.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus c46a16407b
gnu: r-flextable: Update to 0.5.5. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.5.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 36c5f86fab
gnu: r-sjmisc: Update to 2.8.1. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.1.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus c3447a92ee
gnu: r-prediction: Update to 0.3.14. 
* gnu/packages/cran.scm (r-prediction): Update to 0.3.14.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 0d2e266220
gnu: r-officer: Update to 0.3.5. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.5.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 0ccb34584c
gnu: r-ggpubr: Update to 0.2.1. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.1.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus a4bc73b236
gnu: r-ellipsis: Update to 0.2.0. 
* gnu/packages/cran.scm (r-ellipsis): Update to 0.2.0.
[propagated-inputs]: Add r-rlang.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus dacf52e0a3
gnu: r-cgdsr: Update to 1.3.0. 
* gnu/packages/cran.scm (r-cgdsr): Update to 1.3.0.
[propagated-inputs]: Add r-httr.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 22b2d8b97f
gnu: r-quantmod: Update to 0.4-15. 
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-15.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus f5ec882390
gnu: r-tinytex: Update to 0.14. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.14.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus db794146ac
gnu: r-xfun: Update to 0.8. 
* gnu/packages/cran.scm (r-xfun): Update to 0.8.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 1f7e8d49c3
gnu: r-performanceanalytics: Update to 1.5.3. 
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.3.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 4ae5f18a25
gnu: r-abbyyr: Update to 0.5.5. 
* gnu/packages/cran.scm (r-abbyyr): Update to 0.5.5.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 5b86bcfa68
gnu: r-phangorn: Update to 2.5.5. 
* gnu/packages/bioinformatics.scm (r-phangorn): Update to 2.5.5.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 7f17e60ab7
gnu: r-tximport: Update to 1.12.3. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.3.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus dafd290d21
gnu: r-genomicfeatures: Update to 1.36.3. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.3.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus c40bba2b36
gnu: r-genomicalignments: Update to 1.20.1. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.20.1.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 888085c36c
gnu: r-biomart: Update to 2.40.1. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.1.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus f0c244229a
gnu: r-edger: Update to 3.26.5. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.5.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 0253b5d881
gnu: r-systempiper: Update to 1.18.2. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.2.
 2019-06-29 01:34:42 +02:00
Ricardo Wurmus 3e265d968b
gnu: r-rsubread: Update to 1.34.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.4.
 2019-06-29 01:34:42 +02:00
Ricardo Wurmus 3c944fdace
gnu: r-genomicscores: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.8.1.
 2019-06-29 01:34:42 +02:00
Ricardo Wurmus aff3ecbfda
gnu: r-dose: Update to 3.10.2. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.2.
 2019-06-29 01:34:42 +02:00
Marius Bakke 4289d1d71c
gnu: python-llvmlite: Build against LLVM 7. 
This is a follow-up to commit c5296e205b.

* gnu/packages/llvm.scm (llvm-7, clang-runtime-7, clang-7): New public variables.
(python-llvmlite)[inputs]: Inherit from LLVM-7 instead of LLVM.
 2019-06-28 20:53:20 +02:00
Jakob L. Kreuze 4ee2cce327
gnu: Add beets-bandcamp. 
* gnu/packages/music.scm (beets-bandcamp): New variable.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-06-28 14:22:05 +02:00
Nicolas Goaziou 9d83e60e51
gnu: musescore: Update to 3.2. 
* gnu/packages/music.scm (musescore): Update to 3.2.
 2019-06-28 10:46:45 +02:00
Nicolas Goaziou 458f410bc2
gnu: snap: Update to 5. 
* gnu/packages/education.scm (snap): Update to 5.
 2019-06-28 10:11:12 +02:00
Efraim Flashner 5b786db86c
gnu: atlas: All phases return #t. 
* gnu/packages/maths.scm (atlas)[arguments]: Ensure all custom phases
return #t.
 2019-06-28 10:39:11 +03:00
Nicolas Goaziou 2668e06efd
gnu: krita: Update to 4.2.2. 
* gnu/packages/kde.scm (krita): Update to 4.2.2.
[source]: Don't use NAME in source URI.
[arguments]: Remove obsolete configure flags.
[native-inputs]: Add pkg-config.
[inputs]: Add quazip, reorder alphabetically.
 2019-06-28 09:34:25 +02:00
Nicolas Goaziou 09debcf5aa
gnu: Add quazip. 
* gnu/packages/compression.scm (quazip): New variable.
 2019-06-28 09:34:25 +02:00
Mark H Weaver fbb5b688b6
gnu: linux-libre@4.14: Update to 4.14.131. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.131.
(%linux-libre-4.14-hash): Update hash.
 2019-06-27 18:58:45 -04:00
Mark H Weaver 1ad3e3f9f1
gnu: linux-libre@4.9: Update to 4.9.184. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.184.
 2019-06-27 18:58:06 -04:00
Mark H Weaver 9969b436af
gnu: linux-libre@4.4: Update to 4.4.184. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.184.
 2019-06-27 18:57:10 -04:00
Ricardo Wurmus bae0f8af21
gnu: pigx-scrnaseq: Update to 0.0.8. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.8.
 2019-06-27 23:23:29 +02:00
Rutger Helling 6ad087b821
gnu: mame: Update to 0.211. 
* gnu/packages/emulators.scm (mame): Update to 0.211.
 2019-06-27 13:28:33 +02:00